RNA–Protein interactions for RNA: ENST00000592991.1

LDLRAD4-218, Transcript of low density lipoprotein receptor class A domain containing 4, human

TSL 1 (best) BASIC

Gene LDLRAD4, Length 1,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDLRAD4-218	ENST00000592991	CHMP7	Q8WUX9	453 aa	Predicted RBP	41.04	■■■■■ 4.16
LDLRAD4-218	ENST00000592991	CHD1	O14646	1710 aa		40.95	■■■■■ 4.15
LDLRAD4-218	ENST00000592991	CLIP1	P30622	1438 aa		40.94	■■■■■ 4.14
LDLRAD4-218	ENST00000592991	CEP170	Q5SW79	1584 aa		40.89	■■■■■ 4.14
LDLRAD4-218	ENST00000592991	NUP160	Q12769	1436 aa		40.78	■■■■■ 4.12
LDLRAD4-218	ENST00000592991	IQGAP2	Q13576	1575 aa		40.78	■■■■■ 4.12
LDLRAD4-218	ENST00000592991	ARHGAP35	Q9NRY4	1499 aa		40.74	■■■■■ 4.11
LDLRAD4-218	ENST00000592991	KIAA0586	Q9BVV6	1533 aa		40.72	■■■■■ 4.11
LDLRAD4-218	ENST00000592991	ARAP1	Q96P48	1450 aa		40.67	■■■■■ 4.1
LDLRAD4-218	ENST00000592991	P3H3	Q8IVL6	736 aa		40.6	■■■■■ 4.09
LDLRAD4-218	ENST00000592991	SAMD9	Q5K651	1589 aa		40.58	■■■■■ 4.09
LDLRAD4-218	ENST00000592991	EFCAB5	A4FU69	1503 aa		40.58	■■■■■ 4.09
LDLRAD4-218	ENST00000592991	UGGT2	Q9NYU1	1516 aa		40.55	■■■■■ 4.08
LDLRAD4-218	ENST00000592991	FHOD3	Q2V2M9	1422 aa		40.53	■■■■■ 4.08
LDLRAD4-218	ENST00000592991	VPS8	Q8N3P4	1428 aa		40.48	■■■■■ 4.07
LDLRAD4-218	ENST00000592991	CLASP1	Q7Z460	1538 aa		40.43	■■■■■ 4.06
LDLRAD4-218	ENST00000592991	JPH4	Q96JJ6	628 aa		40.42	■■■■■ 4.06
LDLRAD4-218	ENST00000592991	DISP1	Q96F81	1524 aa		40.42	■■■■■ 4.06
LDLRAD4-218	ENST00000592991	KIAA0556	O60303	1618 aa		40.4	■■■■■ 4.06
LDLRAD4-218	ENST00000592991	SHROOM2	Q13796	1616 aa		40.32	■■■■■ 4.05
LDLRAD4-218	ENST00000592991	PRG4	Q92954	1404 aa	Predicted RBP	40.26	■■■■■ 4.04
LDLRAD4-218	ENST00000592991	PCF11	O94913	1555 aa	Known RBP	40.23	■■■■■ 4.03
LDLRAD4-218	ENST00000592991	OSCAR	Q8IYS5	282 aa		40.22	■■■■■ 4.03
LDLRAD4-218	ENST00000592991	CARMIL2	Q6F5E8	1435 aa		40.21	■■■■■ 4.03
LDLRAD4-218	ENST00000592991	TTBK1	Q5TCY1	1321 aa	Predicted RBP	40.21	■■■■■ 4.03
LDLRAD4-218	ENST00000592991	ERCC6L2	Q5T890	1561 aa		40.19	■■■■■ 4.02
LDLRAD4-218	ENST00000592991	FMN1	Q68DA7	1419 aa		40.18	■■■■■ 4.02
LDLRAD4-218	ENST00000592991	PPARGC1B	Q86YN6	1023 aa	Known RBP	40.16	■■■■■ 4.02
LDLRAD4-218	ENST00000592991	CASKIN1	Q8WXD9	1431 aa		40.07	■■■■■ 4.01
LDLRAD4-218	ENST00000592991	ATP1B4	Q9UN42	357 aa	Predicted RBP	40.06	■■■■■ 4
LDLRAD4-218	ENST00000592991	FYCO1	Q9BQS8	1478 aa		40.06	■■■■■ 4
LDLRAD4-218	ENST00000592991	APLP2	Q06481	763 aa		39.98	■■■■□ 3.99
LDLRAD4-218	ENST00000592991	LRRIQ1	Q96JM4	1722 aa		39.97	■■■■□ 3.99
LDLRAD4-218	ENST00000592991	PLB1	Q6P1J6	1458 aa		39.93	■■■■□ 3.98
LDLRAD4-218	ENST00000592991	RAPGEF6	Q8TEU7	1601 aa		39.92	■■■■□ 3.98
LDLRAD4-218	ENST00000592991	PTPRG	P23470	1445 aa		39.92	■■■■□ 3.98
LDLRAD4-218	ENST00000592991	HECW1	Q76N89	1606 aa		39.9	■■■■□ 3.98
LDLRAD4-218	ENST00000592991	TIAM1	Q13009	1591 aa		39.89	■■■■□ 3.98
LDLRAD4-218	ENST00000592991	CFAP43	Q8NDM7	1665 aa		39.88	■■■■□ 3.98
LDLRAD4-218	ENST00000592991	ABCA8	O94911	1581 aa		39.84	■■■■□ 3.97
LDLRAD4-218	ENST00000592991	ARID3C	A6NKF2	412 aa		39.83	■■■■□ 3.97
LDLRAD4-218	ENST00000592991	KANK4	Q5T7N3	995 aa	Predicted RBP	39.83	■■■■□ 3.97
LDLRAD4-218	ENST00000592991	NUP153	P49790	1475 aa	Known RBP	39.81	■■■■□ 3.96
LDLRAD4-218	ENST00000592991	MAP3K1	Q13233	1512 aa		39.8	■■■■□ 3.96
LDLRAD4-218	ENST00000592991	CDK13	Q14004	1512 aa	Known RBP	39.78	■■■■□ 3.96
LDLRAD4-218	ENST00000592991	EPRS	P07814	1512 aa	Known RBP	39.77	■■■■□ 3.96
LDLRAD4-218	ENST00000592991	CCDC18	Q5T9S5	1454 aa		39.72	■■■■□ 3.95
LDLRAD4-218	ENST00000592991	LRRC9	Q6ZRR7	1453 aa		39.69	■■■■□ 3.94
LDLRAD4-218	ENST00000592991	UACA	Q9BZF9	1416 aa		39.69	■■■■□ 3.94
LDLRAD4-218	ENST00000592991	ARHGEF11	O15085	1522 aa		39.65	■■■■□ 3.94
LDLRAD4-218	ENST00000592991	MAGI3	Q5TCQ9	1506 aa		39.61	■■■■□ 3.93
LDLRAD4-218	ENST00000592991	ABCC2	Q92887	1545 aa		39.6	■■■■□ 3.93
LDLRAD4-218	ENST00000592991	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	39.56	■■■■□ 3.92
LDLRAD4-218	ENST00000592991	HNRNPUL2	Q1KMD3	747 aa	Known RBP	39.56	■■■■□ 3.92
LDLRAD4-218	ENST00000592991	ATP10B	O94823	1461 aa		39.55	■■■■□ 3.92
LDLRAD4-218	ENST00000592991	MTUS2	Q5JR59	1369 aa		39.54	■■■■□ 3.92
LDLRAD4-218	ENST00000592991	RIMBP3C	A6NJZ7	1639 aa		39.54	■■■■□ 3.92
LDLRAD4-218	ENST00000592991	RIMBP3B	A6NNM3	1639 aa		39.54	■■■■□ 3.92
LDLRAD4-218	ENST00000592991	RIMBP3	Q9UFD9	1639 aa		39.54	■■■■□ 3.92
LDLRAD4-218	ENST00000592991	ADCY10	Q96PN6	1610 aa		39.5	■■■■□ 3.91
LDLRAD4-218	ENST00000592991	EHBP1L1	Q8N3D4	1523 aa		39.49	■■■■□ 3.91
LDLRAD4-218	ENST00000592991	UHRF1BP1L	A0JNW5	1464 aa		39.49	■■■■□ 3.91
LDLRAD4-218	ENST00000592991	TRIM26	Q12899	539 aa	Predicted RBP	39.47	■■■■□ 3.91
LDLRAD4-218	ENST00000592991	PCGF6	Q9BYE7	350 aa		39.4	■■■■□ 3.9
LDLRAD4-218	ENST00000592991	ZCCHC11	Q5TAX3	1644 aa	Known RBP	39.39	■■■■□ 3.9
LDLRAD4-218	ENST00000592991	SUPT6H	Q7KZ85	1726 aa	Known RBP	39.37	■■■■□ 3.89
LDLRAD4-218	ENST00000592991	KDM5B	Q9UGL1	1544 aa		39.35	■■■■□ 3.89
LDLRAD4-218	ENST00000592991	CDK11A	Q9UQ88	783 aa	Predicted RBP	39.34	■■■■□ 3.89
LDLRAD4-218	ENST00000592991	PHLDB1	Q86UU1	1377 aa		39.34	■■■■□ 3.89
LDLRAD4-218	ENST00000592991	NCOA2	Q15596	1464 aa		39.33	■■■■□ 3.89
LDLRAD4-218	ENST00000592991	TRO	Q12816	1431 aa	Predicted RBP	39.33	■■■■□ 3.89
LDLRAD4-218	ENST00000592991	CYB5RL	Q6IPT4	315 aa		39.28	■■■■□ 3.88
LDLRAD4-218	ENST00000592991	KIF14	Q15058	1648 aa		39.26	■■■■□ 3.88
LDLRAD4-218	ENST00000592991	PLEKHD1	A6NEE1	506 aa		39.26	■■■■□ 3.88
LDLRAD4-218	ENST00000592991	RRBP1	Q9P2E9	1410 aa	Known RBP	39.14	■■■■□ 3.86
LDLRAD4-218	ENST00000592991	MYOM3	Q5VTT5	1437 aa		39.1	■■■■□ 3.85
LDLRAD4-218	ENST00000592991	CCNB3	Q8WWL7	1395 aa		39.08	■■■■□ 3.85
LDLRAD4-218	ENST00000592991	FGD6	Q6ZV73	1430 aa		39.05	■■■■□ 3.84
LDLRAD4-218	ENST00000592991	NPM1	P06748	294 aa	Known RBP eCLIP	39.05	■■■■□ 3.84
LDLRAD4-218	ENST00000592991	ABCC10	Q5T3U5	1492 aa		39.05	■■■■□ 3.84
LDLRAD4-218	ENST00000592991	KCNH8	Q96L42	1107 aa		39.03	■■■■□ 3.84
LDLRAD4-218	ENST00000592991	ASXL2	Q76L83	1435 aa		39.03	■■■■□ 3.84
LDLRAD4-218	ENST00000592991	WDR7	Q9Y4E6	1490 aa		39.03	■■■■□ 3.84
LDLRAD4-218	ENST00000592991	TTC37	Q6PGP7	1564 aa		38.99	■■■■□ 3.83
LDLRAD4-218	ENST00000592991	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	38.97	■■■■□ 3.83
LDLRAD4-218	ENST00000592991	CDC42BPA	Q5VT25	1732 aa		38.97	■■■■□ 3.83
LDLRAD4-218	ENST00000592991	GPATCH8	Q9UKJ3	1502 aa	Known RBP	38.96	■■■■□ 3.83
LDLRAD4-218	ENST00000592991	FAM50A	Q14320	339 aa	Known RBP	38.96	■■■■□ 3.83
LDLRAD4-218	ENST00000592991	PTPN23	Q9H3S7	1636 aa		38.94	■■■■□ 3.82
LDLRAD4-218	ENST00000592991	ITSN2	Q9NZM3	1697 aa		38.94	■■■■□ 3.82
LDLRAD4-218	ENST00000592991	MIA2	Q96PC5	1412 aa		38.87	■■■■□ 3.81
LDLRAD4-218	ENST00000592991	ITGAE	P38570	1179 aa		38.85	■■■■□ 3.81
LDLRAD4-218	ENST00000592991	PREX2	Q70Z35	1606 aa		38.83	■■■■□ 3.81
LDLRAD4-218	ENST00000592991	TCOF1	Q13428	1488 aa	Known RBP	38.83	■■■■□ 3.81
LDLRAD4-218	ENST00000592991	MAPKBP1	O60336	1514 aa		38.82	■■■■□ 3.81
LDLRAD4-218	ENST00000592991	MYO5C	Q9NQX4	1742 aa		38.81	■■■■□ 3.8
LDLRAD4-218	ENST00000592991	CFDP1	Q9UEE9	299 aa	Predicted RBP	38.81	■■■■□ 3.8
LDLRAD4-218	ENST00000592991	CDC42BPB	Q9Y5S2	1711 aa		38.81	■■■■□ 3.8
LDLRAD4-218	ENST00000592991	ZNF644	Q9H582	1327 aa	Predicted RBP	38.8	■■■■□ 3.8
LDLRAD4-218	ENST00000592991	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	38.78	■■■■□ 3.8

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms