RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LOC105371045A0A1W2PR82 267 aa23.35■■□□□ 1.33
UPF1-211ENST00000600868 KIAA0586Q9BVV6 1533 aa23.33■■□□□ 1.33
UPF1-211ENST00000600868 CTTNBP2Q8WZ74 1663 aa23.32■■□□□ 1.32
UPF1-211ENST00000600868 TNIKQ9UKE5 1360 aa23.29■■□□□ 1.32
UPF1-211ENST00000600868 CLASP1Q7Z460 1538 aa23.29■■□□□ 1.32
UPF1-211ENST00000600868 IQGAP2Q13576 1575 aa23.27■■□□□ 1.32
UPF1-211ENST00000600868 JPH4Q96JJ6 628 aa23.19■■□□□ 1.3
UPF1-211ENST00000600868 SHROOM2Q13796 1616 aa23.18■■□□□ 1.3
UPF1-211ENST00000600868 UGGT2Q9NYU1 1516 aa23.18■■□□□ 1.3
UPF1-211ENST00000600868 PRG4Q92954 1404 aaPredicted RBP23.09■■□□□ 1.29
UPF1-211ENST00000600868 CEP162Q5TB80 1403 aa23.08■■□□□ 1.29
UPF1-211ENST00000600868 RANGAP1P46060 587 aaPredicted RBP23.08■■□□□ 1.29
UPF1-211ENST00000600868 EFCAB5A4FU69 1503 aa23.08■■□□□ 1.28
UPF1-211ENST00000600868 DISP1Q96F81 1524 aa23.08■■□□□ 1.28
UPF1-211ENST00000600868 SAMD9Q5K651 1589 aa23.07■■□□□ 1.28
UPF1-211ENST00000600868 CLIP1P30622 1438 aa23.07■■□□□ 1.28
UPF1-211ENST00000600868 CARMIL2Q6F5E8 1435 aa23.07■■□□□ 1.28
UPF1-211ENST00000600868 ARHGAP35Q9NRY4 1499 aa23.04■■□□□ 1.28
UPF1-211ENST00000600868 KIAA0556O60303 1618 aa23.04■■□□□ 1.28
UPF1-211ENST00000600868 ERCC6L2Q5T890 1561 aa23.01■■□□□ 1.27
UPF1-211ENST00000600868 P3H3Q8IVL6 736 aa22.97■■□□□ 1.27
UPF1-211ENST00000600868 ARHGEF11O15085 1522 aa22.97■■□□□ 1.27
UPF1-211ENST00000600868 FHOD3Q2V2M9 1422 aa22.94■■□□□ 1.26
UPF1-211ENST00000600868 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
UPF1-211ENST00000600868 RIMBP3CA6NJZ7 1639 aa22.9■■□□□ 1.26
UPF1-211ENST00000600868 RIMBP3BA6NNM3 1639 aa22.9■■□□□ 1.26
UPF1-211ENST00000600868 RIMBP3Q9UFD9 1639 aa22.9■■□□□ 1.26
UPF1-211ENST00000600868 PTPRGP23470 1445 aa22.9■■□□□ 1.26
UPF1-211ENST00000600868 DNAJC5Q9H3Z4 198 aa22.89■■□□□ 1.25
UPF1-211ENST00000600868 FMN1Q68DA7 1419 aa22.86■■□□□ 1.25
UPF1-211ENST00000600868 TTBK1Q5TCY1 1321 aaPredicted RBP22.81■■□□□ 1.24
UPF1-211ENST00000600868 VPS8Q8N3P4 1428 aa22.79■■□□□ 1.24
UPF1-211ENST00000600868 ABCA8O94911 1581 aa22.76■■□□□ 1.23
UPF1-211ENST00000600868 UACAQ9BZF9 1416 aa22.75■■□□□ 1.23
UPF1-211ENST00000600868 PLB1Q6P1J6 1458 aa22.75■■□□□ 1.23
UPF1-211ENST00000600868 CASKIN1Q8WXD9 1431 aa22.74■■□□□ 1.23
UPF1-211ENST00000600868 RAPGEF6Q8TEU7 1601 aa22.73■■□□□ 1.23
UPF1-211ENST00000600868 UHRF1BP1LA0JNW5 1464 aa22.73■■□□□ 1.23
UPF1-211ENST00000600868 CYB5RLQ6IPT4 315 aa22.72■■□□□ 1.23
UPF1-211ENST00000600868 ABCC2Q92887 1545 aa22.71■■□□□ 1.23
UPF1-211ENST00000600868 PCF11O94913 1555 aaKnown RBP22.71■■□□□ 1.23
UPF1-211ENST00000600868 FYCO1Q9BQS8 1478 aa22.7■■□□□ 1.22
UPF1-211ENST00000600868 HECW1Q76N89 1606 aa22.67■■□□□ 1.22
UPF1-211ENST00000600868 NUP153P49790 1475 aaKnown RBP22.66■■□□□ 1.22
UPF1-211ENST00000600868 ADCY10Q96PN6 1610 aa22.66■■□□□ 1.22
UPF1-211ENST00000600868 ATP1B4Q9UN42 357 aaPredicted RBP22.63■■□□□ 1.21
UPF1-211ENST00000600868 KDM5BQ9UGL1 1544 aa22.61■■□□□ 1.21
UPF1-211ENST00000600868 EPRSP07814 1512 aaKnown RBP22.6■■□□□ 1.21
UPF1-211ENST00000600868 ATP10BO94823 1461 aa22.59■■□□□ 1.21
UPF1-211ENST00000600868 CCDC18Q5T9S5 1454 aa22.59■■□□□ 1.21
UPF1-211ENST00000600868 LRRIQ1Q96JM4 1722 aa22.57■■□□□ 1.2
UPF1-211ENST00000600868 MAP3K1Q13233 1512 aa22.55■■□□□ 1.2
UPF1-211ENST00000600868 NPM1P06748 294 aaKnown RBP eCLIP22.54■■□□□ 1.2
UPF1-211ENST00000600868 ZCCHC11Q5TAX3 1644 aaKnown RBP22.53■■□□□ 1.2
UPF1-211ENST00000600868 CDK13Q14004 1512 aaKnown RBP22.53■■□□□ 1.2
UPF1-211ENST00000600868 ARID3CA6NKF2 412 aa22.53■■□□□ 1.2
UPF1-211ENST00000600868 APLP2Q06481 763 aa22.52■■□□□ 1.2
UPF1-211ENST00000600868 TIAM1Q13009 1591 aa22.5■■□□□ 1.19
UPF1-211ENST00000600868 CFAP43Q8NDM7 1665 aa22.5■■□□□ 1.19
UPF1-211ENST00000600868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.49■■□□□ 1.19
UPF1-211ENST00000600868 HNRNPUL2Q1KMD3 747 aaKnown RBP22.49■■□□□ 1.19
UPF1-211ENST00000600868 CDK11AQ9UQ88 783 aaPredicted RBP22.48■■□□□ 1.19
UPF1-211ENST00000600868 PLEKHD1A6NEE1 506 aa22.44■■□□□ 1.18
UPF1-211ENST00000600868 MAPKBP1O60336 1514 aa22.43■■□□□ 1.18
UPF1-211ENST00000600868 ASXL2Q76L83 1435 aa22.41■■□□□ 1.18
UPF1-211ENST00000600868 LRRC9Q6ZRR7 1453 aa22.41■■□□□ 1.18
UPF1-211ENST00000600868 MAGI3Q5TCQ9 1506 aa22.4■■□□□ 1.18
UPF1-211ENST00000600868 TROQ12816 1431 aaPredicted RBP22.4■■□□□ 1.18
UPF1-211ENST00000600868 KANK4Q5T7N3 995 aaPredicted RBP22.39■■□□□ 1.17
UPF1-211ENST00000600868 WDR7Q9Y4E6 1490 aa22.39■■□□□ 1.17
UPF1-211ENST00000600868 MTUS2Q5JR59 1369 aa22.38■■□□□ 1.17
UPF1-211ENST00000600868 EHBP1L1Q8N3D4 1523 aa22.37■■□□□ 1.17
UPF1-211ENST00000600868 KIF14Q15058 1648 aa22.29■■□□□ 1.16
UPF1-211ENST00000600868 KCNH8Q96L42 1107 aa22.29■■□□□ 1.16
UPF1-211ENST00000600868 SUPT6HQ7KZ85 1726 aaKnown RBP22.28■■□□□ 1.16
UPF1-211ENST00000600868 ABCC10Q5T3U5 1492 aa22.26■■□□□ 1.15
UPF1-211ENST00000600868 PPARGC1BQ86YN6 1023 aaKnown RBP22.25■■□□□ 1.15
UPF1-211ENST00000600868 NCOA2Q15596 1464 aa22.24■■□□□ 1.15
UPF1-211ENST00000600868 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.23■■□□□ 1.15
UPF1-211ENST00000600868 GLI2P10070 1586 aa22.23■■□□□ 1.15
UPF1-211ENST00000600868 DIP2BQ9P265 1576 aa22.22■■□□□ 1.15
UPF1-211ENST00000600868 ABCA9Q8IUA7 1624 aa22.21■■□□□ 1.15
UPF1-211ENST00000600868 TTC37Q6PGP7 1564 aa22.19■■□□□ 1.14
UPF1-211ENST00000600868 FAM69CQ0P6D2 419 aa22.18■■□□□ 1.14
UPF1-211ENST00000600868 CCNB3Q8WWL7 1395 aa22.16■■□□□ 1.14
UPF1-211ENST00000600868 KIF13AQ9H1H9 1805 aa22.15■■□□□ 1.14
UPF1-211ENST00000600868 GPATCH8Q9UKJ3 1502 aaKnown RBP22.15■■□□□ 1.14
UPF1-211ENST00000600868 PHLDB1Q86UU1 1377 aa22.14■■□□□ 1.14
UPF1-211ENST00000600868 MAP3K4Q9Y6R4 1608 aa22.14■■□□□ 1.14
UPF1-211ENST00000600868 CDC42BPAQ5VT25 1732 aa22.13■■□□□ 1.13
UPF1-211ENST00000600868 MYOM3Q5VTT5 1437 aa22.13■■□□□ 1.13
UPF1-211ENST00000600868 CD109Q6YHK3 1445 aa22.13■■□□□ 1.13
UPF1-211ENST00000600868 MYO5CQ9NQX4 1742 aa22.12■■□□□ 1.13
UPF1-211ENST00000600868 PLCH2O75038 1416 aa22.12■■□□□ 1.13
UPF1-211ENST00000600868 ARAP3Q8WWN8 1544 aa22.11■■□□□ 1.13
UPF1-211ENST00000600868 ITSN2Q9NZM3 1697 aa22.11■■□□□ 1.13
UPF1-211ENST00000600868 PREX2Q70Z35 1606 aa22.1■■□□□ 1.13
UPF1-211ENST00000600868 MIA2Q96PC5 1412 aa22.08■■□□□ 1.13
UPF1-211ENST00000600868 CDC42BPBQ9Y5S2 1711 aa22.08■■□□□ 1.12
UPF1-211ENST00000600868 TRHP20396 242 aaPredicted RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms