RNA–Protein interactions for RNA: ENST00000571252.2

PCDHGA4-201, Transcript of protocadherin gamma subfamily A, 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA4, Length 4,778 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4-201ENST00000571252 NISCHQ9Y2I1 1504 aa20.98■□□□□ 0.95
PCDHGA4-201ENST00000571252 DCAF8L2P0C7V8 631 aa18.9■□□□□ 0.62
PCDHGA4-201ENST00000571252 SUPT5HO00267 1087 aaKnown RBP18.68■□□□□ 0.58
PCDHGA4-201ENST00000571252 SHROOM4Q9ULL8 1493 aa18.63■□□□□ 0.57
PCDHGA4-201ENST00000571252 PCGF6Q9BYE7 350 aa17.84■□□□□ 0.45
PCDHGA4-201ENST00000571252 EHMT2Q96KQ7 1210 aa17.7■□□□□ 0.42
PCDHGA4-201ENST00000571252 ZCCHC6Q5VYS8 1495 aaKnown RBP17.64■□□□□ 0.41
PCDHGA4-201ENST00000571252 CCDC180Q9P1Z9 1646 aa17.53■□□□□ 0.4
PCDHGA4-201ENST00000571252 FAM9AQ8IZU1 332 aaPredicted RBP17.48■□□□□ 0.39
PCDHGA4-201ENST00000571252 CHIC1Q5VXU3 224 aa17.45■□□□□ 0.38
PCDHGA4-201ENST00000571252 HRCP23327 699 aa17.4■□□□□ 0.38
PCDHGA4-201ENST00000571252 ZEB1P37275 1124 aaPredicted RBP17.32■□□□□ 0.36
PCDHGA4-201ENST00000571252 TRIM41Q8WV44 630 aa17.27■□□□□ 0.35
PCDHGA4-201ENST00000571252 TTBK1Q5TCY1 1321 aaPredicted RBP17.16■□□□□ 0.34
PCDHGA4-201ENST00000571252 LOC105371045A0A1W2PR82 267 aa17.15■□□□□ 0.34
PCDHGA4-201ENST00000571252 TRIM26Q12899 539 aaPredicted RBP17.15■□□□□ 0.34
PCDHGA4-201ENST00000571252 CCER1Q8TC90 406 aaPredicted RBP17.1■□□□□ 0.33
PCDHGA4-201ENST00000571252 PELP1Q8IZL8 1130 aaKnown RBP17.09■□□□□ 0.33
PCDHGA4-201ENST00000571252 PPARGC1BQ86YN6 1023 aaKnown RBP17.07■□□□□ 0.32
PCDHGA4-201ENST00000571252 MYO15BQ96JP2 1530 aa17.07■□□□□ 0.32
PCDHGA4-201ENST00000571252 CENPBP07199 599 aaPredicted RBP17.06■□□□□ 0.32
PCDHGA4-201ENST00000571252 APLP2Q06481 763 aa17.06■□□□□ 0.32
PCDHGA4-201ENST00000571252 ABCC9O60706 1549 aa16.99■□□□□ 0.31
PCDHGA4-201ENST00000571252 DCAF1Q9Y4B6 1507 aa16.92■□□□□ 0.3
PCDHGA4-201ENST00000571252 SCRIBQ14160 1630 aa16.91■□□□□ 0.3
PCDHGA4-201ENST00000571252 UBTFP17480 764 aaKnown RBP16.8■□□□□ 0.28
PCDHGA4-201ENST00000571252 RANGAP1P46060 587 aaPredicted RBP16.75■□□□□ 0.27
PCDHGA4-201ENST00000571252 YTHDC1Q96MU7 727 aaKnown RBP16.73■□□□□ 0.27
PCDHGA4-201ENST00000571252 RSF1Q96T23 1441 aaPredicted RBP16.71■□□□□ 0.27
PCDHGA4-201ENST00000571252 MYT1Q01538 1121 aa16.6■□□□□ 0.25
PCDHGA4-201ENST00000571252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.58■□□□□ 0.25
PCDHGA4-201ENST00000571252 CECR2Q9BXF3 1484 aa16.51■□□□□ 0.23
PCDHGA4-201ENST00000571252 PABPN1Q86U42 306 aaKnown RBP eCLIP16.49■□□□□ 0.23
PCDHGA4-201ENST00000571252 DIEXFQ68CQ4 756 aaKnown RBP16.48■□□□□ 0.23
PCDHGA4-201ENST00000571252 NACADO15069 1562 aa16.46■□□□□ 0.23
PCDHGA4-201ENST00000571252 RB1CC1Q8TDY2 1594 aa16.46■□□□□ 0.23
PCDHGA4-201ENST00000571252 HNRNPUL2Q1KMD3 747 aaKnown RBP16.43■□□□□ 0.22
PCDHGA4-201ENST00000571252 ATP1B4Q9UN42 357 aaPredicted RBP16.37■□□□□ 0.21
PCDHGA4-201ENST00000571252 MROH2BQ7Z745 1585 aa16.37■□□□□ 0.21
PCDHGA4-201ENST00000571252 NEFLP07196 543 aa16.33■□□□□ 0.2
PCDHGA4-201ENST00000571252 GTF3C3Q9Y5Q9 886 aa16.31■□□□□ 0.2
PCDHGA4-201ENST00000571252 ERICH6Q7L0X2 663 aa16.3■□□□□ 0.2
PCDHGA4-201ENST00000571252 ITGAEP38570 1179 aa16.24■□□□□ 0.19
PCDHGA4-201ENST00000571252 WIZO95785 1651 aa16.23■□□□□ 0.19
PCDHGA4-201ENST00000571252 ACIN1Q9UKV3 1341 aaKnown RBP16.22■□□□□ 0.19
PCDHGA4-201ENST00000571252 BAZ1AQ9NRL2 1556 aaPredicted RBP16.16■□□□□ 0.18
PCDHGA4-201ENST00000571252 ZNF316A6NFI3 1004 aaPredicted RBP16.14■□□□□ 0.17
PCDHGA4-201ENST00000571252 CSRNP3Q8WYN3 585 aa16.1■□□□□ 0.17
PCDHGA4-201ENST00000571252 SCAF1Q9H7N4 1312 aaKnown RBP16.05■□□□□ 0.16
PCDHGA4-201ENST00000571252 ABCC8Q09428 1581 aa16.03■□□□□ 0.16
PCDHGA4-201ENST00000571252 CCDC88BA6NC98 1476 aa16.03■□□□□ 0.16
PCDHGA4-201ENST00000571252 NEUROD1Q13562 356 aa16■□□□□ 0.15
PCDHGA4-201ENST00000571252 SOGA1O94964 1423 aa15.97■□□□□ 0.15
PCDHGA4-201ENST00000571252 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
PCDHGA4-201ENST00000571252 CEP162Q5TB80 1403 aa15.92■□□□□ 0.14
PCDHGA4-201ENST00000571252 SMARCA4P51532 1647 aa15.92■□□□□ 0.14
PCDHGA4-201ENST00000571252 WRNQ14191 1432 aaPredicted RBP eCLIP15.87■□□□□ 0.13
PCDHGA4-201ENST00000571252 BCANQ96GW7 911 aa15.86■□□□□ 0.13
PCDHGA4-201ENST00000571252 FAM50AQ14320 339 aaKnown RBP15.84■□□□□ 0.13
PCDHGA4-201ENST00000571252 TNIKQ9UKE5 1360 aa15.82■□□□□ 0.12
PCDHGA4-201ENST00000571252 SMARCA2P51531 1590 aa15.82■□□□□ 0.12
PCDHGA4-201ENST00000571252 MYT1LQ9UL68 1186 aa15.82■□□□□ 0.12
PCDHGA4-201ENST00000571252 RUSC2Q8N2Y8 1516 aa15.81■□□□□ 0.12
PCDHGA4-201ENST00000571252 EEA1Q15075 1411 aa15.79■□□□□ 0.12
PCDHGA4-201ENST00000571252 BAZ1BQ9UIG0 1483 aaKnown RBP15.79■□□□□ 0.12
PCDHGA4-201ENST00000571252 POLR3GLQ9BT43 218 aa15.78■□□□□ 0.12
PCDHGA4-201ENST00000571252 GOLGA3Q08378 1498 aa15.77■□□□□ 0.12
PCDHGA4-201ENST00000571252 CNGB1Q14028 1251 aaPredicted RBP15.74■□□□□ 0.11
PCDHGA4-201ENST00000571252 CLIP1P30622 1438 aa15.72■□□□□ 0.11
PCDHGA4-201ENST00000571252 MIER1Q8N108 512 aa15.72■□□□□ 0.11
PCDHGA4-201ENST00000571252 ANP32CO43423 234 aa15.72■□□□□ 0.11
PCDHGA4-201ENST00000571252 CLSPNQ9HAW4 1339 aa15.66■□□□□ 0.1
PCDHGA4-201ENST00000571252 ATAD2BQ9ULI0 1458 aa15.66■□□□□ 0.1
PCDHGA4-201ENST00000571252 CEP164Q9UPV0 1460 aa15.66■□□□□ 0.1
PCDHGA4-201ENST00000571252 UNC13AQ9UPW8 1703 aa15.63■□□□□ 0.09
PCDHGA4-201ENST00000571252 TRIM52Q96A61 297 aa15.6■□□□□ 0.09
PCDHGA4-201ENST00000571252 BICRAQ9NZM4 1560 aa15.59■□□□□ 0.09
PCDHGA4-201ENST00000571252 EIF4G1Q04637 1599 aaKnown RBP15.58■□□□□ 0.08
PCDHGA4-201ENST00000571252 CDK11AQ9UQ88 783 aaPredicted RBP15.58■□□□□ 0.08
PCDHGA4-201ENST00000571252 FKBP8Q14318 412 aa15.57■□□□□ 0.08
PCDHGA4-201ENST00000571252 P3H3Q8IVL6 736 aa15.55■□□□□ 0.08
PCDHGA4-201ENST00000571252 DDX10Q13206 875 aaKnown RBP15.54■□□□□ 0.08
PCDHGA4-201ENST00000571252 DAXXQ9UER7 740 aaPredicted RBP15.54■□□□□ 0.08
PCDHGA4-201ENST00000571252 RAPGEF2Q9Y4G8 1499 aa15.53■□□□□ 0.08
PCDHGA4-201ENST00000571252 RTL5Q5HYW3 569 aaPredicted RBP15.51■□□□□ 0.07
PCDHGA4-201ENST00000571252 SYNJ1O43426 1573 aa15.5■□□□□ 0.07
PCDHGA4-201ENST00000571252 VPS8Q8N3P4 1428 aa15.49■□□□□ 0.07
PCDHGA4-201ENST00000571252 KIF27Q86VH2 1401 aa15.44■□□□□ 0.06
PCDHGA4-201ENST00000571252 KANK4Q5T7N3 995 aaPredicted RBP15.42■□□□□ 0.06
PCDHGA4-201ENST00000571252 TONSLQ96HA7 1378 aa15.41■□□□□ 0.06
PCDHGA4-201ENST00000571252 ZNF326Q5BKZ1 582 aaKnown RBP15.4■□□□□ 0.06
PCDHGA4-201ENST00000571252 HNRNPUQ00839 825 aaKnown RBP eCLIP15.39■□□□□ 0.05
PCDHGA4-201ENST00000571252 PEG3Q9GZU2 1588 aa15.36■□□□□ 0.05
PCDHGA4-201ENST00000571252 FBLN2P98095 1184 aa15.34■□□□□ 0.05
PCDHGA4-201ENST00000571252 HIRIP3Q9BW71 556 aaPredicted RBP15.34■□□□□ 0.05
PCDHGA4-201ENST00000571252 KIF21BO75037 1637 aa15.33■□□□□ 0.04
PCDHGA4-201ENST00000571252 CUX2O14529 1486 aa15.33■□□□□ 0.04
PCDHGA4-201ENST00000571252 NCAPD3P42695 1498 aa15.29■□□□□ 0.04
PCDHGA4-201ENST00000571252 ARID3CA6NKF2 412 aa15.28■□□□□ 0.04
PCDHGA4-201ENST00000571252 SLC4A1APQ9BWU0 796 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms