RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 FAM9BQ8IZU0 186 aa17.44■□□□□ 0.38
USHBP1-207ENST00000597928 MTUS2Q5JR59 1369 aa17.43■□□□□ 0.38
USHBP1-207ENST00000597928 ARAP1Q96P48 1450 aa17.42■□□□□ 0.38
USHBP1-207ENST00000597928 ERICH6Q7L0X2 663 aa17.41■□□□□ 0.38
USHBP1-207ENST00000597928 BICRAQ9NZM4 1560 aa17.39■□□□□ 0.38
USHBP1-207ENST00000597928 EIF4G1Q04637 1599 aaKnown RBP17.39■□□□□ 0.37
USHBP1-207ENST00000597928 TDRD9Q8NDG6 1382 aaKnown RBP17.38■□□□□ 0.37
USHBP1-207ENST00000597928 FHOD3Q2V2M9 1422 aa17.38■□□□□ 0.37
USHBP1-207ENST00000597928 SALL2Q9Y467 1007 aaPredicted RBP17.35■□□□□ 0.37
USHBP1-207ENST00000597928 UNC13AQ9UPW8 1703 aa17.35■□□□□ 0.37
USHBP1-207ENST00000597928 IGF1RP08069 1367 aa17.32■□□□□ 0.36
USHBP1-207ENST00000597928 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
USHBP1-207ENST00000597928 SETD5Q9C0A6 1442 aa17.3■□□□□ 0.36
USHBP1-207ENST00000597928 PHLDB1Q86UU1 1377 aa17.29■□□□□ 0.36
USHBP1-207ENST00000597928 MYT1Q01538 1121 aa17.27■□□□□ 0.35
USHBP1-207ENST00000597928 RAD54L2Q9Y4B4 1467 aa17.26■□□□□ 0.35
USHBP1-207ENST00000597928 KDM2AQ9Y2K7 1162 aa17.26■□□□□ 0.35
USHBP1-207ENST00000597928 CLSPNQ9HAW4 1339 aa17.25■□□□□ 0.35
USHBP1-207ENST00000597928 ARHGAP35Q9NRY4 1499 aa17.24■□□□□ 0.35
USHBP1-207ENST00000597928 CUX1P39880 1505 aa17.23■□□□□ 0.35
USHBP1-207ENST00000597928 TSHZ2Q9NRE2 1034 aa17.23■□□□□ 0.35
USHBP1-207ENST00000597928 PPP1R15AO75807 674 aaPredicted RBP17.22■□□□□ 0.35
USHBP1-207ENST00000597928 CADPSQ9ULU8 1353 aa17.22■□□□□ 0.35
USHBP1-207ENST00000597928 MRS2Q9HD23 443 aa17.2■□□□□ 0.34
USHBP1-207ENST00000597928 PRXQ9BXM0 1461 aa17.2■□□□□ 0.34
USHBP1-207ENST00000597928 MYT1LQ9UL68 1186 aa17.2■□□□□ 0.34
USHBP1-207ENST00000597928 SLC4A1APQ9BWU0 796 aaKnown RBP17.18■□□□□ 0.34
USHBP1-207ENST00000597928 FGD5Q6ZNL6 1462 aa17.17■□□□□ 0.34
USHBP1-207ENST00000597928 HSPA5P11021 654 aaKnown RBP17.15■□□□□ 0.34
USHBP1-207ENST00000597928 NESP48681 1621 aa17.13■□□□□ 0.33
USHBP1-207ENST00000597928 EIF4G2P78344 907 aaKnown RBP eCLIP17.13■□□□□ 0.33
USHBP1-207ENST00000597928 CDK11AQ9UQ88 783 aaPredicted RBP17.13■□□□□ 0.33
USHBP1-207ENST00000597928 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
USHBP1-207ENST00000597928 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.12■□□□□ 0.33
USHBP1-207ENST00000597928 FHAD1B1AJZ9 1412 aa17.1■□□□□ 0.33
USHBP1-207ENST00000597928 B4GALNT3Q6L9W6 998 aa17.09■□□□□ 0.33
USHBP1-207ENST00000597928 SENP3Q9H4L4 574 aaPredicted RBP17.08■□□□□ 0.33
USHBP1-207ENST00000597928 RGL3Q3MIN7 710 aa17.08■□□□□ 0.32
USHBP1-207ENST00000597928 NCAPD3P42695 1498 aa17.08■□□□□ 0.32
USHBP1-207ENST00000597928 L3MBTL2Q969R5 705 aa17.07■□□□□ 0.32
USHBP1-207ENST00000597928 FANCD2Q9BXW9 1451 aa17.06■□□□□ 0.32
USHBP1-207ENST00000597928 ZNF644Q9H582 1327 aaPredicted RBP17.06■□□□□ 0.32
USHBP1-207ENST00000597928 RRBP1Q9P2E9 1410 aaKnown RBP17.06■□□□□ 0.32
USHBP1-207ENST00000597928 CFTRP13569 1480 aa17.04■□□□□ 0.32
USHBP1-207ENST00000597928 CHMP7Q8WUX9 453 aaPredicted RBP17.04■□□□□ 0.32
USHBP1-207ENST00000597928 LRRC9Q6ZRR7 1453 aa17.04■□□□□ 0.32
USHBP1-207ENST00000597928 RBM19Q9Y4C8 960 aaKnown RBP17.03■□□□□ 0.32
USHBP1-207ENST00000597928 WDR97A6NE52 1622 aa17.03■□□□□ 0.32
USHBP1-207ENST00000597928 CCDC184Q52MB2 194 aa17.03■□□□□ 0.32
USHBP1-207ENST00000597928 NPM2Q86SE8 214 aaKnown RBP17.03■□□□□ 0.32
USHBP1-207ENST00000597928 MPHOSPH9Q99550 1183 aa17.02■□□□□ 0.32
USHBP1-207ENST00000597928 CFDP1Q9UEE9 299 aaPredicted RBP17■□□□□ 0.31
USHBP1-207ENST00000597928 NBR1Q14596 966 aa16.98■□□□□ 0.31
USHBP1-207ENST00000597928 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
USHBP1-207ENST00000597928 TMC1Q8TDI8 760 aa16.96■□□□□ 0.31
USHBP1-207ENST00000597928 ANP32EQ9BTT0 268 aa16.95■□□□□ 0.3
USHBP1-207ENST00000597928 PEG3Q9GZU2 1588 aa16.93■□□□□ 0.3
USHBP1-207ENST00000597928 CCDC18Q5T9S5 1454 aa16.92■□□□□ 0.3
USHBP1-207ENST00000597928 CCER2I3L3R5 266 aa16.9■□□□□ 0.3
USHBP1-207ENST00000597928 WASHC2AQ641Q2 1341 aa16.9■□□□□ 0.3
USHBP1-207ENST00000597928 PKD2Q13563 968 aa16.89■□□□□ 0.3
USHBP1-207ENST00000597928 FGD6Q6ZV73 1430 aa16.89■□□□□ 0.29
USHBP1-207ENST00000597928 CCDC136Q96JN2 1154 aa16.89■□□□□ 0.29
USHBP1-207ENST00000597928 FMN1Q68DA7 1419 aa16.89■□□□□ 0.29
USHBP1-207ENST00000597928 PDS5BQ9NTI5 1447 aa16.89■□□□□ 0.29
USHBP1-207ENST00000597928 AQRO60306 1485 aaKnown RBP eCLIP16.88■□□□□ 0.29
USHBP1-207ENST00000597928 C11orf95C9JLR9 678 aaPredicted RBP16.88■□□□□ 0.29
USHBP1-207ENST00000597928 CARD11Q9BXL7 1154 aa16.88■□□□□ 0.29
USHBP1-207ENST00000597928 TIAM1Q13009 1591 aa16.87■□□□□ 0.29
USHBP1-207ENST00000597928 TSPY4P0CV99 314 aa16.87■□□□□ 0.29
USHBP1-207ENST00000597928 TSPY10P0CW01 314 aa16.87■□□□□ 0.29
USHBP1-207ENST00000597928 DCAF11Q8TEB1 546 aa16.87■□□□□ 0.29
USHBP1-207ENST00000597928 TIMELESSQ9UNS1 1208 aa16.85■□□□□ 0.29
USHBP1-207ENST00000597928 POLA1P09884 1462 aaPredicted RBP16.84■□□□□ 0.29
USHBP1-207ENST00000597928 NBPF8Q3BBV2 869 aa16.84■□□□□ 0.29
USHBP1-207ENST00000597928 MAPKBP1O60336 1514 aa16.84■□□□□ 0.29
USHBP1-207ENST00000597928 PTPRKQ15262 1439 aa16.82■□□□□ 0.28
USHBP1-207ENST00000597928 PLEKHD1A6NEE1 506 aa16.82■□□□□ 0.28
USHBP1-207ENST00000597928 CC2D1BQ5T0F9 858 aaKnown RBP16.82■□□□□ 0.28
USHBP1-207ENST00000597928 PCF11O94913 1555 aaKnown RBP16.81■□□□□ 0.28
USHBP1-207ENST00000597928 HNRNPMP52272 730 aaKnown RBP eCLIP16.81■□□□□ 0.28
USHBP1-207ENST00000597928 NCOA2Q15596 1464 aa16.79■□□□□ 0.28
USHBP1-207ENST00000597928 GAPVD1Q14C86 1478 aa16.79■□□□□ 0.28
USHBP1-207ENST00000597928 PRKRIP1Q9H875 184 aaPredicted RBP16.79■□□□□ 0.28
USHBP1-207ENST00000597928 CC2D2AQ9P2K1 1620 aa16.78■□□□□ 0.28
USHBP1-207ENST00000597928 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
USHBP1-207ENST00000597928 BCL11AQ9H165 835 aa16.78■□□□□ 0.28
USHBP1-207ENST00000597928 TOPBP1Q92547 1522 aa16.77■□□□□ 0.28
USHBP1-207ENST00000597928 HMGXB3Q12766 1538 aa16.77■□□□□ 0.27
USHBP1-207ENST00000597928 CASKIN1Q8WXD9 1431 aa16.76■□□□□ 0.27
USHBP1-207ENST00000597928 CHGAP10645 457 aaKnown RBP16.76■□□□□ 0.27
USHBP1-207ENST00000597928 PPP4R2Q9NY27 417 aa16.74■□□□□ 0.27
USHBP1-207ENST00000597928 MYOM3Q5VTT5 1437 aa16.74■□□□□ 0.27
USHBP1-207ENST00000597928 UACAQ9BZF9 1416 aa16.73■□□□□ 0.27
USHBP1-207ENST00000597928 ST20-MTHFSA0A0A6YYL1 179 aa16.72■□□□□ 0.27
USHBP1-207ENST00000597928 KIF7Q2M1P5 1343 aa16.71■□□□□ 0.27
USHBP1-207ENST00000597928 NUP155O75694 1391 aa16.71■□□□□ 0.27
USHBP1-207ENST00000597928 NAIPQ13075 1403 aa16.71■□□□□ 0.26
USHBP1-207ENST00000597928 CDK13Q14004 1512 aaKnown RBP16.69■□□□□ 0.26
USHBP1-207ENST00000597928 RTL5Q5HYW3 569 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms