RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 CC2D2AQ9P2K1 1620 aa20.26■□□□□ 0.83
SMG6-215ENST00000574501 CCER2I3L3R5 266 aa20.25■□□□□ 0.83
SMG6-215ENST00000574501 CDK11AQ9UQ88 783 aaPredicted RBP20.23■□□□□ 0.83
SMG6-215ENST00000574501 PEG3Q9GZU2 1588 aa20.21■□□□□ 0.83
SMG6-215ENST00000574501 DNAJC5BQ9UF47 199 aa20.19■□□□□ 0.82
SMG6-215ENST00000574501 NCAPD3P42695 1498 aa20.15■□□□□ 0.82
SMG6-215ENST00000574501 PRKCSHP14314 528 aaPredicted RBP20.15■□□□□ 0.82
SMG6-215ENST00000574501 PRXQ9BXM0 1461 aa20.15■□□□□ 0.82
SMG6-215ENST00000574501 SETD5Q9C0A6 1442 aa20.14■□□□□ 0.81
SMG6-215ENST00000574501 DEKP35659 375 aaKnown RBP20.13■□□□□ 0.81
SMG6-215ENST00000574501 ERICH3Q5RHP9 1530 aa20.13■□□□□ 0.81
SMG6-215ENST00000574501 HNRNPUQ00839 825 aaKnown RBP eCLIP20.11■□□□□ 0.81
SMG6-215ENST00000574501 TOP2BQ02880 1626 aa20.08■□□□□ 0.8
SMG6-215ENST00000574501 FAM50AQ14320 339 aaKnown RBP20.06■□□□□ 0.8
SMG6-215ENST00000574501 ARHGAP35Q9NRY4 1499 aa20.05■□□□□ 0.8
SMG6-215ENST00000574501 HMGXB3Q12766 1538 aa20.04■□□□□ 0.8
SMG6-215ENST00000574501 MYT1LQ9UL68 1186 aa20.02■□□□□ 0.8
SMG6-215ENST00000574501 TIMELESSQ9UNS1 1208 aa20.01■□□□□ 0.79
SMG6-215ENST00000574501 NBR1Q14596 966 aa19.99■□□□□ 0.79
SMG6-215ENST00000574501 PHLDB1Q86UU1 1377 aa19.97■□□□□ 0.79
SMG6-215ENST00000574501 PPP4R2Q9NY27 417 aa19.97■□□□□ 0.79
SMG6-215ENST00000574501 B4GALNT3Q6L9W6 998 aa19.95■□□□□ 0.78
SMG6-215ENST00000574501 BIVM-ERCC5R4GMW8 1640 aa19.94■□□□□ 0.78
SMG6-215ENST00000574501 TIAM1Q13009 1591 aa19.92■□□□□ 0.78
SMG6-215ENST00000574501 TONSLQ96HA7 1378 aa19.91■□□□□ 0.78
SMG6-215ENST00000574501 PAK3O75914 559 aaPredicted RBP19.91■□□□□ 0.78
SMG6-215ENST00000574501 NOP58Q9Y2X3 529 aaKnown RBP19.9■□□□□ 0.78
SMG6-215ENST00000574501 KIF27Q86VH2 1401 aa19.89■□□□□ 0.77
SMG6-215ENST00000574501 ERICH6BQ5W0A0 696 aa19.88■□□□□ 0.77
SMG6-215ENST00000574501 ANO8Q9HCE9 1232 aaPredicted RBP19.88■□□□□ 0.77
SMG6-215ENST00000574501 LRRC9Q6ZRR7 1453 aa19.88■□□□□ 0.77
SMG6-215ENST00000574501 ATP1B4Q9UN42 357 aaPredicted RBP19.85■□□□□ 0.77
SMG6-215ENST00000574501 CCDC184Q52MB2 194 aa19.84■□□□□ 0.77
SMG6-215ENST00000574501 CUX1P39880 1505 aa19.8■□□□□ 0.76
SMG6-215ENST00000574501 MAP3K1Q13233 1512 aa19.8■□□□□ 0.76
SMG6-215ENST00000574501 FAM9BQ8IZU0 186 aa19.79■□□□□ 0.76
SMG6-215ENST00000574501 P3H3Q8IVL6 736 aa19.78■□□□□ 0.76
SMG6-215ENST00000574501 WASHC2AQ641Q2 1341 aa19.78■□□□□ 0.76
SMG6-215ENST00000574501 SALL2Q9Y467 1007 aaPredicted RBP19.74■□□□□ 0.75
SMG6-215ENST00000574501 HSPA5P11021 654 aaKnown RBP19.73■□□□□ 0.75
SMG6-215ENST00000574501 FHAD1B1AJZ9 1412 aa19.71■□□□□ 0.75
SMG6-215ENST00000574501 RTL5Q5HYW3 569 aaPredicted RBP19.7■□□□□ 0.74
SMG6-215ENST00000574501 MRS2Q9HD23 443 aa19.68■□□□□ 0.74
SMG6-215ENST00000574501 CCDC18Q5T9S5 1454 aa19.68■□□□□ 0.74
SMG6-215ENST00000574501 IL27Q8NEV9 243 aa19.67■□□□□ 0.74
SMG6-215ENST00000574501 IPO9Q96P70 1041 aaKnown RBP19.67■□□□□ 0.74
SMG6-215ENST00000574501 ANP32AP39687 249 aaKnown RBP19.67■□□□□ 0.74
SMG6-215ENST00000574501 ZBED9Q6R2W3 1325 aa19.67■□□□□ 0.74
SMG6-215ENST00000574501 IGF1RP08069 1367 aa19.66■□□□□ 0.74
SMG6-215ENST00000574501 RTN4Q9NQC3 1192 aaKnown RBP19.65■□□□□ 0.74
SMG6-215ENST00000574501 ZBTB47Q9UFB7 747 aaPredicted RBP19.65■□□□□ 0.74
SMG6-215ENST00000574501 PRKRIP1Q9H875 184 aaPredicted RBP19.64■□□□□ 0.74
SMG6-215ENST00000574501 CADPSQ9ULU8 1353 aa19.64■□□□□ 0.74
SMG6-215ENST00000574501 PCF11O94913 1555 aaKnown RBP19.64■□□□□ 0.74
SMG6-215ENST00000574501 UACAQ9BZF9 1416 aa19.64■□□□□ 0.73
SMG6-215ENST00000574501 KDM5BQ9UGL1 1544 aa19.63■□□□□ 0.73
SMG6-215ENST00000574501 CFAP43Q8NDM7 1665 aa19.63■□□□□ 0.73
SMG6-215ENST00000574501 CCDC136Q96JN2 1154 aa19.63■□□□□ 0.73
SMG6-215ENST00000574501 CNTLNQ9NXG0 1405 aa19.62■□□□□ 0.73
SMG6-215ENST00000574501 CFTRP13569 1480 aa19.61■□□□□ 0.73
SMG6-215ENST00000574501 C11orf95C9JLR9 678 aaPredicted RBP19.61■□□□□ 0.73
SMG6-215ENST00000574501 EIF4G2P78344 907 aaKnown RBP eCLIP19.6■□□□□ 0.73
SMG6-215ENST00000574501 CARMIL1Q5VZK9 1371 aa19.6■□□□□ 0.73
SMG6-215ENST00000574501 PTPRKQ15262 1439 aa19.6■□□□□ 0.73
SMG6-215ENST00000574501 AKNAQ7Z591 1439 aa19.59■□□□□ 0.73
SMG6-215ENST00000574501 AQRO60306 1485 aaKnown RBP eCLIP19.59■□□□□ 0.73
SMG6-215ENST00000574501 NESP48681 1621 aa19.59■□□□□ 0.73
SMG6-215ENST00000574501 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.58■□□□□ 0.73
SMG6-215ENST00000574501 NCOA2Q15596 1464 aa19.56■□□□□ 0.72
SMG6-215ENST00000574501 FHOD3Q2V2M9 1422 aa19.56■□□□□ 0.72
SMG6-215ENST00000574501 FGD6Q6ZV73 1430 aa19.56■□□□□ 0.72
SMG6-215ENST00000574501 HFM1A2PYH4 1435 aa19.56■□□□□ 0.72
SMG6-215ENST00000574501 SENP3-EIF4A1A0A087X0R7 540 aa19.55■□□□□ 0.72
SMG6-215ENST00000574501 CNGB1Q14028 1251 aaPredicted RBP19.54■□□□□ 0.72
SMG6-215ENST00000574501 PTPN23Q9H3S7 1636 aa19.54■□□□□ 0.72
SMG6-215ENST00000574501 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.52■□□□□ 0.72
SMG6-215ENST00000574501 NPM2Q86SE8 214 aaKnown RBP19.52■□□□□ 0.71
SMG6-215ENST00000574501 NAIPQ13075 1403 aa19.51■□□□□ 0.71
SMG6-215ENST00000574501 CCDC7Q96M83 1385 aa19.51■□□□□ 0.71
SMG6-215ENST00000574501 LAMC3Q9Y6N6 1575 aa19.49■□□□□ 0.71
SMG6-215ENST00000574501 LAS1LQ9Y4W2 734 aaKnown RBP19.49■□□□□ 0.71
SMG6-215ENST00000574501 SMG6Q86US8 1419 aaKnown RBP19.47■□□□□ 0.71
SMG6-215ENST00000574501 NUDCQ9Y266 331 aa19.47■□□□□ 0.71
SMG6-215ENST00000574501 FYCO1Q9BQS8 1478 aa19.47■□□□□ 0.71
SMG6-215ENST00000574501 RRP7BPQ9NSQ0 103 aa19.46■□□□□ 0.71
SMG6-215ENST00000574501 NCOA1Q15788 1441 aa19.46■□□□□ 0.71
SMG6-215ENST00000574501 NEFMP07197 916 aa19.45■□□□□ 0.7
SMG6-215ENST00000574501 L3MBTL2Q969R5 705 aa19.45■□□□□ 0.7
SMG6-215ENST00000574501 FMN1Q68DA7 1419 aa19.45■□□□□ 0.7
SMG6-215ENST00000574501 CHIC2Q9UKJ5 165 aa19.44■□□□□ 0.7
SMG6-215ENST00000574501 CASKIN1Q8WXD9 1431 aa19.44■□□□□ 0.7
SMG6-215ENST00000574501 MTUS2Q5JR59 1369 aa19.44■□□□□ 0.7
SMG6-215ENST00000574501 FGD5Q6ZNL6 1462 aa19.42■□□□□ 0.7
SMG6-215ENST00000574501 RNF123Q5XPI4 1314 aa19.42■□□□□ 0.7
SMG6-215ENST00000574501 FOXD1Q16676 465 aa19.42■□□□□ 0.7
SMG6-215ENST00000574501 PDS5BQ9NTI5 1447 aa19.41■□□□□ 0.7
SMG6-215ENST00000574501 KIF7Q2M1P5 1343 aa19.41■□□□□ 0.7
SMG6-215ENST00000574501 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
SMG6-215ENST00000574501 DENND4BO75064 1496 aaPredicted RBP19.39■□□□□ 0.69
SMG6-215ENST00000574501 PRDM2Q13029 1718 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms