RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 FANCD2Q9BXW9 1451 aa17.03■□□□□ 0.32
ZNF540-210ENST00000592533 EFCAB5A4FU69 1503 aa17.03■□□□□ 0.32
ZNF540-210ENST00000592533 PCF11O94913 1555 aaKnown RBP17.02■□□□□ 0.32
ZNF540-210ENST00000592533 CTTNBP2Q8WZ74 1663 aa17.02■□□□□ 0.32
ZNF540-210ENST00000592533 MAPKBP1O60336 1514 aa17■□□□□ 0.31
ZNF540-210ENST00000592533 WDR97A6NE52 1622 aa17■□□□□ 0.31
ZNF540-210ENST00000592533 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.31
ZNF540-210ENST00000592533 FYCO1Q9BQS8 1478 aa16.97■□□□□ 0.31
ZNF540-210ENST00000592533 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
ZNF540-210ENST00000592533 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
ZNF540-210ENST00000592533 POLA1P09884 1462 aaPredicted RBP16.95■□□□□ 0.3
ZNF540-210ENST00000592533 PHLDB1Q86UU1 1377 aa16.93■□□□□ 0.3
ZNF540-210ENST00000592533 SETD5Q9C0A6 1442 aa16.93■□□□□ 0.3
ZNF540-210ENST00000592533 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.93■□□□□ 0.3
ZNF540-210ENST00000592533 YTHDC1Q96MU7 727 aaKnown RBP16.93■□□□□ 0.3
ZNF540-210ENST00000592533 CASKIN1Q8WXD9 1431 aa16.91■□□□□ 0.3
ZNF540-210ENST00000592533 LAMC3Q9Y6N6 1575 aa16.89■□□□□ 0.3
ZNF540-210ENST00000592533 RAD54L2Q9Y4B4 1467 aa16.89■□□□□ 0.29
ZNF540-210ENST00000592533 ABCA5Q8WWZ7 1642 aa16.88■□□□□ 0.29
ZNF540-210ENST00000592533 SAMD9Q5K651 1589 aa16.87■□□□□ 0.29
ZNF540-210ENST00000592533 SNAPC4Q5SXM2 1469 aa16.84■□□□□ 0.29
ZNF540-210ENST00000592533 FHOD3Q2V2M9 1422 aa16.84■□□□□ 0.29
ZNF540-210ENST00000592533 KIF21AQ7Z4S6 1674 aa16.84■□□□□ 0.29
ZNF540-210ENST00000592533 THOC2Q8NI27 1593 aaKnown RBP16.83■□□□□ 0.28
ZNF540-210ENST00000592533 FMN1Q68DA7 1419 aa16.82■□□□□ 0.28
ZNF540-210ENST00000592533 LRRIQ1Q96JM4 1722 aa16.82■□□□□ 0.28
ZNF540-210ENST00000592533 NESP48681 1621 aa16.81■□□□□ 0.28
ZNF540-210ENST00000592533 URB2Q14146 1524 aaKnown RBP16.81■□□□□ 0.28
ZNF540-210ENST00000592533 TIMELESSQ9UNS1 1208 aa16.8■□□□□ 0.28
ZNF540-210ENST00000592533 ITGAEP38570 1179 aa16.78■□□□□ 0.28
ZNF540-210ENST00000592533 FGD6Q6ZV73 1430 aa16.76■□□□□ 0.27
ZNF540-210ENST00000592533 GRIN2BQ13224 1484 aa16.74■□□□□ 0.27
ZNF540-210ENST00000592533 SUPT6HQ7KZ85 1726 aaKnown RBP16.72■□□□□ 0.27
ZNF540-210ENST00000592533 FAM50AQ14320 339 aaKnown RBP16.71■□□□□ 0.27
ZNF540-210ENST00000592533 GAPVD1Q14C86 1478 aa16.71■□□□□ 0.26
ZNF540-210ENST00000592533 PTPN23Q9H3S7 1636 aa16.7■□□□□ 0.26
ZNF540-210ENST00000592533 EHBP1L1Q8N3D4 1523 aa16.7■□□□□ 0.26
ZNF540-210ENST00000592533 TARBP1Q13395 1621 aaKnown RBP16.7■□□□□ 0.26
ZNF540-210ENST00000592533 HFM1A2PYH4 1435 aa16.7■□□□□ 0.26
ZNF540-210ENST00000592533 P3H3Q8IVL6 736 aa16.7■□□□□ 0.26
ZNF540-210ENST00000592533 ARHGEF11O15085 1522 aa16.69■□□□□ 0.26
ZNF540-210ENST00000592533 PDS5BQ9NTI5 1447 aa16.66■□□□□ 0.26
ZNF540-210ENST00000592533 CCDC18Q5T9S5 1454 aa16.66■□□□□ 0.26
ZNF540-210ENST00000592533 PBRM1Q86U86 1689 aa16.66■□□□□ 0.26
ZNF540-210ENST00000592533 MYOM3Q5VTT5 1437 aa16.65■□□□□ 0.26
ZNF540-210ENST00000592533 UGGT2Q9NYU1 1516 aa16.65■□□□□ 0.26
ZNF540-210ENST00000592533 UACAQ9BZF9 1416 aa16.65■□□□□ 0.26
ZNF540-210ENST00000592533 NCOA2Q15596 1464 aa16.65■□□□□ 0.26
ZNF540-210ENST00000592533 GCC2Q8IWJ2 1684 aa16.64■□□□□ 0.25
ZNF540-210ENST00000592533 MTUS2Q5JR59 1369 aa16.63■□□□□ 0.25
ZNF540-210ENST00000592533 SIN3AQ96ST3 1273 aa16.63■□□□□ 0.25
ZNF540-210ENST00000592533 PTPRKQ15262 1439 aa16.62■□□□□ 0.25
ZNF540-210ENST00000592533 TCOF1Q13428 1488 aaKnown RBP16.61■□□□□ 0.25
ZNF540-210ENST00000592533 PPP1R15AO75807 674 aaPredicted RBP16.61■□□□□ 0.25
ZNF540-210ENST00000592533 HECW1Q76N89 1606 aa16.61■□□□□ 0.25
ZNF540-210ENST00000592533 TDRD9Q8NDG6 1382 aaKnown RBP16.6■□□□□ 0.25
ZNF540-210ENST00000592533 SUPT16HQ9Y5B9 1047 aaKnown RBP16.6■□□□□ 0.25
ZNF540-210ENST00000592533 NAIPQ13075 1403 aa16.6■□□□□ 0.25
ZNF540-210ENST00000592533 ATP1B4Q9UN42 357 aaPredicted RBP16.59■□□□□ 0.25
ZNF540-210ENST00000592533 MYT1Q01538 1121 aa16.59■□□□□ 0.25
ZNF540-210ENST00000592533 MAGI3Q5TCQ9 1506 aa16.59■□□□□ 0.25
ZNF540-210ENST00000592533 ADAMTS12P58397 1594 aa16.57■□□□□ 0.24
ZNF540-210ENST00000592533 AKNAQ7Z591 1439 aa16.57■□□□□ 0.24
ZNF540-210ENST00000592533 KDM5BQ9UGL1 1544 aa16.57■□□□□ 0.24
ZNF540-210ENST00000592533 IQGAP2Q13576 1575 aa16.56■□□□□ 0.24
ZNF540-210ENST00000592533 WDR62O43379 1518 aa16.52■□□□□ 0.23
ZNF540-210ENST00000592533 CCER2I3L3R5 266 aa16.52■□□□□ 0.23
ZNF540-210ENST00000592533 TONSLQ96HA7 1378 aa16.51■□□□□ 0.23
ZNF540-210ENST00000592533 DDX10Q13206 875 aaKnown RBP16.5■□□□□ 0.23
ZNF540-210ENST00000592533 KCNH8Q96L42 1107 aa16.5■□□□□ 0.23
ZNF540-210ENST00000592533 EPRSP07814 1512 aaKnown RBP16.5■□□□□ 0.23
ZNF540-210ENST00000592533 MIA2Q96PC5 1412 aa16.49■□□□□ 0.23
ZNF540-210ENST00000592533 DENND4BO75064 1496 aaPredicted RBP16.46■□□□□ 0.23
ZNF540-210ENST00000592533 MRC2Q9UBG0 1479 aa16.45■□□□□ 0.22
ZNF540-210ENST00000592533 KDM6BO15054 1643 aa16.43■□□□□ 0.22
ZNF540-210ENST00000592533 CDK13Q14004 1512 aaKnown RBP16.41■□□□□ 0.22
ZNF540-210ENST00000592533 KIAA0556O60303 1618 aa16.4■□□□□ 0.22
ZNF540-210ENST00000592533 ANP32CO43423 234 aa16.4■□□□□ 0.22
ZNF540-210ENST00000592533 DNMT1P26358 1616 aaKnown RBP16.4■□□□□ 0.22
ZNF540-210ENST00000592533 IFT140Q96RY7 1462 aa16.37■□□□□ 0.21
ZNF540-210ENST00000592533 ROCK1Q13464 1354 aa16.37■□□□□ 0.21
ZNF540-210ENST00000592533 POLR1AO95602 1720 aaPredicted RBP16.37■□□□□ 0.21
ZNF540-210ENST00000592533 DISP1Q96F81 1524 aa16.35■□□□□ 0.21
ZNF540-210ENST00000592533 KIAA0586Q9BVV6 1533 aa16.35■□□□□ 0.21
ZNF540-210ENST00000592533 RAPGEF6Q8TEU7 1601 aa16.35■□□□□ 0.21
ZNF540-210ENST00000592533 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
ZNF540-210ENST00000592533 HIRIP3Q9BW71 556 aaPredicted RBP16.33■□□□□ 0.21
ZNF540-210ENST00000592533 TSHZ2Q9NRE2 1034 aa16.32■□□□□ 0.2
ZNF540-210ENST00000592533 DAPK1P53355 1430 aa16.32■□□□□ 0.2
ZNF540-210ENST00000592533 NUP153P49790 1475 aaKnown RBP16.31■□□□□ 0.2
ZNF540-210ENST00000592533 ADGBQ8N7X0 1667 aa16.31■□□□□ 0.2
ZNF540-210ENST00000592533 ADCY10Q96PN6 1610 aa16.31■□□□□ 0.2
ZNF540-210ENST00000592533 ITSN2Q9NZM3 1697 aa16.3■□□□□ 0.2
ZNF540-210ENST00000592533 RRP7BPQ9NSQ0 103 aa16.3■□□□□ 0.2
ZNF540-210ENST00000592533 RPRD2Q5VT52 1461 aaKnown RBP16.29■□□□□ 0.2
ZNF540-210ENST00000592533 EIF4G3O43432 1585 aaKnown RBP16.29■□□□□ 0.2
ZNF540-210ENST00000592533 CROCC2H7BZ55 1655 aa16.28■□□□□ 0.2
ZNF540-210ENST00000592533 ZNF608Q9ULD9 1512 aaPredicted RBP16.28■□□□□ 0.2
ZNF540-210ENST00000592533 GRIN2AQ12879 1464 aa16.28■□□□□ 0.2
ZNF540-210ENST00000592533 TEX14Q8IWB6 1497 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms