RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 FAM9AQ8IZU1 332 aaPredicted RBP35.46■■■■□ 3.27
ATG4D-212ENST00000590096 PRXQ9BXM0 1461 aa35.46■■■■□ 3.27
ATG4D-212ENST00000590096 KIAA0586Q9BVV6 1533 aa35.44■■■■□ 3.26
ATG4D-212ENST00000590096 SHROOM2Q13796 1616 aa35.42■■■■□ 3.26
ATG4D-212ENST00000590096 JPH4Q96JJ6 628 aa35.36■■■■□ 3.25
ATG4D-212ENST00000590096 ARAP1Q96P48 1450 aa35.3■■■■□ 3.24
ATG4D-212ENST00000590096 IQGAP2Q13576 1575 aa35.3■■■■□ 3.24
ATG4D-212ENST00000590096 PRG4Q92954 1404 aaPredicted RBP35.29■■■■□ 3.24
ATG4D-212ENST00000590096 ERCC6L2Q5T890 1561 aa35.26■■■■□ 3.24
ATG4D-212ENST00000590096 CYB5RLQ6IPT4 315 aa35.25■■■■□ 3.23
ATG4D-212ENST00000590096 CTTNBP2Q8WZ74 1663 aa35.24■■■■□ 3.23
ATG4D-212ENST00000590096 KIF21BO75037 1637 aa35.21■■■■□ 3.23
ATG4D-212ENST00000590096 CARMIL2Q6F5E8 1435 aa35.09■■■■□ 3.21
ATG4D-212ENST00000590096 UGGT2Q9NYU1 1516 aa35.08■■■■□ 3.21
ATG4D-212ENST00000590096 GOLGA3Q08378 1498 aa35.03■■■■□ 3.2
ATG4D-212ENST00000590096 EHMT2Q96KQ7 1210 aa34.99■■■■□ 3.19
ATG4D-212ENST00000590096 DISP1Q96F81 1524 aa34.99■■■■□ 3.19
ATG4D-212ENST00000590096 KIAA0556O60303 1618 aa34.95■■■■□ 3.18
ATG4D-212ENST00000590096 TNIKQ9UKE5 1360 aa34.94■■■■□ 3.18
ATG4D-212ENST00000590096 UBTFP17480 764 aaKnown RBP34.93■■■■□ 3.18
ATG4D-212ENST00000590096 PTPRGP23470 1445 aa34.89■■■■□ 3.18
ATG4D-212ENST00000590096 TTBK1Q5TCY1 1321 aaPredicted RBP34.87■■■■□ 3.17
ATG4D-212ENST00000590096 TRHP20396 242 aaPredicted RBP34.82■■■■□ 3.16
ATG4D-212ENST00000590096 RANGAP1P46060 587 aaPredicted RBP34.79■■■■□ 3.16
ATG4D-212ENST00000590096 SAMD9Q5K651 1589 aa34.77■■■■□ 3.16
ATG4D-212ENST00000590096 P3H3Q8IVL6 736 aa34.72■■■■□ 3.15
ATG4D-212ENST00000590096 ADCY10Q96PN6 1610 aa34.71■■■■□ 3.15
ATG4D-212ENST00000590096 EFCAB5A4FU69 1503 aa34.68■■■■□ 3.14
ATG4D-212ENST00000590096 UACAQ9BZF9 1416 aa34.66■■■■□ 3.14
ATG4D-212ENST00000590096 NPM1P06748 294 aaKnown RBP eCLIP34.65■■■■□ 3.14
ATG4D-212ENST00000590096 ABCC2Q92887 1545 aa34.61■■■■□ 3.13
ATG4D-212ENST00000590096 UHRF1BP1LA0JNW5 1464 aa34.61■■■■□ 3.13
ATG4D-212ENST00000590096 FHOD3Q2V2M9 1422 aa34.58■■■■□ 3.13
ATG4D-212ENST00000590096 PLB1Q6P1J6 1458 aa34.56■■■■□ 3.12
ATG4D-212ENST00000590096 ABCA8O94911 1581 aa34.53■■■■□ 3.12
ATG4D-212ENST00000590096 ARHGAP35Q9NRY4 1499 aa34.5■■■■□ 3.11
ATG4D-212ENST00000590096 MAPKBP1O60336 1514 aa34.46■■■■□ 3.11
ATG4D-212ENST00000590096 KDM5BQ9UGL1 1544 aa34.45■■■■□ 3.1
ATG4D-212ENST00000590096 RAPGEF6Q8TEU7 1601 aa34.42■■■■□ 3.1
ATG4D-212ENST00000590096 LOC105371045A0A1W2PR82 267 aa34.4■■■■□ 3.1
ATG4D-212ENST00000590096 ZCCHC11Q5TAX3 1644 aaKnown RBP34.4■■■■□ 3.1
ATG4D-212ENST00000590096 CLIP1P30622 1438 aa34.39■■■■□ 3.1
ATG4D-212ENST00000590096 FMN1Q68DA7 1419 aa34.37■■■■□ 3.09
ATG4D-212ENST00000590096 ASXL2Q76L83 1435 aa34.31■■■■□ 3.08
ATG4D-212ENST00000590096 CEP162Q5TB80 1403 aa34.29■■■■□ 3.08
ATG4D-212ENST00000590096 ARID3CA6NKF2 412 aa34.28■■■■□ 3.08
ATG4D-212ENST00000590096 ABCC10Q5T3U5 1492 aa34.27■■■■□ 3.08
ATG4D-212ENST00000590096 NUP153P49790 1475 aaKnown RBP34.26■■■■□ 3.07
ATG4D-212ENST00000590096 KIF13AQ9H1H9 1805 aa34.24■■■■□ 3.07
ATG4D-212ENST00000590096 ATP10BO94823 1461 aa34.24■■■■□ 3.07
ATG4D-212ENST00000590096 DIP2BQ9P265 1576 aa34.23■■■■□ 3.07
ATG4D-212ENST00000590096 FAM69CQ0P6D2 419 aa34.21■■■■□ 3.07
ATG4D-212ENST00000590096 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.19■■■■□ 3.06
ATG4D-212ENST00000590096 HNRNPUL2Q1KMD3 747 aaKnown RBP34.19■■■■□ 3.06
ATG4D-212ENST00000590096 WDR7Q9Y4E6 1490 aa34.19■■■■□ 3.06
ATG4D-212ENST00000590096 HECW1Q76N89 1606 aa34.19■■■■□ 3.06
ATG4D-212ENST00000590096 ATP1B4Q9UN42 357 aaPredicted RBP34.17■■■■□ 3.06
ATG4D-212ENST00000590096 EPRSP07814 1512 aaKnown RBP34.11■■■■□ 3.05
ATG4D-212ENST00000590096 PCF11O94913 1555 aaKnown RBP34.1■■■■□ 3.05
ATG4D-212ENST00000590096 CASKIN1Q8WXD9 1431 aa34.09■■■■□ 3.05
ATG4D-212ENST00000590096 GLI2P10070 1586 aa34.08■■■■□ 3.05
ATG4D-212ENST00000590096 CDK13Q14004 1512 aaKnown RBP34.06■■■■□ 3.04
ATG4D-212ENST00000590096 KCNH8Q96L42 1107 aa34.05■■■■□ 3.04
ATG4D-212ENST00000590096 FYCO1Q9BQS8 1478 aa34.04■■■■□ 3.04
ATG4D-212ENST00000590096 PLEKHD1A6NEE1 506 aa34.01■■■■□ 3.03
ATG4D-212ENST00000590096 TSPOAP1O95153 1857 aa33.97■■■■□ 3.03
ATG4D-212ENST00000590096 CCDC18Q5T9S5 1454 aa33.97■■■■□ 3.03
ATG4D-212ENST00000590096 LRRIQ1Q96JM4 1722 aa33.97■■■■□ 3.03
ATG4D-212ENST00000590096 CDK11AQ9UQ88 783 aaPredicted RBP33.94■■■■□ 3.02
ATG4D-212ENST00000590096 MAP3K4Q9Y6R4 1608 aa33.93■■■■□ 3.02
ATG4D-212ENST00000590096 CFAP43Q8NDM7 1665 aa33.9■■■■□ 3.02
ATG4D-212ENST00000590096 VPS8Q8N3P4 1428 aa33.86■■■■□ 3.01
ATG4D-212ENST00000590096 CD109Q6YHK3 1445 aa33.85■■■■□ 3.01
ATG4D-212ENST00000590096 ABCA9Q8IUA7 1624 aa33.84■■■■□ 3.01
ATG4D-212ENST00000590096 AEBP2Q6ZN18 517 aaPredicted RBP33.84■■■■□ 3.01
ATG4D-212ENST00000590096 PPRC1Q5VV67 1664 aaKnown RBP33.84■■■■□ 3.01
ATG4D-212ENST00000590096 TEX14Q8IWB6 1497 aa33.81■■■■□ 3
ATG4D-212ENST00000590096 TROQ12816 1431 aaPredicted RBP33.79■■■■□ 3
ATG4D-212ENST00000590096 MAGI3Q5TCQ9 1506 aa33.76■■■■□ 3
ATG4D-212ENST00000590096 KIF14Q15058 1648 aa33.74■■■□□ 2.99
ATG4D-212ENST00000590096 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.74■■■□□ 2.99
ATG4D-212ENST00000590096 TTC37Q6PGP7 1564 aa33.7■■■□□ 2.99
ATG4D-212ENST00000590096 KDM6BO15054 1643 aa33.66■■■□□ 2.98
ATG4D-212ENST00000590096 MTUS2Q5JR59 1369 aa33.64■■■□□ 2.98
ATG4D-212ENST00000590096 TIAM1Q13009 1591 aa33.6■■■□□ 2.97
ATG4D-212ENST00000590096 MYO5CQ9NQX4 1742 aa33.58■■■□□ 2.97
ATG4D-212ENST00000590096 EHBP1L1Q8N3D4 1523 aa33.58■■■□□ 2.97
ATG4D-212ENST00000590096 NEO1Q92859 1461 aa33.56■■■□□ 2.96
ATG4D-212ENST00000590096 PLCH2O75038 1416 aa33.54■■■□□ 2.96
ATG4D-212ENST00000590096 PHLDB1Q86UU1 1377 aa33.54■■■□□ 2.96
ATG4D-212ENST00000590096 CFAP74Q9C0B2 1584 aa33.54■■■□□ 2.96
ATG4D-212ENST00000590096 APLP2Q06481 763 aa33.53■■■□□ 2.96
ATG4D-212ENST00000590096 MAP3K1Q13233 1512 aa33.53■■■□□ 2.96
ATG4D-212ENST00000590096 FANCAO15360 1455 aa33.52■■■□□ 2.96
ATG4D-212ENST00000590096 ARAP3Q8WWN8 1544 aa33.5■■■□□ 2.95
ATG4D-212ENST00000590096 COL17A1Q9UMD9 1497 aaPredicted RBP33.47■■■□□ 2.95
ATG4D-212ENST00000590096 LRRC9Q6ZRR7 1453 aa33.45■■■□□ 2.95
ATG4D-212ENST00000590096 ARHGAP5Q13017 1502 aa33.45■■■□□ 2.95
ATG4D-212ENST00000590096 AKNAQ7Z591 1439 aa33.45■■■□□ 2.94
ATG4D-212ENST00000590096 PREX2Q70Z35 1606 aa33.44■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms