RNA–Protein interactions for RNA: ENST00000602503.1

KDM1A-206, Transcript of lysine demethylase 1A, humanhuman

Gene KDM1A, Length 2,810 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1A-206ENST00000602503 BCANQ96GW7 911 aa10.9□□□□□ -0.66
KDM1A-206ENST00000602503 PKNOX2Q96KN3 472 aa10.89□□□□□ -0.67
KDM1A-206ENST00000602503 ERICH3Q5RHP9 1530 aa10.85□□□□□ -0.67
KDM1A-206ENST00000602503 MAPK8IP2Q13387 824 aaPredicted RBP10.85□□□□□ -0.67
KDM1A-206ENST00000602503 RTL5Q5HYW3 569 aaPredicted RBP10.85□□□□□ -0.67
KDM1A-206ENST00000602503 RUSC2Q8N2Y8 1516 aa10.84□□□□□ -0.67
KDM1A-206ENST00000602503 NCAPD3P42695 1498 aa10.84□□□□□ -0.67
KDM1A-206ENST00000602503 GLIPR1L2Q4G1C9 344 aa10.84□□□□□ -0.67
KDM1A-206ENST00000602503 PRDM2Q13029 1718 aa10.82□□□□□ -0.68
KDM1A-206ENST00000602503 NESP48681 1621 aa10.82□□□□□ -0.68
KDM1A-206ENST00000602503 CCDC136Q96JN2 1154 aa10.82□□□□□ -0.68
KDM1A-206ENST00000602503 NOP58Q9Y2X3 529 aaKnown RBP10.81□□□□□ -0.68
KDM1A-206ENST00000602503 VPS8Q8N3P4 1428 aa10.81□□□□□ -0.68
KDM1A-206ENST00000602503 CLIP1P30622 1438 aa10.79□□□□□ -0.68
KDM1A-206ENST00000602503 UBTFP17480 764 aaKnown RBP10.79□□□□□ -0.68
KDM1A-206ENST00000602503 C11orf95C9JLR9 678 aaPredicted RBP10.78□□□□□ -0.68
KDM1A-206ENST00000602503 RANGAP1P46060 587 aaPredicted RBP10.78□□□□□ -0.68
KDM1A-206ENST00000602503 CNKSR2Q8WXI2 1034 aa10.76□□□□□ -0.69
KDM1A-206ENST00000602503 KCNA4P22459 653 aa10.76□□□□□ -0.69
KDM1A-206ENST00000602503 DMRT2Q9Y5R5 561 aa10.76□□□□□ -0.69
KDM1A-206ENST00000602503 NCBP3Q53F19 620 aaKnown RBP10.75□□□□□ -0.69
KDM1A-206ENST00000602503 PRXQ9BXM0 1461 aa10.75□□□□□ -0.69
KDM1A-206ENST00000602503 USP35Q9P2H5 1018 aa10.75□□□□□ -0.69
KDM1A-206ENST00000602503 ITGAEP38570 1179 aa10.74□□□□□ -0.69
KDM1A-206ENST00000602503 RSPH6AQ9H0K4 717 aa10.74□□□□□ -0.69
KDM1A-206ENST00000602503 CCER2I3L3R5 266 aa10.73□□□□□ -0.69
KDM1A-206ENST00000602503 CFTRP13569 1480 aa10.72□□□□□ -0.69
KDM1A-206ENST00000602503 RAPGEF2Q9Y4G8 1499 aa10.72□□□□□ -0.69
KDM1A-206ENST00000602503 IL27Q8NEV9 243 aa10.72□□□□□ -0.69
KDM1A-206ENST00000602503 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.72□□□□□ -0.69
KDM1A-206ENST00000602503 NBR1Q14596 966 aa10.71□□□□□ -0.7
KDM1A-206ENST00000602503 PODXL2Q9NZ53 605 aa10.71□□□□□ -0.7
KDM1A-206ENST00000602503 KIF27Q86VH2 1401 aa10.69□□□□□ -0.7
KDM1A-206ENST00000602503 PPP4R2Q9NY27 417 aa10.68□□□□□ -0.7
KDM1A-206ENST00000602503 CUX1P39880 1505 aa10.68□□□□□ -0.7
KDM1A-206ENST00000602503 WASHC2AQ641Q2 1341 aa10.68□□□□□ -0.7
KDM1A-206ENST00000602503 ANP32AP39687 249 aaKnown RBP10.66□□□□□ -0.7
KDM1A-206ENST00000602503 WASHC2CQ9Y4E1 1318 aa10.66□□□□□ -0.7
KDM1A-206ENST00000602503 IPO9Q96P70 1041 aaKnown RBP10.65□□□□□ -0.7
KDM1A-206ENST00000602503 CADPSQ9ULU8 1353 aa10.65□□□□□ -0.7
KDM1A-206ENST00000602503 MAP3K1Q13233 1512 aa10.64□□□□□ -0.71
KDM1A-206ENST00000602503 HNRNPUL2Q1KMD3 747 aaKnown RBP10.64□□□□□ -0.71
KDM1A-206ENST00000602503 ZBTB47Q9UFB7 747 aaPredicted RBP10.64□□□□□ -0.71
KDM1A-206ENST00000602503 ARAP1Q96P48 1450 aa10.64□□□□□ -0.71
KDM1A-206ENST00000602503 RTN4Q9NQC3 1192 aaKnown RBP10.63□□□□□ -0.71
KDM1A-206ENST00000602503 DHX57Q6P158 1386 aaKnown RBP10.62□□□□□ -0.71
KDM1A-206ENST00000602503 CUX2O14529 1486 aa10.61□□□□□ -0.71
KDM1A-206ENST00000602503 NPM3O75607 178 aaKnown RBP10.6□□□□□ -0.71
KDM1A-206ENST00000602503 KCNH8Q96L42 1107 aa10.6□□□□□ -0.71
KDM1A-206ENST00000602503 RRBP1Q9P2E9 1410 aaKnown RBP10.6□□□□□ -0.71
KDM1A-206ENST00000602503 PPM1GO15355 546 aaPredicted RBP10.59□□□□□ -0.71
KDM1A-206ENST00000602503 PAK3O75914 559 aaPredicted RBP10.59□□□□□ -0.71
KDM1A-206ENST00000602503 FANCD2Q9BXW9 1451 aa10.58□□□□□ -0.72
KDM1A-206ENST00000602503 ANP32CO43423 234 aa10.58□□□□□ -0.72
KDM1A-206ENST00000602503 RNF216Q9NWF9 866 aaPredicted RBP10.56□□□□□ -0.72
KDM1A-206ENST00000602503 FAM43AQ8N2R8 423 aa10.56□□□□□ -0.72
KDM1A-206ENST00000602503 ZMYND15Q9H091 742 aa10.55□□□□□ -0.72
KDM1A-206ENST00000602503 RAD54L2Q9Y4B4 1467 aa10.55□□□□□ -0.72
KDM1A-206ENST00000602503 PLEKHG5O94827 1062 aa10.54□□□□□ -0.72
KDM1A-206ENST00000602503 HOXD11P31277 338 aaPredicted RBP10.54□□□□□ -0.72
KDM1A-206ENST00000602503 TRIM52Q96A61 297 aa10.53□□□□□ -0.72
KDM1A-206ENST00000602503 ARHGAP35Q9NRY4 1499 aa10.53□□□□□ -0.72
KDM1A-206ENST00000602503 NEFMP07197 916 aa10.52□□□□□ -0.73
KDM1A-206ENST00000602503 PPP1R15AO75807 674 aaPredicted RBP10.51□□□□□ -0.73
KDM1A-206ENST00000602503 KIF21AQ7Z4S6 1674 aa10.51□□□□□ -0.73
KDM1A-206ENST00000602503 POTEDQ86YR6 584 aa10.51□□□□□ -0.73
KDM1A-206ENST00000602503 VSIG10Q8N0Z9 540 aa10.5□□□□□ -0.73
KDM1A-206ENST00000602503 TIMELESSQ9UNS1 1208 aa10.5□□□□□ -0.73
KDM1A-206ENST00000602503 TIAM1Q13009 1591 aa10.5□□□□□ -0.73
KDM1A-206ENST00000602503 CFAP43Q8NDM7 1665 aa10.5□□□□□ -0.73
KDM1A-206ENST00000602503 GSE1Q14687 1217 aa10.49□□□□□ -0.73
KDM1A-206ENST00000602503 DNMBPQ6XZF7 1577 aa10.49□□□□□ -0.73
KDM1A-206ENST00000602503 CUL7Q14999 1698 aa10.49□□□□□ -0.73
KDM1A-206ENST00000602503 IGF1RP08069 1367 aa10.49□□□□□ -0.73
KDM1A-206ENST00000602503 FGD5Q6ZNL6 1462 aa10.49□□□□□ -0.73
KDM1A-206ENST00000602503 TDRD9Q8NDG6 1382 aaKnown RBP10.49□□□□□ -0.73
KDM1A-206ENST00000602503 FHAD1B1AJZ9 1412 aa10.49□□□□□ -0.73
KDM1A-206ENST00000602503 EFCAB5A4FU69 1503 aa10.49□□□□□ -0.73
KDM1A-206ENST00000602503 DDX10Q13206 875 aaKnown RBP10.48□□□□□ -0.73
KDM1A-206ENST00000602503 RRP9O43818 475 aaKnown RBP10.48□□□□□ -0.73
KDM1A-206ENST00000602503 URB2Q14146 1524 aaKnown RBP10.48□□□□□ -0.73
KDM1A-206ENST00000602503 ERCC6Q03468 1493 aa10.48□□□□□ -0.73
KDM1A-206ENST00000602503 AQRO60306 1485 aaKnown RBP eCLIP10.47□□□□□ -0.732e-7■■■□□ 17.6
KDM1A-206ENST00000602503 CCNB3Q8WWL7 1395 aa10.47□□□□□ -0.73
KDM1A-206ENST00000602503 ABCA10Q8WWZ4 1543 aa10.46□□□□□ -0.73
KDM1A-206ENST00000602503 CARMIL1Q5VZK9 1371 aa10.45□□□□□ -0.74
KDM1A-206ENST00000602503 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.44□□□□□ -0.74
KDM1A-206ENST00000602503 TOPBP1Q92547 1522 aa10.44□□□□□ -0.74
KDM1A-206ENST00000602503 BRPF3Q9ULD4 1205 aa10.44□□□□□ -0.74
KDM1A-206ENST00000602503 P3H3Q8IVL6 736 aa10.43□□□□□ -0.74
KDM1A-206ENST00000602503 CTTNBP2Q8WZ74 1663 aa10.43□□□□□ -0.74
KDM1A-206ENST00000602503 PDS5BQ9NTI5 1447 aa10.43□□□□□ -0.74
KDM1A-206ENST00000602503 HNRNPUQ00839 825 aaKnown RBP eCLIP10.43□□□□□ -0.74
KDM1A-206ENST00000602503 POLA1P09884 1462 aaPredicted RBP10.42□□□□□ -0.74
KDM1A-206ENST00000602503 LRRC9Q6ZRR7 1453 aa10.42□□□□□ -0.74
KDM1A-206ENST00000602503 LAMC3Q9Y6N6 1575 aa10.42□□□□□ -0.74
KDM1A-206ENST00000602503 WDR97A6NE52 1622 aa10.42□□□□□ -0.74
KDM1A-206ENST00000602503 HSP90AA2PQ14568 343 aaPredicted RBP10.42□□□□□ -0.74
KDM1A-206ENST00000602503 FYCO1Q9BQS8 1478 aa10.42□□□□□ -0.74
KDM1A-206ENST00000602503 DDRGK1Q96HY6 314 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms