RNA–Protein interactions for RNA: ENST00000587700.1

RFX2-209, Transcript of regulatory factor X2, human

TSL 2

Gene RFX2, Length 2,376 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX2-209	ENST00000587700	CFTR	P13569	1480 aa		13.82	□□□□□ -0.2
RFX2-209	ENST00000587700	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.82	□□□□□ -0.2
RFX2-209	ENST00000587700	HAP1	P54257	671 aa	Predicted RBP	13.82	□□□□□ -0.2
RFX2-209	ENST00000587700	CLIP1	P30622	1438 aa		13.81	□□□□□ -0.2
RFX2-209	ENST00000587700	BIVM-ERCC5	R4GMW8	1640 aa		13.79	□□□□□ -0.2
RFX2-209	ENST00000587700	GTF3C3	Q9Y5Q9	886 aa		13.79	□□□□□ -0.2
RFX2-209	ENST00000587700	VPS8	Q8N3P4	1428 aa		13.74	□□□□□ -0.21
RFX2-209	ENST00000587700	CADPS	Q9ULU8	1353 aa		13.72	□□□□□ -0.21
RFX2-209	ENST00000587700	PRX	Q9BXM0	1461 aa		13.71	□□□□□ -0.21
RFX2-209	ENST00000587700	THOC2	Q8NI27	1593 aa	Known RBP	13.71	□□□□□ -0.21
RFX2-209	ENST00000587700	KIF27	Q86VH2	1401 aa		13.69	□□□□□ -0.22
RFX2-209	ENST00000587700	MYT1	Q01538	1121 aa		13.68	□□□□□ -0.22
RFX2-209	ENST00000587700	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.68	□□□□□ -0.22
RFX2-209	ENST00000587700	ERICH3	Q5RHP9	1530 aa		13.64	□□□□□ -0.23
RFX2-209	ENST00000587700	CLSPN	Q9HAW4	1339 aa		13.63	□□□□□ -0.23
RFX2-209	ENST00000587700	NES	P48681	1621 aa		13.62	□□□□□ -0.23
RFX2-209	ENST00000587700	FGD5	Q6ZNL6	1462 aa		13.61	□□□□□ -0.23
RFX2-209	ENST00000587700	ARAP1	Q96P48	1450 aa		13.61	□□□□□ -0.23
RFX2-209	ENST00000587700	MSH5	O43196	834 aa		13.6	□□□□□ -0.23
RFX2-209	ENST00000587700	FKBP8	Q14318	412 aa		13.6	□□□□□ -0.23
RFX2-209	ENST00000587700	IGF1R	P08069	1367 aa		13.6	□□□□□ -0.23
RFX2-209	ENST00000587700	FANCD2	Q9BXW9	1451 aa		13.6	□□□□□ -0.23
RFX2-209	ENST00000587700	KANK4	Q5T7N3	995 aa	Predicted RBP	13.59	□□□□□ -0.23
RFX2-209	ENST00000587700	MIER1	Q8N108	512 aa		13.59	□□□□□ -0.23
RFX2-209	ENST00000587700	PRDM2	Q13029	1718 aa		13.58	□□□□□ -0.24
RFX2-209	ENST00000587700	PODXL2	Q9NZ53	605 aa		13.58	□□□□□ -0.24
RFX2-209	ENST00000587700	KLHL34	Q8N239	644 aa		13.57	□□□□□ -0.24
RFX2-209	ENST00000587700	RAD54L2	Q9Y4B4	1467 aa		13.54	□□□□□ -0.24
RFX2-209	ENST00000587700	FOXD4L1	Q9NU39	408 aa		13.54	□□□□□ -0.24
RFX2-209	ENST00000587700	ARHGAP35	Q9NRY4	1499 aa		13.53	□□□□□ -0.24
RFX2-209	ENST00000587700	CARMIL1	Q5VZK9	1371 aa		13.53	□□□□□ -0.24
RFX2-209	ENST00000587700	YTHDC1	Q96MU7	727 aa	Known RBP	13.51	□□□□□ -0.25
RFX2-209	ENST00000587700	DHX57	Q6P158	1386 aa	Known RBP	13.5	□□□□□ -0.25
RFX2-209	ENST00000587700	VSIG10	Q8N0Z9	540 aa		13.5	□□□□□ -0.25
RFX2-209	ENST00000587700	P3H3	Q8IVL6	736 aa		13.49	□□□□□ -0.25
RFX2-209	ENST00000587700	ERICH6	Q7L0X2	663 aa		13.49	□□□□□ -0.25
RFX2-209	ENST00000587700	POLA1	P09884	1462 aa	Predicted RBP	13.48	□□□□□ -0.25
RFX2-209	ENST00000587700	TOPBP1	Q92547	1522 aa		13.47	□□□□□ -0.25
RFX2-209	ENST00000587700	RRBP1	Q9P2E9	1410 aa	Known RBP	13.47	□□□□□ -0.25
RFX2-209	ENST00000587700	OSCAR	Q8IYS5	282 aa		13.44	□□□□□ -0.26
RFX2-209	ENST00000587700	DNMBP	Q6XZF7	1577 aa		13.44	□□□□□ -0.26
RFX2-209	ENST00000587700	LAMC3	Q9Y6N6	1575 aa		13.44	□□□□□ -0.26
RFX2-209	ENST00000587700	RIMBP3C	A6NJZ7	1639 aa		13.44	□□□□□ -0.26
RFX2-209	ENST00000587700	RIMBP3B	A6NNM3	1639 aa		13.44	□□□□□ -0.26
RFX2-209	ENST00000587700	RIMBP3	Q9UFD9	1639 aa		13.44	□□□□□ -0.26
RFX2-209	ENST00000587700	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.44	□□□□□ -0.26
RFX2-209	ENST00000587700	KDM2A	Q9Y2K7	1162 aa		13.43	□□□□□ -0.26
RFX2-209	ENST00000587700	RNF216	Q9NWF9	866 aa	Predicted RBP	13.43	□□□□□ -0.26
RFX2-209	ENST00000587700	ITGAE	P38570	1179 aa		13.42	□□□□□ -0.26
RFX2-209	ENST00000587700	URB2	Q14146	1524 aa	Known RBP	13.42	□□□□□ -0.26
RFX2-209	ENST00000587700	TMEM132A	Q24JP5	1023 aa		13.42	□□□□□ -0.26
RFX2-209	ENST00000587700	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.41	□□□□□ -0.26
RFX2-209	ENST00000587700	TDRD9	Q8NDG6	1382 aa	Known RBP	13.41	□□□□□ -0.26
RFX2-209	ENST00000587700	ABCA10	Q8WWZ4	1543 aa		13.4	□□□□□ -0.26
RFX2-209	ENST00000587700	CCNB3	Q8WWL7	1395 aa		13.36	□□□□□ -0.27
RFX2-209	ENST00000587700	FHOD3	Q2V2M9	1422 aa		13.36	□□□□□ -0.27
RFX2-209	ENST00000587700	MAP3K1	Q13233	1512 aa		13.35	□□□□□ -0.27
RFX2-209	ENST00000587700	PDS5B	Q9NTI5	1447 aa		13.33	□□□□□ -0.28
RFX2-209	ENST00000587700	WDR62	O43379	1518 aa		13.33	□□□□□ -0.28
RFX2-209	ENST00000587700	FBLN2	P98095	1184 aa		13.31	□□□□□ -0.28
RFX2-209	ENST00000587700	TIAM1	Q13009	1591 aa		13.31	□□□□□ -0.28
RFX2-209	ENST00000587700	KIF21A	Q7Z4S6	1674 aa		13.3	□□□□□ -0.28
RFX2-209	ENST00000587700	PHLDB1	Q86UU1	1377 aa		13.29	□□□□□ -0.28
RFX2-209	ENST00000587700	ILDR1	Q86SU0	546 aa	Predicted RBP	13.29	□□□□□ -0.28
RFX2-209	ENST00000587700	LRRC9	Q6ZRR7	1453 aa		13.29	□□□□□ -0.28
RFX2-209	ENST00000587700	PCF11	O94913	1555 aa	Known RBP	13.29	□□□□□ -0.28
RFX2-209	ENST00000587700	C14orf37	Q86TY3	774 aa		13.28	□□□□□ -0.28
RFX2-209	ENST00000587700	GAPVD1	Q14C86	1478 aa		13.28	□□□□□ -0.28
RFX2-209	ENST00000587700	ARHGEF11	O15085	1522 aa		13.28	□□□□□ -0.28
RFX2-209	ENST00000587700	MRC2	Q9UBG0	1479 aa		13.28	□□□□□ -0.28
RFX2-209	ENST00000587700	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.27	□□□□□ -0.29
RFX2-209	ENST00000587700	FHAD1	B1AJZ9	1412 aa		13.27	□□□□□ -0.29
RFX2-209	ENST00000587700	FAM50A	Q14320	339 aa	Known RBP	13.27	□□□□□ -0.29
RFX2-209	ENST00000587700	WDR97	A6NE52	1622 aa		13.26	□□□□□ -0.29
RFX2-209	ENST00000587700	CUL7	Q14999	1698 aa		13.25	□□□□□ -0.29
RFX2-209	ENST00000587700	MAPKBP1	O60336	1514 aa		13.25	□□□□□ -0.29
RFX2-209	ENST00000587700	ABCA5	Q8WWZ7	1642 aa		13.24	□□□□□ -0.29
RFX2-209	ENST00000587700	NPM2	Q86SE8	214 aa	Known RBP	13.24	□□□□□ -0.29
RFX2-209	ENST00000587700	RAB3GAP2	Q9H2M9	1393 aa		13.24	□□□□□ -0.29
RFX2-209	ENST00000587700	AQR	O60306	1485 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
RFX2-209	ENST00000587700	SETD5	Q9C0A6	1442 aa		13.21	□□□□□ -0.29
RFX2-209	ENST00000587700	CTTNBP2	Q8WZ74	1663 aa		13.2	□□□□□ -0.3
RFX2-209	ENST00000587700	CASKIN1	Q8WXD9	1431 aa		13.19	□□□□□ -0.3
RFX2-209	ENST00000587700	TARBP1	Q13395	1621 aa	Known RBP	13.19	□□□□□ -0.3
RFX2-209	ENST00000587700	EFCAB5	A4FU69	1503 aa		13.19	□□□□□ -0.3
RFX2-209	ENST00000587700	HOXD11	P31277	338 aa	Predicted RBP	13.19	□□□□□ -0.3
RFX2-209	ENST00000587700	FYCO1	Q9BQS8	1478 aa		13.18	□□□□□ -0.3
RFX2-209	ENST00000587700	CFAP43	Q8NDM7	1665 aa		13.17	□□□□□ -0.3
RFX2-209	ENST00000587700	DMRT2	Q9Y5R5	561 aa		13.16	□□□□□ -0.3
RFX2-209	ENST00000587700	SNAPC4	Q5SXM2	1469 aa		13.16	□□□□□ -0.3
RFX2-209	ENST00000587700	TRH	P20396	242 aa	Predicted RBP	13.16	□□□□□ -0.3
RFX2-209	ENST00000587700	FMN1	Q68DA7	1419 aa		13.16	□□□□□ -0.3
RFX2-209	ENST00000587700	ARID3C	A6NKF2	412 aa		13.15	□□□□□ -0.3
RFX2-209	ENST00000587700	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
RFX2-209	ENST00000587700	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.14	□□□□□ -0.31
RFX2-209	ENST00000587700	MTUS2	Q5JR59	1369 aa		13.13	□□□□□ -0.31
RFX2-209	ENST00000587700	SAMD9	Q5K651	1589 aa		13.12	□□□□□ -0.31
RFX2-209	ENST00000587700	TSHZ2	Q9NRE2	1034 aa		13.11	□□□□□ -0.31
RFX2-209	ENST00000587700	SLC4A2	P04920	1241 aa		13.1	□□□□□ -0.31
RFX2-209	ENST00000587700	SIN3A	Q96ST3	1273 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms