RNA–Protein interactions for RNA: ENST00000568290.1

ATXN3-250, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-250ENST00000568290 AEBP2Q6ZN18 517 aaPredicted RBP19.84■□□□□ 0.77
ATXN3-250ENST00000568290 CHIC1Q5VXU3 224 aa19.39■□□□□ 0.69
ATXN3-250ENST00000568290 PHF23Q9BUL5 403 aaPredicted RBP17.1■□□□□ 0.33
ATXN3-250ENST00000568290 SENP3Q9H4L4 574 aaPredicted RBP16.71■□□□□ 0.27
ATXN3-250ENST00000568290 PLPPR3Q6T4P5 718 aa15.7■□□□□ 0.1
ATXN3-250ENST00000568290 FOXD1Q16676 465 aa15.56■□□□□ 0.08
ATXN3-250ENST00000568290 NISCHQ9Y2I1 1504 aa15.52■□□□□ 0.07
ATXN3-250ENST00000568290 PPP6R1Q9UPN7 881 aa15.05■□□□□ -0
ATXN3-250ENST00000568290 ADRA2BP18089 450 aa14.96□□□□□ -0.01
ATXN3-250ENST00000568290 PIAS4Q8N2W9 510 aaPredicted RBP14.59□□□□□ -0.07
ATXN3-250ENST00000568290 MSH5O43196 834 aa14.27□□□□□ -0.13
ATXN3-250ENST00000568290 PPP4R3CPQ6ZMV5 832 aa13.85□□□□□ -0.19
ATXN3-250ENST00000568290 KCNA4P22459 653 aa13.61□□□□□ -0.23
ATXN3-250ENST00000568290 SCAF1Q9H7N4 1312 aaKnown RBP13.61□□□□□ -0.23
ATXN3-250ENST00000568290 MAPK8IP2Q13387 824 aaPredicted RBP13.58□□□□□ -0.24
ATXN3-250ENST00000568290 CNKSR2Q8WXI2 1034 aa13.45□□□□□ -0.26
ATXN3-250ENST00000568290 NCBP3Q53F19 620 aaKnown RBP13.42□□□□□ -0.26
ATXN3-250ENST00000568290 DMRT2Q9Y5R5 561 aa13.41□□□□□ -0.26
ATXN3-250ENST00000568290 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
ATXN3-250ENST00000568290 NPM3O75607 178 aaKnown RBP13.34□□□□□ -0.27
ATXN3-250ENST00000568290 RNF216Q9NWF9 866 aaPredicted RBP13.2□□□□□ -0.3
ATXN3-250ENST00000568290 HOXD11P31277 338 aaPredicted RBP13.19□□□□□ -0.3
ATXN3-250ENST00000568290 ZCCHC6Q5VYS8 1495 aaKnown RBP13.13□□□□□ -0.31
ATXN3-250ENST00000568290 DNAJC5BQ9UF47 199 aa13.11□□□□□ -0.31
ATXN3-250ENST00000568290 DCAF1Q9Y4B6 1507 aa12.96□□□□□ -0.33
ATXN3-250ENST00000568290 POTEDQ86YR6 584 aa12.94□□□□□ -0.34
ATXN3-250ENST00000568290 SLC4A1APQ9BWU0 796 aaKnown RBP12.9□□□□□ -0.34
ATXN3-250ENST00000568290 SHROOM4Q9ULL8 1493 aa12.9□□□□□ -0.34
ATXN3-250ENST00000568290 SUPT5HO00267 1087 aaKnown RBP12.79□□□□□ -0.36
ATXN3-250ENST00000568290 DCAF8L2P0C7V8 631 aa12.68□□□□□ -0.38
ATXN3-250ENST00000568290 MYO15BQ96JP2 1530 aa12.64□□□□□ -0.39
ATXN3-250ENST00000568290 SLC4A2P04920 1241 aa12.63□□□□□ -0.39
ATXN3-250ENST00000568290 DCAF8L1A6NGE4 600 aa12.6□□□□□ -0.39
ATXN3-250ENST00000568290 ZBTB22O15209 634 aa12.6□□□□□ -0.39
ATXN3-250ENST00000568290 EHMT2Q96KQ7 1210 aa12.55□□□□□ -0.4
ATXN3-250ENST00000568290 CSRNP3Q8WYN3 585 aa12.53□□□□□ -0.4
ATXN3-250ENST00000568290 FOXD4L1Q9NU39 408 aa12.49□□□□□ -0.41
ATXN3-250ENST00000568290 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.39□□□□□ -0.43
ATXN3-250ENST00000568290 ABCC9O60706 1549 aa12.38□□□□□ -0.43
ATXN3-250ENST00000568290 NACADO15069 1562 aa12.35□□□□□ -0.43
ATXN3-250ENST00000568290 U3KPZ7 1027 aaPredicted RBP12.34□□□□□ -0.43
ATXN3-250ENST00000568290 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
ATXN3-250ENST00000568290 MYCNP04198 464 aaPredicted RBP12.28□□□□□ -0.44
ATXN3-250ENST00000568290 HRCP23327 699 aa12.25□□□□□ -0.45
ATXN3-250ENST00000568290 RB1CC1Q8TDY2 1594 aa12.22□□□□□ -0.45
ATXN3-250ENST00000568290 RSF1Q96T23 1441 aaPredicted RBP12.21□□□□□ -0.45
ATXN3-250ENST00000568290 SCRIBQ14160 1630 aa12.2□□□□□ -0.46
ATXN3-250ENST00000568290 ZEB1P37275 1124 aaPredicted RBP12.15□□□□□ -0.46
ATXN3-250ENST00000568290 TRIM26Q12899 539 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-250ENST00000568290 TRIM41Q8WV44 630 aa12.12□□□□□ -0.47
ATXN3-250ENST00000568290 C1QBPQ07021 282 aaKnown RBP12.1□□□□□ -0.47
ATXN3-250ENST00000568290 PCGF6Q9BYE7 350 aa12.1□□□□□ -0.47
ATXN3-250ENST00000568290 ATXN8OSP0DMR3 200 aa12.09□□□□□ -0.47
ATXN3-250ENST00000568290 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.08□□□□□ -0.48
ATXN3-250ENST00000568290 HNRNPUL2Q1KMD3 747 aaKnown RBP12.08□□□□□ -0.48
ATXN3-250ENST00000568290 SAMD1Q6SPF0 538 aaPredicted RBP12.07□□□□□ -0.48
ATXN3-250ENST00000568290 BAZ1AQ9NRL2 1556 aaPredicted RBP12.03□□□□□ -0.48
ATXN3-250ENST00000568290 ATF5Q9Y2D1 282 aaPredicted RBP12.02□□□□□ -0.49
ATXN3-250ENST00000568290 LOC105371045A0A1W2PR82 267 aa11.95□□□□□ -0.5
ATXN3-250ENST00000568290 SPINK5Q9NQ38 1064 aaPredicted RBP11.94□□□□□ -0.5
ATXN3-250ENST00000568290 APLP2Q06481 763 aa11.91□□□□□ -0.5
ATXN3-250ENST00000568290 MROH2BQ7Z745 1585 aa11.91□□□□□ -0.5
ATXN3-250ENST00000568290 CECR2Q9BXF3 1484 aa11.87□□□□□ -0.51
ATXN3-250ENST00000568290 EEA1Q15075 1411 aa11.86□□□□□ -0.51
ATXN3-250ENST00000568290 TOP2AP11388 1531 aaKnown RBP11.86□□□□□ -0.51
ATXN3-250ENST00000568290 WIZO95785 1651 aa11.81□□□□□ -0.52
ATXN3-250ENST00000568290 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
ATXN3-250ENST00000568290 ZNF219Q9P2Y4 722 aaPredicted RBP11.79□□□□□ -0.52
ATXN3-250ENST00000568290 SMARCA4P51532 1647 aa11.78□□□□□ -0.52
ATXN3-250ENST00000568290 CAPN15O75808 1086 aa11.77□□□□□ -0.53
ATXN3-250ENST00000568290 TRHP20396 242 aaPredicted RBP11.74□□□□□ -0.53
ATXN3-250ENST00000568290 FAM9AQ8IZU1 332 aaPredicted RBP11.74□□□□□ -0.53
ATXN3-250ENST00000568290 DSG3P32926 999 aa11.71□□□□□ -0.53
ATXN3-250ENST00000568290 EIF4G1Q04637 1599 aaKnown RBP11.7□□□□□ -0.54
ATXN3-250ENST00000568290 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
ATXN3-250ENST00000568290 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
ATXN3-250ENST00000568290 TNIKQ9UKE5 1360 aa11.67□□□□□ -0.54
ATXN3-250ENST00000568290 SMARCA2P51531 1590 aa11.67□□□□□ -0.54
ATXN3-250ENST00000568290 PEG3Q9GZU2 1588 aa11.67□□□□□ -0.54
ATXN3-250ENST00000568290 POLA2Q14181 598 aa11.62□□□□□ -0.55
ATXN3-250ENST00000568290 GOLGA3Q08378 1498 aa11.6□□□□□ -0.55
ATXN3-250ENST00000568290 PPARGC1BQ86YN6 1023 aaKnown RBP11.6□□□□□ -0.55
ATXN3-250ENST00000568290 ABCB7O75027 752 aa11.59□□□□□ -0.55
ATXN3-250ENST00000568290 UNC13AQ9UPW8 1703 aa11.59□□□□□ -0.55
ATXN3-250ENST00000568290 PELP1Q8IZL8 1130 aaKnown RBP11.57□□□□□ -0.56
ATXN3-250ENST00000568290 CEP162Q5TB80 1403 aa11.56□□□□□ -0.56
ATXN3-250ENST00000568290 CEP164Q9UPV0 1460 aa11.56□□□□□ -0.56
ATXN3-250ENST00000568290 CCER1Q8TC90 406 aaPredicted RBP11.55□□□□□ -0.56
ATXN3-250ENST00000568290 UBTFP17480 764 aaKnown RBP11.54□□□□□ -0.56
ATXN3-250ENST00000568290 BAZ1BQ9UIG0 1483 aaKnown RBP11.52□□□□□ -0.56
ATXN3-250ENST00000568290 MKRN4PQ13434 485 aaPredicted RBP11.52□□□□□ -0.57
ATXN3-250ENST00000568290 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
ATXN3-250ENST00000568290 BICRAQ9NZM4 1560 aa11.5□□□□□ -0.57
ATXN3-250ENST00000568290 KIF21BO75037 1637 aa11.49□□□□□ -0.57
ATXN3-250ENST00000568290 ATAD2BQ9ULI0 1458 aa11.49□□□□□ -0.57
ATXN3-250ENST00000568290 SOGA1O94964 1423 aa11.44□□□□□ -0.58
ATXN3-250ENST00000568290 CENPBP07199 599 aaPredicted RBP11.44□□□□□ -0.58
ATXN3-250ENST00000568290 ZBTB12Q9Y330 459 aaPredicted RBP11.42□□□□□ -0.58
ATXN3-250ENST00000568290 PABPN1Q86U42 306 aaKnown RBP eCLIP11.41□□□□□ -0.58
ATXN3-250ENST00000568290 HMGXB3Q12766 1538 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms