RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 PLPPR3Q6T4P5 718 aa8.82□□□□□ -1
SMAD4-212ENST00000591126 JPH4Q96JJ6 628 aa8.82□□□□□ -1
SMAD4-212ENST00000591126 FMN1Q68DA7 1419 aa8.81□□□□□ -1
SMAD4-212ENST00000591126 CYB5RLQ6IPT4 315 aa8.8□□□□□ -1
SMAD4-212ENST00000591126 CCNB3Q8WWL7 1395 aa8.8□□□□□ -1
SMAD4-212ENST00000591126 TDRD9Q8NDG6 1382 aaKnown RBP8.8□□□□□ -1
SMAD4-212ENST00000591126 PTPRGP23470 1445 aa8.79□□□□□ -1
SMAD4-212ENST00000591126 GRIN2BQ13224 1484 aa8.79□□□□□ -1
SMAD4-212ENST00000591126 HAP1P54257 671 aaPredicted RBP8.78□□□□□ -1
SMAD4-212ENST00000591126 POLR3GLQ9BT43 218 aa8.78□□□□□ -1
SMAD4-212ENST00000591126 ZNF326Q5BKZ1 582 aaKnown RBP8.77□□□□□ -1.01
SMAD4-212ENST00000591126 GAPVD1Q14C86 1478 aa8.76□□□□□ -1.01
SMAD4-212ENST00000591126 EID1Q9Y6B2 187 aa8.75□□□□□ -1.01
SMAD4-212ENST00000591126 RAPGEF2Q9Y4G8 1499 aa8.75□□□□□ -1.01
SMAD4-212ENST00000591126 NPM2Q86SE8 214 aaKnown RBP8.74□□□□□ -1.01
SMAD4-212ENST00000591126 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.74□□□□□ -1.01
SMAD4-212ENST00000591126 CFTRP13569 1480 aa8.74□□□□□ -1.01
SMAD4-212ENST00000591126 CDCA8Q53HL2 280 aa8.74□□□□□ -1.01
SMAD4-212ENST00000591126 POGZQ7Z3K3 1410 aa8.73□□□□□ -1.01
SMAD4-212ENST00000591126 TNIKQ9UKE5 1360 aa8.71□□□□□ -1.01
SMAD4-212ENST00000591126 NEFLP07196 543 aa8.71□□□□□ -1.01
SMAD4-212ENST00000591126 FAM69CQ0P6D2 419 aa8.7□□□□□ -1.02
SMAD4-212ENST00000591126 CCDC18Q5T9S5 1454 aa8.69□□□□□ -1.02
SMAD4-212ENST00000591126 HMGB2P26583 209 aaKnown RBP8.68□□□□□ -1.02
SMAD4-212ENST00000591126 ZBTB47Q9UFB7 747 aaPredicted RBP8.68□□□□□ -1.02
SMAD4-212ENST00000591126 CENPBP07199 599 aaPredicted RBP8.67□□□□□ -1.02
SMAD4-212ENST00000591126 LOC105371045A0A1W2PR82 267 aa8.66□□□□□ -1.02
SMAD4-212ENST00000591126 FGD5Q6ZNL6 1462 aa8.65□□□□□ -1.02
SMAD4-212ENST00000591126 WIZO95785 1651 aa8.65□□□□□ -1.02
SMAD4-212ENST00000591126 SCAF1Q9H7N4 1312 aaKnown RBP8.65□□□□□ -1.02
SMAD4-212ENST00000591126 SPAG9O60271 1321 aaKnown RBP8.65□□□□□ -1.03
SMAD4-212ENST00000591126 TONSLQ96HA7 1378 aa8.64□□□□□ -1.03
SMAD4-212ENST00000591126 DMRT2Q9Y5R5 561 aa8.64□□□□□ -1.03
SMAD4-212ENST00000591126 MAGI1Q96QZ7 1491 aaPredicted RBP8.64□□□□□ -1.03
SMAD4-212ENST00000591126 DNMBPQ6XZF7 1577 aa8.64□□□□□ -1.03
SMAD4-212ENST00000591126 BICRAQ9NZM4 1560 aa8.64□□□□□ -1.03
SMAD4-212ENST00000591126 SYNJ1O43426 1573 aa8.63□□□□□ -1.03
SMAD4-212ENST00000591126 ANKRD30AQ9BXX3 1397 aa8.62□□□□□ -1.03
SMAD4-212ENST00000591126 MLECQ14165 292 aa8.62□□□□□ -1.03
SMAD4-212ENST00000591126 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.62□□□□□ -1.03
SMAD4-212ENST00000591126 DCAF8L1A6NGE4 600 aa8.61□□□□□ -1.03
SMAD4-212ENST00000591126 PPARGC1BQ86YN6 1023 aaKnown RBP8.61□□□□□ -1.03
SMAD4-212ENST00000591126 POGKQ9P215 609 aa8.61□□□□□ -1.03
SMAD4-212ENST00000591126 DNAJC5BQ9UF47 199 aa8.6□□□□□ -1.03
SMAD4-212ENST00000591126 NEUROD1Q13562 356 aa8.6□□□□□ -1.03
SMAD4-212ENST00000591126 PHLDB1Q86UU1 1377 aa8.6□□□□□ -1.03
SMAD4-212ENST00000591126 EIF4G2P78344 907 aaKnown RBP eCLIP8.6□□□□□ -1.03
SMAD4-212ENST00000591126 SYNJ2O15056 1496 aa8.6□□□□□ -1.03
SMAD4-212ENST00000591126 TOPBP1Q92547 1522 aa8.59□□□□□ -1.03
SMAD4-212ENST00000591126 PLEKHH2Q8IVE3 1493 aa8.59□□□□□ -1.03
SMAD4-212ENST00000591126 CHIC2Q9UKJ5 165 aa8.59□□□□□ -1.04
SMAD4-212ENST00000591126 GGT6Q6P531 493 aa8.58□□□□□ -1.04
SMAD4-212ENST00000591126 PRG4Q92954 1404 aaPredicted RBP8.57□□□□□ -1.04
SMAD4-212ENST00000591126 WASHC2CQ9Y4E1 1318 aa8.57□□□□□ -1.04
SMAD4-212ENST00000591126 PEG3Q9GZU2 1588 aa8.57□□□□□ -1.04
SMAD4-212ENST00000591126 UACAQ9BZF9 1416 aa8.57□□□□□ -1.04
SMAD4-212ENST00000591126 CHMP4AQ9BY43 222 aa8.57□□□□□ -1.04
SMAD4-212ENST00000591126 STAC3Q96MF2 364 aa8.56□□□□□ -1.04
SMAD4-212ENST00000591126 AQRO60306 1485 aaKnown RBP eCLIP8.56□□□□□ -1.044e-6■□□□□ 10.8
SMAD4-212ENST00000591126 ARHGAP35Q9NRY4 1499 aa8.56□□□□□ -1.04
SMAD4-212ENST00000591126 PNNQ9H307 717 aaKnown RBP8.55□□□□□ -1.04
SMAD4-212ENST00000591126 TEX14Q8IWB6 1497 aa8.55□□□□□ -1.04
SMAD4-212ENST00000591126 PPP6R1Q9UPN7 881 aa8.54□□□□□ -1.04
SMAD4-212ENST00000591126 CFAP53Q96M91 514 aa8.54□□□□□ -1.04
SMAD4-212ENST00000591126 SNAPC4Q5SXM2 1469 aa8.53□□□□□ -1.04
SMAD4-212ENST00000591126 KIAA0586Q9BVV6 1533 aa8.52□□□□□ -1.04
SMAD4-212ENST00000591126 ANP32CO43423 234 aa8.52□□□□□ -1.05
SMAD4-212ENST00000591126 A0A0G2JS52 829 aa8.52□□□□□ -1.05
SMAD4-212ENST00000591126 KIF3BO15066 747 aa8.52□□□□□ -1.05
SMAD4-212ENST00000591126 MYT1Q01538 1121 aa8.52□□□□□ -1.05
SMAD4-212ENST00000591126 PLB1Q6P1J6 1458 aa8.52□□□□□ -1.05
SMAD4-212ENST00000591126 NESP48681 1621 aa8.51□□□□□ -1.05
SMAD4-212ENST00000591126 IGF1RP08069 1367 aa8.5□□□□□ -1.05
SMAD4-212ENST00000591126 RAD54L2Q9Y4B4 1467 aa8.5□□□□□ -1.05
SMAD4-212ENST00000591126 THEMISQ8N1K5 641 aaPredicted RBP8.5□□□□□ -1.05
SMAD4-212ENST00000591126 POLA1P09884 1462 aaPredicted RBP8.49□□□□□ -1.05
SMAD4-212ENST00000591126 RRP7BPQ9NSQ0 103 aa8.49□□□□□ -1.05
SMAD4-212ENST00000591126 WDR97A6NE52 1622 aa8.49□□□□□ -1.05
SMAD4-212ENST00000591126 EIF3AQ14152 1382 aaKnown RBP8.49□□□□□ -1.05
SMAD4-212ENST00000591126 ABCA10Q8WWZ4 1543 aa8.49□□□□□ -1.05
SMAD4-212ENST00000591126 VGFO15240 615 aaPredicted RBP8.48□□□□□ -1.05
SMAD4-212ENST00000591126 ERICH3Q5RHP9 1530 aa8.48□□□□□ -1.05
SMAD4-212ENST00000591126 MEX3CQ5U5Q3 659 aaKnown RBP8.48□□□□□ -1.05
SMAD4-212ENST00000591126 TIMELESSQ9UNS1 1208 aa8.48□□□□□ -1.05
SMAD4-212ENST00000591126 NUDCQ9Y266 331 aa8.48□□□□□ -1.05
SMAD4-212ENST00000591126 LMOD2Q6P5Q4 547 aa8.47□□□□□ -1.05
SMAD4-212ENST00000591126 EFCAB5A4FU69 1503 aa8.47□□□□□ -1.05
SMAD4-212ENST00000591126 HDGFL2Q7Z4V5 671 aaPredicted RBP8.46□□□□□ -1.05
SMAD4-212ENST00000591126 VPS8Q8N3P4 1428 aa8.46□□□□□ -1.05
SMAD4-212ENST00000591126 TMX4Q9H1E5 349 aaPredicted RBP8.46□□□□□ -1.06
SMAD4-212ENST00000591126 PHF23Q9BUL5 403 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-212ENST00000591126 DAXXQ9UER7 740 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-212ENST00000591126 CANXP27824 592 aaKnown RBP8.45□□□□□ -1.06
SMAD4-212ENST00000591126 ATF3P18847 181 aa8.44□□□□□ -1.06
SMAD4-212ENST00000591126 KDM2AQ9Y2K7 1162 aa8.44□□□□□ -1.06
SMAD4-212ENST00000591126 CUL7Q14999 1698 aa8.44□□□□□ -1.06
SMAD4-212ENST00000591126 SETD5Q9C0A6 1442 aa8.44□□□□□ -1.06
SMAD4-212ENST00000591126 AKNAQ7Z591 1439 aa8.44□□□□□ -1.06
SMAD4-212ENST00000591126 ZBTB7CA1YPR0 619 aa8.43□□□□□ -1.06
SMAD4-212ENST00000591126 CUX1P39880 1505 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms