RNA–Protein interactions for RNA: ENST00000571252.2

PCDHGA4-201, Transcript of protocadherin gamma subfamily A, 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA4, Length 4,778 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4-201ENST00000571252 FAM9BQ8IZU0 186 aa15.27■□□□□ 0.03
PCDHGA4-201ENST00000571252 SUPT16HQ9Y5B9 1047 aaKnown RBP15.26■□□□□ 0.03
PCDHGA4-201ENST00000571252 CARMIL1Q5VZK9 1371 aa15.26■□□□□ 0.03
PCDHGA4-201ENST00000571252 TOP2BQ02880 1626 aa15.26■□□□□ 0.03
PCDHGA4-201ENST00000571252 ANP32AP39687 249 aaKnown RBP15.25■□□□□ 0.03
PCDHGA4-201ENST00000571252 CCNB3Q8WWL7 1395 aa15.22■□□□□ 0.03
PCDHGA4-201ENST00000571252 IRX6P78412 446 aaPredicted RBP15.22■□□□□ 0.03
PCDHGA4-201ENST00000571252 CADPSQ9ULU8 1353 aa15.22■□□□□ 0.03
PCDHGA4-201ENST00000571252 CUX1P39880 1505 aa15.21■□□□□ 0.03
PCDHGA4-201ENST00000571252 ANP32EQ9BTT0 268 aa15.21■□□□□ 0.02
PCDHGA4-201ENST00000571252 PRXQ9BXM0 1461 aa15.2■□□□□ 0.02
PCDHGA4-201ENST00000571252 CHIC2Q9UKJ5 165 aa15.19■□□□□ 0.02
PCDHGA4-201ENST00000571252 ARAP1Q96P48 1450 aa15.19■□□□□ 0.02
PCDHGA4-201ENST00000571252 CFTRP13569 1480 aa15.18■□□□□ 0.02
PCDHGA4-201ENST00000571252 MRS2Q9HD23 443 aa15.16■□□□□ 0.02
PCDHGA4-201ENST00000571252 IGF1RP08069 1367 aa15.16■□□□□ 0.02
PCDHGA4-201ENST00000571252 HMGXB3Q12766 1538 aa15.15■□□□□ 0.02
PCDHGA4-201ENST00000571252 SIN3AQ96ST3 1273 aa15.15■□□□□ 0.02
PCDHGA4-201ENST00000571252 MTUS2Q5JR59 1369 aa15.15■□□□□ 0.02
PCDHGA4-201ENST00000571252 NPM2Q86SE8 214 aaKnown RBP15.15■□□□□ 0.02
PCDHGA4-201ENST00000571252 DHX57Q6P158 1386 aaKnown RBP15.15■□□□□ 0.02
PCDHGA4-201ENST00000571252 ERICH3Q5RHP9 1530 aa15.13■□□□□ 0.01
PCDHGA4-201ENST00000571252 ZNF777Q9ULD5 760 aaPredicted RBP15.12■□□□□ 0.01
PCDHGA4-201ENST00000571252 CCDC136Q96JN2 1154 aa15.11■□□□□ 0.01
PCDHGA4-201ENST00000571252 EIF4G2P78344 907 aaKnown RBP eCLIP15.11■□□□□ 0.01
PCDHGA4-201ENST00000571252 FGD5Q6ZNL6 1462 aa15.1■□□□□ 0.01
PCDHGA4-201ENST00000571252 ARHGAP35Q9NRY4 1499 aa15.09■□□□□ 0.01
PCDHGA4-201ENST00000571252 RAB3GAP2Q9H2M9 1393 aa15.08■□□□□ 0
PCDHGA4-201ENST00000571252 NBR1Q14596 966 aa15.07■□□□□ 0
PCDHGA4-201ENST00000571252 TMC1Q8TDI8 760 aa15.07■□□□□ 0
PCDHGA4-201ENST00000571252 RRP7BPQ9NSQ0 103 aa15.07■□□□□ 0
PCDHGA4-201ENST00000571252 FANCD2Q9BXW9 1451 aa15.06■□□□□ 0
PCDHGA4-201ENST00000571252 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
PCDHGA4-201ENST00000571252 FHAD1B1AJZ9 1412 aa15.06■□□□□ 0
PCDHGA4-201ENST00000571252 SALL2Q9Y467 1007 aaPredicted RBP15.05■□□□□ -0
PCDHGA4-201ENST00000571252 FHOD3Q2V2M9 1422 aa15.05■□□□□ -0
PCDHGA4-201ENST00000571252 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
PCDHGA4-201ENST00000571252 RAD54L2Q9Y4B4 1467 aa15.04■□□□□ -0
PCDHGA4-201ENST00000571252 ZBTB47Q9UFB7 747 aaPredicted RBP15.03■□□□□ -0
PCDHGA4-201ENST00000571252 SETD5Q9C0A6 1442 aa15.01□□□□□ -0.01
PCDHGA4-201ENST00000571252 TIMELESSQ9UNS1 1208 aa14.98□□□□□ -0.01
PCDHGA4-201ENST00000571252 RRBP1Q9P2E9 1410 aaKnown RBP14.98□□□□□ -0.01
PCDHGA4-201ENST00000571252 TSHZ2Q9NRE2 1034 aa14.98□□□□□ -0.01
PCDHGA4-201ENST00000571252 PHLDB1Q86UU1 1377 aa14.97□□□□□ -0.01
PCDHGA4-201ENST00000571252 CANXP27824 592 aaKnown RBP14.97□□□□□ -0.01
PCDHGA4-201ENST00000571252 NESP48681 1621 aa14.96□□□□□ -0.01
PCDHGA4-201ENST00000571252 CCER2I3L3R5 266 aa14.96□□□□□ -0.01
PCDHGA4-201ENST00000571252 RBM19Q9Y4C8 960 aaKnown RBP14.96□□□□□ -0.02
PCDHGA4-201ENST00000571252 CC2D2AQ9P2K1 1620 aa14.95□□□□□ -0.02
PCDHGA4-201ENST00000571252 PPP4R2Q9NY27 417 aa14.94□□□□□ -0.02
PCDHGA4-201ENST00000571252 KDM2AQ9Y2K7 1162 aa14.92□□□□□ -0.02
PCDHGA4-201ENST00000571252 NPM1P06748 294 aaKnown RBP eCLIP14.92□□□□□ -0.02
PCDHGA4-201ENST00000571252 LRRC9Q6ZRR7 1453 aa14.92□□□□□ -0.02
PCDHGA4-201ENST00000571252 ESF1Q9H501 851 aaKnown RBP14.91□□□□□ -0.02
PCDHGA4-201ENST00000571252 SENP3-EIF4A1A0A087X0R7 540 aa14.91□□□□□ -0.02
PCDHGA4-201ENST00000571252 KCNH8Q96L42 1107 aa14.88□□□□□ -0.03
PCDHGA4-201ENST00000571252 B4GALNT3Q6L9W6 998 aa14.88□□□□□ -0.03
PCDHGA4-201ENST00000571252 FMN1Q68DA7 1419 aa14.87□□□□□ -0.03
PCDHGA4-201ENST00000571252 DNAJC5BQ9UF47 199 aa14.87□□□□□ -0.03
PCDHGA4-201ENST00000571252 POLA1P09884 1462 aaPredicted RBP14.87□□□□□ -0.03
PCDHGA4-201ENST00000571252 ERCC6Q03468 1493 aa14.87□□□□□ -0.03
PCDHGA4-201ENST00000571252 TIAM1Q13009 1591 aa14.86□□□□□ -0.03
PCDHGA4-201ENST00000571252 PDS5BQ9NTI5 1447 aa14.85□□□□□ -0.03
PCDHGA4-201ENST00000571252 TOPBP1Q92547 1522 aa14.85□□□□□ -0.03
PCDHGA4-201ENST00000571252 TSPY4P0CV99 314 aa14.85□□□□□ -0.03
PCDHGA4-201ENST00000571252 TSPY10P0CW01 314 aa14.85□□□□□ -0.03
PCDHGA4-201ENST00000571252 PPP1R15AO75807 674 aaPredicted RBP14.84□□□□□ -0.03
PCDHGA4-201ENST00000571252 EIF5BO60841 1220 aaKnown RBP14.82□□□□□ -0.04
PCDHGA4-201ENST00000571252 BCL11AQ9H165 835 aa14.82□□□□□ -0.04
PCDHGA4-201ENST00000571252 NEFMP07197 916 aa14.81□□□□□ -0.04
PCDHGA4-201ENST00000571252 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.8□□□□□ -0.04
PCDHGA4-201ENST00000571252 HSPA5P11021 654 aaKnown RBP14.79□□□□□ -0.04
PCDHGA4-201ENST00000571252 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.79□□□□□ -0.04
PCDHGA4-201ENST00000571252 GAPVD1Q14C86 1478 aa14.79□□□□□ -0.04
PCDHGA4-201ENST00000571252 WDR43Q15061 677 aaKnown RBP eCLIP14.78□□□□□ -0.04
PCDHGA4-201ENST00000571252 NOP58Q9Y2X3 529 aaKnown RBP14.78□□□□□ -0.04
PCDHGA4-201ENST00000571252 DNMBPQ6XZF7 1577 aa14.78□□□□□ -0.04
PCDHGA4-201ENST00000571252 CASKIN1Q8WXD9 1431 aa14.77□□□□□ -0.04
PCDHGA4-201ENST00000571252 PCF11O94913 1555 aaKnown RBP14.77□□□□□ -0.05
PCDHGA4-201ENST00000571252 SLC24A1O60721 1099 aa14.76□□□□□ -0.05
PCDHGA4-201ENST00000571252 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
PCDHGA4-201ENST00000571252 FOXD1Q16676 465 aa14.76□□□□□ -0.05
PCDHGA4-201ENST00000571252 STAG3Q9UJ98 1225 aa14.76□□□□□ -0.05
PCDHGA4-201ENST00000571252 FGD6Q6ZV73 1430 aa14.76□□□□□ -0.05
PCDHGA4-201ENST00000571252 UPF2Q9HAU5 1272 aaKnown RBP14.75□□□□□ -0.05
PCDHGA4-201ENST00000571252 CHMP7Q8WUX9 453 aaPredicted RBP14.75□□□□□ -0.05
PCDHGA4-201ENST00000571252 CARD11Q9BXL7 1154 aa14.74□□□□□ -0.05
PCDHGA4-201ENST00000571252 FYCO1Q9BQS8 1478 aa14.74□□□□□ -0.05
PCDHGA4-201ENST00000571252 ERICH6BQ5W0A0 696 aa14.73□□□□□ -0.05
PCDHGA4-201ENST00000571252 CFDP1Q9UEE9 299 aaPredicted RBP14.73□□□□□ -0.05
PCDHGA4-201ENST00000571252 CHGAP10645 457 aaKnown RBP14.72□□□□□ -0.05
PCDHGA4-201ENST00000571252 RGL3Q3MIN7 710 aa14.72□□□□□ -0.05
PCDHGA4-201ENST00000571252 CCDC18Q5T9S5 1454 aa14.71□□□□□ -0.05
PCDHGA4-201ENST00000571252 DDRGK1Q96HY6 314 aa14.7□□□□□ -0.06
PCDHGA4-201ENST00000571252 MAP3K1Q13233 1512 aa14.7□□□□□ -0.06
PCDHGA4-201ENST00000571252 AQRO60306 1485 aaKnown RBP eCLIP14.7□□□□□ -0.06
PCDHGA4-201ENST00000571252 PLPPR3Q6T4P5 718 aa14.69□□□□□ -0.06
PCDHGA4-201ENST00000571252 EFCAB5A4FU69 1503 aa14.69□□□□□ -0.06
PCDHGA4-201ENST00000571252 URB2Q14146 1524 aaKnown RBP14.68□□□□□ -0.06
PCDHGA4-201ENST00000571252 DEKP35659 375 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms