RNA–Protein interactions for RNA: ENST00000568290.1

ATXN3-250, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-250ENST00000568290 CLIP1P30622 1438 aa11.4□□□□□ -0.58
ATXN3-250ENST00000568290 CLSPNQ9HAW4 1339 aa11.38□□□□□ -0.59
ATXN3-250ENST00000568290 VPS8Q8N3P4 1428 aa11.38□□□□□ -0.59
ATXN3-250ENST00000568290 ERICH3Q5RHP9 1530 aa11.37□□□□□ -0.59
ATXN3-250ENST00000568290 TOP2BQ02880 1626 aa11.36□□□□□ -0.59
ATXN3-250ENST00000568290 NCAPD3P42695 1498 aa11.36□□□□□ -0.59
ATXN3-250ENST00000568290 FBLN2P98095 1184 aa11.35□□□□□ -0.59
ATXN3-250ENST00000568290 SYNJ1O43426 1573 aa11.33□□□□□ -0.6
ATXN3-250ENST00000568290 BIVM-ERCC5R4GMW8 1640 aa11.32□□□□□ -0.6
ATXN3-250ENST00000568290 DIEXFQ68CQ4 756 aaKnown RBP11.32□□□□□ -0.6
ATXN3-250ENST00000568290 KIF27Q86VH2 1401 aa11.3□□□□□ -0.6
ATXN3-250ENST00000568290 ZNF316A6NFI3 1004 aaPredicted RBP11.29□□□□□ -0.6
ATXN3-250ENST00000568290 RUSC2Q8N2Y8 1516 aa11.28□□□□□ -0.6
ATXN3-250ENST00000568290 PRXQ9BXM0 1461 aa11.25□□□□□ -0.61
ATXN3-250ENST00000568290 OSCARQ8IYS5 282 aa11.24□□□□□ -0.61
ATXN3-250ENST00000568290 ACIN1Q9UKV3 1341 aaKnown RBP11.23□□□□□ -0.61
ATXN3-250ENST00000568290 CFTRP13569 1480 aa11.23□□□□□ -0.61
ATXN3-250ENST00000568290 FKBP8Q14318 412 aa11.22□□□□□ -0.61
ATXN3-250ENST00000568290 RAPGEF2Q9Y4G8 1499 aa11.22□□□□□ -0.61
ATXN3-250ENST00000568290 SPDYE4A6NLX3 237 aa11.17□□□□□ -0.62
ATXN3-250ENST00000568290 MYT1Q01538 1121 aa11.17□□□□□ -0.62
ATXN3-250ENST00000568290 PROM2Q8N271 834 aa11.17□□□□□ -0.62
ATXN3-250ENST00000568290 MAP3K1Q13233 1512 aa11.16□□□□□ -0.62
ATXN3-250ENST00000568290 PRDM2Q13029 1718 aa11.16□□□□□ -0.62
ATXN3-250ENST00000568290 SPDYE2BA6NHP3 402 aa11.15□□□□□ -0.62
ATXN3-250ENST00000568290 SPDYE6P0CI01 402 aa11.15□□□□□ -0.62
ATXN3-250ENST00000568290 SPDYE2Q495Y8 402 aa11.15□□□□□ -0.62
ATXN3-250ENST00000568290 SSUH2Q9Y2M2 353 aa11.15□□□□□ -0.62
ATXN3-250ENST00000568290 TTBK1Q5TCY1 1321 aaPredicted RBP11.13□□□□□ -0.63
ATXN3-250ENST00000568290 FHAD1B1AJZ9 1412 aa11.13□□□□□ -0.63
ATXN3-250ENST00000568290 CADPSQ9ULU8 1353 aa11.13□□□□□ -0.63
ATXN3-250ENST00000568290 RRBP1Q9P2E9 1410 aaKnown RBP11.11□□□□□ -0.63
ATXN3-250ENST00000568290 CUX1P39880 1505 aa11.11□□□□□ -0.63
ATXN3-250ENST00000568290 CUX2O14529 1486 aa11.08□□□□□ -0.64
ATXN3-250ENST00000568290 ARAP1Q96P48 1450 aa11.08□□□□□ -0.64
ATXN3-250ENST00000568290 TIMELESSQ9UNS1 1208 aa11.08□□□□□ -0.64
ATXN3-250ENST00000568290 CCNB3Q8WWL7 1395 aa11.07□□□□□ -0.64
ATXN3-250ENST00000568290 RBM42Q9BTD8 480 aaKnown RBP11.06□□□□□ -0.64
ATXN3-250ENST00000568290 ZNF692Q9BU19 519 aaPredicted RBP11.06□□□□□ -0.64
ATXN3-250ENST00000568290 CARMIL1Q5VZK9 1371 aa11.04□□□□□ -0.64
ATXN3-250ENST00000568290 IGF1RP08069 1367 aa11.03□□□□□ -0.64
ATXN3-250ENST00000568290 NEUROD1Q13562 356 aa11.02□□□□□ -0.65
ATXN3-250ENST00000568290 EFCAB5A4FU69 1503 aa11.02□□□□□ -0.65
ATXN3-250ENST00000568290 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.02□□□□□ -0.65
ATXN3-250ENST00000568290 ARHGAP35Q9NRY4 1499 aa11.01□□□□□ -0.65
ATXN3-250ENST00000568290 DHX57Q6P158 1386 aaKnown RBP11.01□□□□□ -0.65
ATXN3-250ENST00000568290 RANGAP1P46060 587 aaPredicted RBP11□□□□□ -0.65
ATXN3-250ENST00000568290 GTF3C3Q9Y5Q9 886 aa11□□□□□ -0.65
ATXN3-250ENST00000568290 AQRO60306 1485 aaKnown RBP eCLIP10.99□□□□□ -0.65
ATXN3-250ENST00000568290 CC2D2AQ9P2K1 1620 aa10.98□□□□□ -0.65
ATXN3-250ENST00000568290 AKT1S1Q96B36 256 aa10.98□□□□□ -0.65
ATXN3-250ENST00000568290 TIAM1Q13009 1591 aa10.98□□□□□ -0.65
ATXN3-250ENST00000568290 CUL7Q14999 1698 aa10.98□□□□□ -0.65
ATXN3-250ENST00000568290 FMN1Q68DA7 1419 aa10.97□□□□□ -0.65
ATXN3-250ENST00000568290 FGD5Q6ZNL6 1462 aa10.97□□□□□ -0.65
ATXN3-250ENST00000568290 DNMBPQ6XZF7 1577 aa10.97□□□□□ -0.65
ATXN3-250ENST00000568290 ABCA10Q8WWZ4 1543 aa10.95□□□□□ -0.66
ATXN3-250ENST00000568290 FYCO1Q9BQS8 1478 aa10.95□□□□□ -0.66
ATXN3-250ENST00000568290 FANCD2Q9BXW9 1451 aa10.95□□□□□ -0.66
ATXN3-250ENST00000568290 SETD5Q9C0A6 1442 aa10.95□□□□□ -0.66
ATXN3-250ENST00000568290 LRRC9Q6ZRR7 1453 aa10.94□□□□□ -0.66
ATXN3-250ENST00000568290 KANK4Q5T7N3 995 aaPredicted RBP10.93□□□□□ -0.66
ATXN3-250ENST00000568290 CASKIN1Q8WXD9 1431 aa10.92□□□□□ -0.66
ATXN3-250ENST00000568290 LAMC3Q9Y6N6 1575 aa10.91□□□□□ -0.66
ATXN3-250ENST00000568290 MIER1Q8N108 512 aa10.91□□□□□ -0.66
ATXN3-250ENST00000568290 CFAP43Q8NDM7 1665 aa10.89□□□□□ -0.67
ATXN3-250ENST00000568290 PDS5BQ9NTI5 1447 aa10.89□□□□□ -0.67
ATXN3-250ENST00000568290 REM2Q8IYK8 340 aaPredicted RBP10.88□□□□□ -0.67
ATXN3-250ENST00000568290 THOC2Q8NI27 1593 aaKnown RBP10.88□□□□□ -0.67
ATXN3-250ENST00000568290 RAB3GAP2Q9H2M9 1393 aa10.88□□□□□ -0.67
ATXN3-250ENST00000568290 TOPBP1Q92547 1522 aa10.87□□□□□ -0.67
ATXN3-250ENST00000568290 YTHDC1Q96MU7 727 aaKnown RBP10.85□□□□□ -0.67
ATXN3-250ENST00000568290 FAM50AQ14320 339 aaKnown RBP10.84□□□□□ -0.67
ATXN3-250ENST00000568290 CTTNBP2Q8WZ74 1663 aa10.83□□□□□ -0.68
ATXN3-250ENST00000568290 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.68
ATXN3-250ENST00000568290 MTUS2Q5JR59 1369 aa10.83□□□□□ -0.68
ATXN3-250ENST00000568290 KIF21AQ7Z4S6 1674 aa10.82□□□□□ -0.68
ATXN3-250ENST00000568290 CCDC18Q5T9S5 1454 aa10.82□□□□□ -0.68
ATXN3-250ENST00000568290 ATP1B4Q9UN42 357 aaPredicted RBP10.81□□□□□ -0.68
ATXN3-250ENST00000568290 ITGAEP38570 1179 aa10.8□□□□□ -0.68
ATXN3-250ENST00000568290 PCF11O94913 1555 aaKnown RBP10.8□□□□□ -0.68
ATXN3-250ENST00000568290 PHLDB1Q86UU1 1377 aa10.78□□□□□ -0.68
ATXN3-250ENST00000568290 FBXO3Q9UK99 471 aa10.78□□□□□ -0.68
ATXN3-250ENST00000568290 GAPVD1Q14C86 1478 aa10.78□□□□□ -0.68
ATXN3-250ENST00000568290 EHBP1L1Q8N3D4 1523 aa10.78□□□□□ -0.68
ATXN3-250ENST00000568290 TONSLQ96HA7 1378 aa10.77□□□□□ -0.68
ATXN3-250ENST00000568290 FGD6Q6ZV73 1430 aa10.77□□□□□ -0.68
ATXN3-250ENST00000568290 CCER2I3L3R5 266 aa10.77□□□□□ -0.69
ATXN3-250ENST00000568290 PITPNM1O00562 1244 aa10.77□□□□□ -0.69
ATXN3-250ENST00000568290 SPDYE1Q8NFV5 336 aaPredicted RBP10.77□□□□□ -0.69
ATXN3-250ENST00000568290 UACAQ9BZF9 1416 aa10.76□□□□□ -0.69
ATXN3-250ENST00000568290 ANP32CO43423 234 aa10.76□□□□□ -0.69
ATXN3-250ENST00000568290 HFM1A2PYH4 1435 aa10.75□□□□□ -0.69
ATXN3-250ENST00000568290 FHOD3Q2V2M9 1422 aa10.75□□□□□ -0.69
ATXN3-250ENST00000568290 STAG3Q9UJ98 1225 aa10.75□□□□□ -0.69
ATXN3-250ENST00000568290 WDR97A6NE52 1622 aa10.75□□□□□ -0.69
ATXN3-250ENST00000568290 SUPT6HQ7KZ85 1726 aaKnown RBP10.75□□□□□ -0.69
ATXN3-250ENST00000568290 MYOM3Q5VTT5 1437 aa10.75□□□□□ -0.69
ATXN3-250ENST00000568290 AKNAQ7Z591 1439 aa10.75□□□□□ -0.69
ATXN3-250ENST00000568290 MAPKBP1O60336 1514 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms