RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 GOLGA3Q08378 1498 aa27.44■■□□□ 1.98
COMMD4-224ENST00000568877 JPH4Q96JJ6 628 aa27.44■■□□□ 1.98
COMMD4-224ENST00000568877 EHMT2Q96KQ7 1210 aa27.44■■□□□ 1.98
COMMD4-224ENST00000568877 IQGAP2Q13576 1575 aa27.4■■□□□ 1.98
COMMD4-224ENST00000568877 SHROOM2Q13796 1616 aa27.39■■□□□ 1.98
COMMD4-224ENST00000568877 CTTNBP2Q8WZ74 1663 aa27.38■■□□□ 1.97
COMMD4-224ENST00000568877 UBTFP17480 764 aaKnown RBP27.38■■□□□ 1.97
COMMD4-224ENST00000568877 ARHGEF11O15085 1522 aa27.35■■□□□ 1.97
COMMD4-224ENST00000568877 PRG4Q92954 1404 aaPredicted RBP27.33■■□□□ 1.97
COMMD4-224ENST00000568877 RIMBP3CA6NJZ7 1639 aa27.29■■□□□ 1.96
COMMD4-224ENST00000568877 RIMBP3BA6NNM3 1639 aa27.29■■□□□ 1.96
COMMD4-224ENST00000568877 RIMBP3Q9UFD9 1639 aa27.29■■□□□ 1.96
COMMD4-224ENST00000568877 UGGT2Q9NYU1 1516 aa27.28■■□□□ 1.96
COMMD4-224ENST00000568877 ERCC6L2Q5T890 1561 aa27.26■■□□□ 1.96
COMMD4-224ENST00000568877 CARMIL2Q6F5E8 1435 aa27.23■■□□□ 1.95
COMMD4-224ENST00000568877 LOC105371045A0A1W2PR82 267 aa27.2■■□□□ 1.94
COMMD4-224ENST00000568877 DISP1Q96F81 1524 aa27.2■■□□□ 1.94
COMMD4-224ENST00000568877 TNIKQ9UKE5 1360 aa27.19■■□□□ 1.94
COMMD4-224ENST00000568877 RANGAP1P46060 587 aaPredicted RBP27.18■■□□□ 1.94
COMMD4-224ENST00000568877 ARAP1Q96P48 1450 aa27.17■■□□□ 1.94
COMMD4-224ENST00000568877 KIAA0556O60303 1618 aa27.13■■□□□ 1.93
COMMD4-224ENST00000568877 CYB5RLQ6IPT4 315 aa27.12■■□□□ 1.93
COMMD4-224ENST00000568877 SAMD9Q5K651 1589 aa27.09■■□□□ 1.93
COMMD4-224ENST00000568877 P3H3Q8IVL6 736 aa27.08■■□□□ 1.93
COMMD4-224ENST00000568877 PTPRGP23470 1445 aa27.07■■□□□ 1.92
COMMD4-224ENST00000568877 EFCAB5A4FU69 1503 aa27.06■■□□□ 1.92
COMMD4-224ENST00000568877 TTBK1Q5TCY1 1321 aaPredicted RBP27.04■■□□□ 1.92
COMMD4-224ENST00000568877 ARHGAP35Q9NRY4 1499 aa27■■□□□ 1.91
COMMD4-224ENST00000568877 FHOD3Q2V2M9 1422 aa26.98■■□□□ 1.91
COMMD4-224ENST00000568877 CLIP1P30622 1438 aa26.97■■□□□ 1.91
COMMD4-224ENST00000568877 CEP162Q5TB80 1403 aa26.94■■□□□ 1.9
COMMD4-224ENST00000568877 UACAQ9BZF9 1416 aa26.89■■□□□ 1.89
COMMD4-224ENST00000568877 PLB1Q6P1J6 1458 aa26.86■■□□□ 1.89
COMMD4-224ENST00000568877 UHRF1BP1LA0JNW5 1464 aa26.84■■□□□ 1.89
COMMD4-224ENST00000568877 ADCY10Q96PN6 1610 aa26.83■■□□□ 1.88
COMMD4-224ENST00000568877 FMN1Q68DA7 1419 aa26.82■■□□□ 1.88
COMMD4-224ENST00000568877 ABCA8O94911 1581 aa26.82■■□□□ 1.88
COMMD4-224ENST00000568877 ABCC2Q92887 1545 aa26.81■■□□□ 1.88
COMMD4-224ENST00000568877 NPM1P06748 294 aaKnown RBP eCLIP26.76■■□□□ 1.87
COMMD4-224ENST00000568877 RAPGEF6Q8TEU7 1601 aa26.75■■□□□ 1.87
COMMD4-224ENST00000568877 KDM5BQ9UGL1 1544 aa26.7■■□□□ 1.86
COMMD4-224ENST00000568877 NUP153P49790 1475 aaKnown RBP26.68■■□□□ 1.86
COMMD4-224ENST00000568877 ATP1B4Q9UN42 357 aaPredicted RBP26.66■■□□□ 1.86
COMMD4-224ENST00000568877 CASKIN1Q8WXD9 1431 aa26.65■■□□□ 1.86
COMMD4-224ENST00000568877 ARID3CA6NKF2 412 aa26.65■■□□□ 1.86
COMMD4-224ENST00000568877 ATP10BO94823 1461 aa26.63■■□□□ 1.85
COMMD4-224ENST00000568877 ZCCHC11Q5TAX3 1644 aaKnown RBP26.62■■□□□ 1.85
COMMD4-224ENST00000568877 PCF11O94913 1555 aaKnown RBP26.62■■□□□ 1.85
COMMD4-224ENST00000568877 HECW1Q76N89 1606 aa26.61■■□□□ 1.85
COMMD4-224ENST00000568877 FYCO1Q9BQS8 1478 aa26.6■■□□□ 1.85
COMMD4-224ENST00000568877 VPS8Q8N3P4 1428 aa26.59■■□□□ 1.85
COMMD4-224ENST00000568877 MAPKBP1O60336 1514 aa26.59■■□□□ 1.85
COMMD4-224ENST00000568877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.58■■□□□ 1.85
COMMD4-224ENST00000568877 HNRNPUL2Q1KMD3 747 aaKnown RBP26.58■■□□□ 1.85
COMMD4-224ENST00000568877 ASXL2Q76L83 1435 aa26.56■■□□□ 1.84
COMMD4-224ENST00000568877 EPRSP07814 1512 aaKnown RBP26.55■■□□□ 1.84
COMMD4-224ENST00000568877 CDK13Q14004 1512 aaKnown RBP26.52■■□□□ 1.84
COMMD4-224ENST00000568877 CCDC18Q5T9S5 1454 aa26.49■■□□□ 1.83
COMMD4-224ENST00000568877 WDR7Q9Y4E6 1490 aa26.48■■□□□ 1.83
COMMD4-224ENST00000568877 LRRIQ1Q96JM4 1722 aa26.46■■□□□ 1.83
COMMD4-224ENST00000568877 PLEKHD1A6NEE1 506 aa26.46■■□□□ 1.83
COMMD4-224ENST00000568877 CDK11AQ9UQ88 783 aaPredicted RBP26.45■■□□□ 1.82
COMMD4-224ENST00000568877 TRHP20396 242 aaPredicted RBP26.44■■□□□ 1.82
COMMD4-224ENST00000568877 ABCC10Q5T3U5 1492 aa26.43■■□□□ 1.82
COMMD4-224ENST00000568877 KCNH8Q96L42 1107 aa26.41■■□□□ 1.82
COMMD4-224ENST00000568877 FAM69CQ0P6D2 419 aa26.39■■□□□ 1.82
COMMD4-224ENST00000568877 DIP2BQ9P265 1576 aa26.37■■□□□ 1.81
COMMD4-224ENST00000568877 TROQ12816 1431 aaPredicted RBP26.33■■□□□ 1.81
COMMD4-224ENST00000568877 GLI2P10070 1586 aa26.33■■□□□ 1.8
COMMD4-224ENST00000568877 APLP2Q06481 763 aa26.32■■□□□ 1.8
COMMD4-224ENST00000568877 MAP3K1Q13233 1512 aa26.31■■□□□ 1.8
COMMD4-224ENST00000568877 MAGI3Q5TCQ9 1506 aa26.31■■□□□ 1.8
COMMD4-224ENST00000568877 TIAM1Q13009 1591 aa26.31■■□□□ 1.8
COMMD4-224ENST00000568877 KIF13AQ9H1H9 1805 aa26.3■■□□□ 1.8
COMMD4-224ENST00000568877 CFAP43Q8NDM7 1665 aa26.29■■□□□ 1.8
COMMD4-224ENST00000568877 MTUS2Q5JR59 1369 aa26.28■■□□□ 1.8
COMMD4-224ENST00000568877 LRRC9Q6ZRR7 1453 aa26.22■■□□□ 1.79
COMMD4-224ENST00000568877 KIF14Q15058 1648 aa26.21■■□□□ 1.79
COMMD4-224ENST00000568877 ABCA9Q8IUA7 1624 aa26.21■■□□□ 1.79
COMMD4-224ENST00000568877 EHBP1L1Q8N3D4 1523 aa26.21■■□□□ 1.79
COMMD4-224ENST00000568877 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.21■■□□□ 1.79
COMMD4-224ENST00000568877 KANK4Q5T7N3 995 aaPredicted RBP26.21■■□□□ 1.79
COMMD4-224ENST00000568877 CD109Q6YHK3 1445 aa26.21■■□□□ 1.79
COMMD4-224ENST00000568877 MAP3K4Q9Y6R4 1608 aa26.2■■□□□ 1.78
COMMD4-224ENST00000568877 TTC37Q6PGP7 1564 aa26.16■■□□□ 1.78
COMMD4-224ENST00000568877 TSPOAP1O95153 1857 aa26.11■■□□□ 1.77
COMMD4-224ENST00000568877 PPRC1Q5VV67 1664 aaKnown RBP26.09■■□□□ 1.77
COMMD4-224ENST00000568877 PLCH2O75038 1416 aa26.08■■□□□ 1.77
COMMD4-224ENST00000568877 NCOA2Q15596 1464 aa26.08■■□□□ 1.77
COMMD4-224ENST00000568877 TEX14Q8IWB6 1497 aa26.08■■□□□ 1.77
COMMD4-224ENST00000568877 SUPT6HQ7KZ85 1726 aaKnown RBP26.08■■□□□ 1.76
COMMD4-224ENST00000568877 CCNB3Q8WWL7 1395 aa26.06■■□□□ 1.76
COMMD4-224ENST00000568877 GPATCH8Q9UKJ3 1502 aaKnown RBP26.04■■□□□ 1.76
COMMD4-224ENST00000568877 MYO5CQ9NQX4 1742 aa26.03■■□□□ 1.76
COMMD4-224ENST00000568877 ARAP3Q8WWN8 1544 aa26.02■■□□□ 1.76
COMMD4-224ENST00000568877 EFCAB2Q5VUJ9 269 aa26■■□□□ 1.75
COMMD4-224ENST00000568877 PPARGC1BQ86YN6 1023 aaKnown RBP26■■□□□ 1.75
COMMD4-224ENST00000568877 FANCAO15360 1455 aa25.99■■□□□ 1.75
COMMD4-224ENST00000568877 PREX2Q70Z35 1606 aa25.99■■□□□ 1.75
COMMD4-224ENST00000568877 ARHGAP5Q13017 1502 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms