RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 KIAA0586Q9BVV6 1533 aa43.01■■■■■ 4.48
TRIM28-204ENST00000594806 SHROOM2Q13796 1616 aa43■■■■■ 4.47
TRIM28-204ENST00000594806 PRXQ9BXM0 1461 aa42.99■■■■■ 4.47
TRIM28-204ENST00000594806 JPH4Q96JJ6 628 aa42.92■■■■■ 4.46
TRIM28-204ENST00000594806 ARAP1Q96P48 1450 aa42.83■■■■■ 4.45
TRIM28-204ENST00000594806 PRG4Q92954 1404 aaPredicted RBP42.79■■■■■ 4.44
TRIM28-204ENST00000594806 CYB5RLQ6IPT4 315 aa42.77■■■■■ 4.44
TRIM28-204ENST00000594806 FAM9AQ8IZU1 332 aaPredicted RBP42.77■■■■■ 4.44
TRIM28-204ENST00000594806 IQGAP2Q13576 1575 aa42.76■■■■■ 4.44
TRIM28-204ENST00000594806 ERCC6L2Q5T890 1561 aa42.72■■■■■ 4.43
TRIM28-204ENST00000594806 CTTNBP2Q8WZ74 1663 aa42.67■■■■■ 4.42
TRIM28-204ENST00000594806 KIF21BO75037 1637 aa42.63■■■■■ 4.41
TRIM28-204ENST00000594806 CARMIL2Q6F5E8 1435 aa42.57■■■■■ 4.41
TRIM28-204ENST00000594806 UGGT2Q9NYU1 1516 aa42.56■■■■■ 4.4
TRIM28-204ENST00000594806 DISP1Q96F81 1524 aa42.41■■■■■ 4.38
TRIM28-204ENST00000594806 TNIKQ9UKE5 1360 aa42.39■■■■■ 4.38
TRIM28-204ENST00000594806 GOLGA3Q08378 1498 aa42.38■■■■■ 4.38
TRIM28-204ENST00000594806 KIAA0556O60303 1618 aa42.33■■■■■ 4.37
TRIM28-204ENST00000594806 PTPRGP23470 1445 aa42.33■■■■■ 4.37
TRIM28-204ENST00000594806 UBTFP17480 764 aaKnown RBP42.24■■■■■ 4.35
TRIM28-204ENST00000594806 SAMD9Q5K651 1589 aa42.13■■■■■ 4.33
TRIM28-204ENST00000594806 EHMT2Q96KQ7 1210 aa42.11■■■■■ 4.33
TRIM28-204ENST00000594806 TTBK1Q5TCY1 1321 aaPredicted RBP42.1■■■■■ 4.33
TRIM28-204ENST00000594806 ADCY10Q96PN6 1610 aa42.08■■■■■ 4.33
TRIM28-204ENST00000594806 UACAQ9BZF9 1416 aa42.06■■■■■ 4.32
TRIM28-204ENST00000594806 NPM1P06748 294 aaKnown RBP eCLIP42.05■■■■■ 4.32
TRIM28-204ENST00000594806 UHRF1BP1LA0JNW5 1464 aa42.04■■■■■ 4.32
TRIM28-204ENST00000594806 EFCAB5A4FU69 1503 aa42.03■■■■■ 4.32
TRIM28-204ENST00000594806 ABCC2Q92887 1545 aa41.97■■■■■ 4.31
TRIM28-204ENST00000594806 RANGAP1P46060 587 aaPredicted RBP41.96■■■■■ 4.31
TRIM28-204ENST00000594806 P3H3Q8IVL6 736 aa41.96■■■■■ 4.31
TRIM28-204ENST00000594806 ABCA8O94911 1581 aa41.87■■■■■ 4.29
TRIM28-204ENST00000594806 PLB1Q6P1J6 1458 aa41.86■■■■■ 4.29
TRIM28-204ENST00000594806 MAPKBP1O60336 1514 aa41.86■■■■■ 4.29
TRIM28-204ENST00000594806 TRHP20396 242 aaPredicted RBP41.84■■■■■ 4.29
TRIM28-204ENST00000594806 FHOD3Q2V2M9 1422 aa41.82■■■■■ 4.29
TRIM28-204ENST00000594806 KDM5BQ9UGL1 1544 aa41.81■■■■■ 4.28
TRIM28-204ENST00000594806 ARHGAP35Q9NRY4 1499 aa41.77■■■■■ 4.28
TRIM28-204ENST00000594806 RAPGEF6Q8TEU7 1601 aa41.69■■■■■ 4.27
TRIM28-204ENST00000594806 ZCCHC11Q5TAX3 1644 aaKnown RBP41.68■■■■■ 4.26
TRIM28-204ENST00000594806 FMN1Q68DA7 1419 aa41.65■■■■■ 4.26
TRIM28-204ENST00000594806 ABCC10Q5T3U5 1492 aa41.62■■■■■ 4.25
TRIM28-204ENST00000594806 ASXL2Q76L83 1435 aa41.61■■■■■ 4.25
TRIM28-204ENST00000594806 CLIP1P30622 1438 aa41.6■■■■■ 4.25
TRIM28-204ENST00000594806 KIF13AQ9H1H9 1805 aa41.55■■■■■ 4.24
TRIM28-204ENST00000594806 LOC105371045A0A1W2PR82 267 aa41.53■■■■■ 4.24
TRIM28-204ENST00000594806 DIP2BQ9P265 1576 aa41.53■■■■■ 4.24
TRIM28-204ENST00000594806 ATP10BO94823 1461 aa41.53■■■■■ 4.24
TRIM28-204ENST00000594806 NUP153P49790 1475 aaKnown RBP41.51■■■■■ 4.24
TRIM28-204ENST00000594806 FAM69CQ0P6D2 419 aa41.5■■■■■ 4.23
TRIM28-204ENST00000594806 WDR7Q9Y4E6 1490 aa41.46■■■■■ 4.23
TRIM28-204ENST00000594806 CEP162Q5TB80 1403 aa41.44■■■■■ 4.22
TRIM28-204ENST00000594806 GLI2P10070 1586 aa41.42■■■■■ 4.22
TRIM28-204ENST00000594806 HECW1Q76N89 1606 aa41.39■■■■■ 4.22
TRIM28-204ENST00000594806 ARID3CA6NKF2 412 aa41.38■■■■■ 4.21
TRIM28-204ENST00000594806 EPRSP07814 1512 aaKnown RBP41.38■■■■■ 4.21
TRIM28-204ENST00000594806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP41.36■■■■■ 4.21
TRIM28-204ENST00000594806 HNRNPUL2Q1KMD3 747 aaKnown RBP41.36■■■■■ 4.21
TRIM28-204ENST00000594806 CASKIN1Q8WXD9 1431 aa41.31■■■■■ 4.2
TRIM28-204ENST00000594806 ATP1B4Q9UN42 357 aaPredicted RBP41.28■■■■■ 4.2
TRIM28-204ENST00000594806 PLEKHD1A6NEE1 506 aa41.25■■■■■ 4.19
TRIM28-204ENST00000594806 PCF11O94913 1555 aaKnown RBP41.22■■■■■ 4.19
TRIM28-204ENST00000594806 KCNH8Q96L42 1107 aa41.22■■■■■ 4.19
TRIM28-204ENST00000594806 FYCO1Q9BQS8 1478 aa41.21■■■■■ 4.19
TRIM28-204ENST00000594806 CDK13Q14004 1512 aaKnown RBP41.18■■■■■ 4.18
TRIM28-204ENST00000594806 CDK11AQ9UQ88 783 aaPredicted RBP41.18■■■■■ 4.18
TRIM28-204ENST00000594806 MAP3K4Q9Y6R4 1608 aa41.18■■■■■ 4.18
TRIM28-204ENST00000594806 CCDC18Q5T9S5 1454 aa41.15■■■■■ 4.18
TRIM28-204ENST00000594806 TSPOAP1O95153 1857 aa41.15■■■■■ 4.18
TRIM28-204ENST00000594806 CFAP43Q8NDM7 1665 aa41.13■■■■■ 4.18
TRIM28-204ENST00000594806 LRRIQ1Q96JM4 1722 aa41.1■■■■■ 4.17
TRIM28-204ENST00000594806 CD109Q6YHK3 1445 aa41.06■■■■■ 4.16
TRIM28-204ENST00000594806 ABCA9Q8IUA7 1624 aa41.06■■■■■ 4.16
TRIM28-204ENST00000594806 TEX14Q8IWB6 1497 aa41.04■■■■■ 4.16
TRIM28-204ENST00000594806 PPRC1Q5VV67 1664 aaKnown RBP41.04■■■■■ 4.16
TRIM28-204ENST00000594806 MAGI3Q5TCQ9 1506 aa41■■■■■ 4.15
TRIM28-204ENST00000594806 TROQ12816 1431 aaPredicted RBP40.96■■■■■ 4.15
TRIM28-204ENST00000594806 VPS8Q8N3P4 1428 aa40.96■■■■■ 4.15
TRIM28-204ENST00000594806 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP40.88■■■■■ 4.142e-7■■■□□ 18.9
TRIM28-204ENST00000594806 KIF14Q15058 1648 aa40.85■■■■■ 4.13
TRIM28-204ENST00000594806 KDM6BO15054 1643 aa40.82■■■■■ 4.13
TRIM28-204ENST00000594806 PHLDB1Q86UU1 1377 aa40.81■■■■■ 4.12
TRIM28-204ENST00000594806 TTC37Q6PGP7 1564 aa40.79■■■■■ 4.12
TRIM28-204ENST00000594806 NEO1Q92859 1461 aa40.74■■■■■ 4.11
TRIM28-204ENST00000594806 MTUS2Q5JR59 1369 aa40.71■■■■■ 4.11
TRIM28-204ENST00000594806 PLCH2O75038 1416 aa40.7■■■■■ 4.11
TRIM28-204ENST00000594806 ARAP3Q8WWN8 1544 aa40.68■■■■■ 4.1
TRIM28-204ENST00000594806 MYO5CQ9NQX4 1742 aa40.68■■■■■ 4.1
TRIM28-204ENST00000594806 MAP3K1Q13233 1512 aa40.67■■■■■ 4.1
TRIM28-204ENST00000594806 CFAP74Q9C0B2 1584 aa40.67■■■■■ 4.1
TRIM28-204ENST00000594806 TIAM1Q13009 1591 aa40.65■■■■■ 4.1
TRIM28-204ENST00000594806 EHBP1L1Q8N3D4 1523 aa40.64■■■■■ 4.1
TRIM28-204ENST00000594806 FANCAO15360 1455 aa40.64■■■■■ 4.1
TRIM28-204ENST00000594806 COL17A1Q9UMD9 1497 aaPredicted RBP40.63■■■■■ 4.09
TRIM28-204ENST00000594806 APLP2Q06481 763 aa40.56■■■■■ 4.08
TRIM28-204ENST00000594806 EFCAB2Q5VUJ9 269 aa40.56■■■■■ 4.08
TRIM28-204ENST00000594806 AKNAQ7Z591 1439 aa40.56■■■■■ 4.08
TRIM28-204ENST00000594806 PREX2Q70Z35 1606 aa40.5■■■■■ 4.07
TRIM28-204ENST00000594806 ARHGAP5Q13017 1502 aa40.49■■■■■ 4.07
TRIM28-204ENST00000594806 CDC42BPBQ9Y5S2 1711 aa40.49■■■■■ 4.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms