RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 SYNJ2O15056 1496 aa17.27■□□□□ 0.36
CDH3-210ENST00000569117 ZBTB22O15209 634 aa17.26■□□□□ 0.35
CDH3-210ENST00000569117 CHD1O14646 1710 aa17.26■□□□□ 0.35
CDH3-210ENST00000569117 FAM9AQ8IZU1 332 aaPredicted RBP17.24■□□□□ 0.35
CDH3-210ENST00000569117 CARMIL1Q5VZK9 1371 aa17.24■□□□□ 0.35
CDH3-210ENST00000569117 CNKSR2Q8WXI2 1034 aa17.23■□□□□ 0.35
CDH3-210ENST00000569117 RAPGEF2Q9Y4G8 1499 aa17.23■□□□□ 0.35
CDH3-210ENST00000569117 GRIN2AQ12879 1464 aa17.22■□□□□ 0.35
CDH3-210ENST00000569117 GOLGA3Q08378 1498 aa17.18■□□□□ 0.34
CDH3-210ENST00000569117 CTTNBP2Q8WZ74 1663 aa17.16■□□□□ 0.34
CDH3-210ENST00000569117 CEP170Q5SW79 1584 aa17.14■□□□□ 0.33
CDH3-210ENST00000569117 NUP160Q12769 1436 aa17.12■□□□□ 0.33
CDH3-210ENST00000569117 CHMP7Q8WUX9 453 aaPredicted RBP17.11■□□□□ 0.33
CDH3-210ENST00000569117 SCAF1Q9H7N4 1312 aaKnown RBP17.1■□□□□ 0.33
CDH3-210ENST00000569117 CLASP1Q7Z460 1538 aa17.06■□□□□ 0.32
CDH3-210ENST00000569117 FBLN2P98095 1184 aa17.06■□□□□ 0.32
CDH3-210ENST00000569117 IQGAP2Q13576 1575 aa17.05■□□□□ 0.32
CDH3-210ENST00000569117 KIAA0586Q9BVV6 1533 aa17.03■□□□□ 0.32
CDH3-210ENST00000569117 SHROOM2Q13796 1616 aa17■□□□□ 0.31
CDH3-210ENST00000569117 TNIKQ9UKE5 1360 aa17■□□□□ 0.31
CDH3-210ENST00000569117 UGGT2Q9NYU1 1516 aa16.96■□□□□ 0.3
CDH3-210ENST00000569117 UBTFP17480 764 aaKnown RBP16.95■□□□□ 0.3
CDH3-210ENST00000569117 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
CDH3-210ENST00000569117 SAMD9Q5K651 1589 aa16.94■□□□□ 0.3
CDH3-210ENST00000569117 OSCARQ8IYS5 282 aa16.93■□□□□ 0.3
CDH3-210ENST00000569117 EFCAB5A4FU69 1503 aa16.92■□□□□ 0.3
CDH3-210ENST00000569117 FOXD4L1Q9NU39 408 aa16.91■□□□□ 0.3
CDH3-210ENST00000569117 KIAA0556O60303 1618 aa16.89■□□□□ 0.29
CDH3-210ENST00000569117 CEP162Q5TB80 1403 aa16.88■□□□□ 0.29
CDH3-210ENST00000569117 DISP1Q96F81 1524 aa16.86■□□□□ 0.29
CDH3-210ENST00000569117 CLIP1P30622 1438 aa16.84■□□□□ 0.29
CDH3-210ENST00000569117 ARHGAP35Q9NRY4 1499 aa16.84■□□□□ 0.29
CDH3-210ENST00000569117 PRG4Q92954 1404 aaPredicted RBP16.83■□□□□ 0.28
CDH3-210ENST00000569117 JPH4Q96JJ6 628 aa16.83■□□□□ 0.28
CDH3-210ENST00000569117 ERCC6L2Q5T890 1561 aa16.82■□□□□ 0.28
CDH3-210ENST00000569117 CARMIL2Q6F5E8 1435 aa16.81■□□□□ 0.28
CDH3-210ENST00000569117 ARHGEF11O15085 1522 aa16.79■□□□□ 0.28
CDH3-210ENST00000569117 ARAP1Q96P48 1450 aa16.78■□□□□ 0.28
CDH3-210ENST00000569117 RIMBP3CA6NJZ7 1639 aa16.76■□□□□ 0.27
CDH3-210ENST00000569117 RIMBP3BA6NNM3 1639 aa16.76■□□□□ 0.27
CDH3-210ENST00000569117 RIMBP3Q9UFD9 1639 aa16.76■□□□□ 0.27
CDH3-210ENST00000569117 FHOD3Q2V2M9 1422 aa16.76■□□□□ 0.27
CDH3-210ENST00000569117 RANGAP1P46060 587 aaPredicted RBP16.74■□□□□ 0.27
CDH3-210ENST00000569117 MAPK8IP2Q13387 824 aaPredicted RBP16.72■□□□□ 0.27
CDH3-210ENST00000569117 MSH5O43196 834 aa16.69■□□□□ 0.26
CDH3-210ENST00000569117 FMN1Q68DA7 1419 aa16.69■□□□□ 0.26
CDH3-210ENST00000569117 PCF11O94913 1555 aaKnown RBP16.68■□□□□ 0.26
CDH3-210ENST00000569117 VPS8Q8N3P4 1428 aa16.67■□□□□ 0.26
CDH3-210ENST00000569117 ABCA8O94911 1581 aa16.67■□□□□ 0.26
CDH3-210ENST00000569117 P3H3Q8IVL6 736 aa16.66■□□□□ 0.26
CDH3-210ENST00000569117 RAPGEF6Q8TEU7 1601 aa16.66■□□□□ 0.26
CDH3-210ENST00000569117 PTPRGP23470 1445 aa16.65■□□□□ 0.26
CDH3-210ENST00000569117 FYCO1Q9BQS8 1478 aa16.64■□□□□ 0.25
CDH3-210ENST00000569117 HECW1Q76N89 1606 aa16.63■□□□□ 0.25
CDH3-210ENST00000569117 RNF216Q9NWF9 866 aaPredicted RBP16.63■□□□□ 0.25
CDH3-210ENST00000569117 ABCC2Q92887 1545 aa16.62■□□□□ 0.25
CDH3-210ENST00000569117 PLB1Q6P1J6 1458 aa16.61■□□□□ 0.25
CDH3-210ENST00000569117 SLC24A1O60721 1099 aa16.61■□□□□ 0.25
CDH3-210ENST00000569117 CASKIN1Q8WXD9 1431 aa16.61■□□□□ 0.25
CDH3-210ENST00000569117 ADCY10Q96PN6 1610 aa16.6■□□□□ 0.25
CDH3-210ENST00000569117 UHRF1BP1LA0JNW5 1464 aa16.6■□□□□ 0.25
CDH3-210ENST00000569117 LRRIQ1Q96JM4 1722 aa16.59■□□□□ 0.25
CDH3-210ENST00000569117 UACAQ9BZF9 1416 aa16.59■□□□□ 0.25
CDH3-210ENST00000569117 NUP153P49790 1475 aaKnown RBP16.57■□□□□ 0.24
CDH3-210ENST00000569117 DNAJC5Q9H3Z4 198 aa16.57■□□□□ 0.24
CDH3-210ENST00000569117 RTN4Q9NQC3 1192 aaKnown RBP16.57■□□□□ 0.24
CDH3-210ENST00000569117 CFAP43Q8NDM7 1665 aa16.56■□□□□ 0.24
CDH3-210ENST00000569117 TTBK1Q5TCY1 1321 aaPredicted RBP16.54■□□□□ 0.24
CDH3-210ENST00000569117 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
CDH3-210ENST00000569117 AMER1Q5JTC6 1135 aaPredicted RBP16.53■□□□□ 0.24
CDH3-210ENST00000569117 ZCCHC11Q5TAX3 1644 aaKnown RBP16.52■□□□□ 0.24
CDH3-210ENST00000569117 EPRSP07814 1512 aaKnown RBP16.52■□□□□ 0.24
CDH3-210ENST00000569117 KDM5BQ9UGL1 1544 aa16.51■□□□□ 0.23
CDH3-210ENST00000569117 TIAM1Q13009 1591 aa16.51■□□□□ 0.23
CDH3-210ENST00000569117 MAP3K1Q13233 1512 aa16.5■□□□□ 0.23
CDH3-210ENST00000569117 CDK13Q14004 1512 aaKnown RBP16.5■□□□□ 0.23
CDH3-210ENST00000569117 CYB5RLQ6IPT4 315 aa16.46■□□□□ 0.23
CDH3-210ENST00000569117 ATP10BO94823 1461 aa16.46■□□□□ 0.23
CDH3-210ENST00000569117 MAPKBP1O60336 1514 aa16.42■□□□□ 0.22
CDH3-210ENST00000569117 EHBP1L1Q8N3D4 1523 aa16.41■□□□□ 0.22
CDH3-210ENST00000569117 MAGI3Q5TCQ9 1506 aa16.4■□□□□ 0.22
CDH3-210ENST00000569117 ATP1B4Q9UN42 357 aaPredicted RBP16.4■□□□□ 0.22
CDH3-210ENST00000569117 LRRC9Q6ZRR7 1453 aa16.38■□□□□ 0.21
CDH3-210ENST00000569117 WDR7Q9Y4E6 1490 aa16.37■□□□□ 0.21
CDH3-210ENST00000569117 ARID3CA6NKF2 412 aa16.36■□□□□ 0.21
CDH3-210ENST00000569117 TROQ12816 1431 aaPredicted RBP16.36■□□□□ 0.21
CDH3-210ENST00000569117 KIF14Q15058 1648 aa16.35■□□□□ 0.21
CDH3-210ENST00000569117 ASXL2Q76L83 1435 aa16.35■□□□□ 0.21
CDH3-210ENST00000569117 APLP2Q06481 763 aa16.34■□□□□ 0.21
CDH3-210ENST00000569117 SUPT6HQ7KZ85 1726 aaKnown RBP16.33■□□□□ 0.21
CDH3-210ENST00000569117 NPM1P06748 294 aaKnown RBP eCLIP16.33■□□□□ 0.2
CDH3-210ENST00000569117 SLC4A2P04920 1241 aa16.32■□□□□ 0.2
CDH3-210ENST00000569117 MTUS2Q5JR59 1369 aa16.32■□□□□ 0.2
CDH3-210ENST00000569117 CDK11AQ9UQ88 783 aaPredicted RBP16.32■□□□□ 0.2
CDH3-210ENST00000569117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
CDH3-210ENST00000569117 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
CDH3-210ENST00000569117 DIP2BQ9P265 1576 aa16.3■□□□□ 0.2
CDH3-210ENST00000569117 HOXD11P31277 338 aaPredicted RBP16.29■□□□□ 0.2
CDH3-210ENST00000569117 ABCA9Q8IUA7 1624 aa16.28■□□□□ 0.2
CDH3-210ENST00000569117 PLEKHD1A6NEE1 506 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms