RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 KIF21BO75037 1637 aa20.22■□□□□ 0.83
SF3B3-208ENST00000567250 SHROOM2Q13796 1616 aa20.22■□□□□ 0.83
SF3B3-208ENST00000567250 CSRNP3Q8WYN3 585 aa20.21■□□□□ 0.83
SF3B3-208ENST00000567250 RIMBP3CA6NJZ7 1639 aa20.2■□□□□ 0.82
SF3B3-208ENST00000567250 RIMBP3BA6NNM3 1639 aa20.2■□□□□ 0.82
SF3B3-208ENST00000567250 RIMBP3Q9UFD9 1639 aa20.2■□□□□ 0.82
SF3B3-208ENST00000567250 ARHGEF11O15085 1522 aa20.19■□□□□ 0.82
SF3B3-208ENST00000567250 KIAA0586Q9BVV6 1533 aa20.19■□□□□ 0.82
SF3B3-208ENST00000567250 IQGAP2Q13576 1575 aa20.17■□□□□ 0.82
SF3B3-208ENST00000567250 FAM9AQ8IZU1 332 aaPredicted RBP20.14■□□□□ 0.81
SF3B3-208ENST00000567250 GOLGA3Q08378 1498 aa20.07■□□□□ 0.8
SF3B3-208ENST00000567250 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
SF3B3-208ENST00000567250 UGGT2Q9NYU1 1516 aa20.03■□□□□ 0.8
SF3B3-208ENST00000567250 JPH4Q96JJ6 628 aa20.03■□□□□ 0.8
SF3B3-208ENST00000567250 ERCC6L2Q5T890 1561 aa20.02■□□□□ 0.8
SF3B3-208ENST00000567250 ARAP1Q96P48 1450 aa20.01■□□□□ 0.79
SF3B3-208ENST00000567250 CARMIL2Q6F5E8 1435 aa20■□□□□ 0.79
SF3B3-208ENST00000567250 KIAA0556O60303 1618 aa19.98■□□□□ 0.79
SF3B3-208ENST00000567250 DISP1Q96F81 1524 aa19.92■□□□□ 0.78
SF3B3-208ENST00000567250 SAMD9Q5K651 1589 aa19.91■□□□□ 0.78
SF3B3-208ENST00000567250 EFCAB5A4FU69 1503 aa19.89■□□□□ 0.77
SF3B3-208ENST00000567250 UBTFP17480 764 aaKnown RBP19.88■□□□□ 0.77
SF3B3-208ENST00000567250 TNIKQ9UKE5 1360 aa19.87■□□□□ 0.77
SF3B3-208ENST00000567250 CYB5RLQ6IPT4 315 aa19.86■□□□□ 0.77
SF3B3-208ENST00000567250 EHMT2Q96KQ7 1210 aa19.83■□□□□ 0.77
SF3B3-208ENST00000567250 PTPRGP23470 1445 aa19.81■□□□□ 0.76
SF3B3-208ENST00000567250 ADCY10Q96PN6 1610 aa19.78■□□□□ 0.76
SF3B3-208ENST00000567250 ABCC2Q92887 1545 aa19.74■□□□□ 0.75
SF3B3-208ENST00000567250 UHRF1BP1LA0JNW5 1464 aa19.73■□□□□ 0.75
SF3B3-208ENST00000567250 RANGAP1P46060 587 aaPredicted RBP19.72■□□□□ 0.75
SF3B3-208ENST00000567250 UACAQ9BZF9 1416 aa19.72■□□□□ 0.75
SF3B3-208ENST00000567250 TTBK1Q5TCY1 1321 aaPredicted RBP19.71■□□□□ 0.75
SF3B3-208ENST00000567250 ABCA8O94911 1581 aa19.7■□□□□ 0.74
SF3B3-208ENST00000567250 FHOD3Q2V2M9 1422 aa19.7■□□□□ 0.74
SF3B3-208ENST00000567250 ARHGAP35Q9NRY4 1499 aa19.7■□□□□ 0.74
SF3B3-208ENST00000567250 RAPGEF6Q8TEU7 1601 aa19.69■□□□□ 0.74
SF3B3-208ENST00000567250 P3H3Q8IVL6 736 aa19.67■□□□□ 0.74
SF3B3-208ENST00000567250 CLIP1P30622 1438 aa19.67■□□□□ 0.74
SF3B3-208ENST00000567250 PLB1Q6P1J6 1458 aa19.67■□□□□ 0.74
SF3B3-208ENST00000567250 FMN1Q68DA7 1419 aa19.66■□□□□ 0.74
SF3B3-208ENST00000567250 MAPKBP1O60336 1514 aa19.65■□□□□ 0.74
SF3B3-208ENST00000567250 ZCCHC11Q5TAX3 1644 aaKnown RBP19.64■□□□□ 0.73
SF3B3-208ENST00000567250 CEP162Q5TB80 1403 aa19.63■□□□□ 0.73
SF3B3-208ENST00000567250 NPM1P06748 294 aaKnown RBP eCLIP19.63■□□□□ 0.73
SF3B3-208ENST00000567250 KDM5BQ9UGL1 1544 aa19.61■□□□□ 0.73
SF3B3-208ENST00000567250 HECW1Q76N89 1606 aa19.61■□□□□ 0.73
SF3B3-208ENST00000567250 LOC105371045A0A1W2PR82 267 aa19.56■□□□□ 0.72
SF3B3-208ENST00000567250 PCF11O94913 1555 aaKnown RBP19.55■□□□□ 0.72
SF3B3-208ENST00000567250 NUP153P49790 1475 aaKnown RBP19.54■□□□□ 0.72
SF3B3-208ENST00000567250 FYCO1Q9BQS8 1478 aa19.51■□□□□ 0.71
SF3B3-208ENST00000567250 KIF13AQ9H1H9 1805 aa19.51■□□□□ 0.71
SF3B3-208ENST00000567250 DIP2BQ9P265 1576 aa19.5■□□□□ 0.71
SF3B3-208ENST00000567250 ASXL2Q76L83 1435 aa19.49■□□□□ 0.71
SF3B3-208ENST00000567250 CASKIN1Q8WXD9 1431 aa19.48■□□□□ 0.71
SF3B3-208ENST00000567250 LRRIQ1Q96JM4 1722 aa19.47■□□□□ 0.71
SF3B3-208ENST00000567250 ATP10BO94823 1461 aa19.47■□□□□ 0.71
SF3B3-208ENST00000567250 ABCC10Q5T3U5 1492 aa19.47■□□□□ 0.71
SF3B3-208ENST00000567250 CCDC18Q5T9S5 1454 aa19.47■□□□□ 0.71
SF3B3-208ENST00000567250 WDR7Q9Y4E6 1490 aa19.47■□□□□ 0.71
SF3B3-208ENST00000567250 EPRSP07814 1512 aaKnown RBP19.45■□□□□ 0.7
SF3B3-208ENST00000567250 TRHP20396 242 aaPredicted RBP19.43■□□□□ 0.7
SF3B3-208ENST00000567250 CDK13Q14004 1512 aaKnown RBP19.42■□□□□ 0.7
SF3B3-208ENST00000567250 GLI2P10070 1586 aa19.42■□□□□ 0.7
SF3B3-208ENST00000567250 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.4■□□□□ 0.7
SF3B3-208ENST00000567250 HNRNPUL2Q1KMD3 747 aaKnown RBP19.4■□□□□ 0.7
SF3B3-208ENST00000567250 VPS8Q8N3P4 1428 aa19.4■□□□□ 0.7
SF3B3-208ENST00000567250 ARID3CA6NKF2 412 aa19.39■□□□□ 0.69
SF3B3-208ENST00000567250 ATP1B4Q9UN42 357 aaPredicted RBP19.39■□□□□ 0.69
SF3B3-208ENST00000567250 CFAP43Q8NDM7 1665 aa19.38■□□□□ 0.69
SF3B3-208ENST00000567250 MAP3K4Q9Y6R4 1608 aa19.36■□□□□ 0.69
SF3B3-208ENST00000567250 KIF14Q15058 1648 aa19.33■□□□□ 0.69
SF3B3-208ENST00000567250 ABCA9Q8IUA7 1624 aa19.33■□□□□ 0.69
SF3B3-208ENST00000567250 FAM69CQ0P6D2 419 aa19.33■□□□□ 0.68
SF3B3-208ENST00000567250 CDK11AQ9UQ88 783 aaPredicted RBP19.33■□□□□ 0.68
SF3B3-208ENST00000567250 TSPOAP1O95153 1857 aa19.32■□□□□ 0.68
SF3B3-208ENST00000567250 PLEKHD1A6NEE1 506 aa19.31■□□□□ 0.68
SF3B3-208ENST00000567250 TROQ12816 1431 aaPredicted RBP19.28■□□□□ 0.68
SF3B3-208ENST00000567250 TIAM1Q13009 1591 aa19.27■□□□□ 0.68
SF3B3-208ENST00000567250 PPRC1Q5VV67 1664 aaKnown RBP19.27■□□□□ 0.68
SF3B3-208ENST00000567250 EHBP1L1Q8N3D4 1523 aa19.26■□□□□ 0.67
SF3B3-208ENST00000567250 TEX14Q8IWB6 1497 aa19.26■□□□□ 0.67
SF3B3-208ENST00000567250 TTC37Q6PGP7 1564 aa19.25■□□□□ 0.67
SF3B3-208ENST00000567250 PLPPR3Q6T4P5 718 aa19.25■□□□□ 0.67
SF3B3-208ENST00000567250 KCNH8Q96L42 1107 aa19.25■□□□□ 0.67
SF3B3-208ENST00000567250 MYO5CQ9NQX4 1742 aa19.25■□□□□ 0.67
SF3B3-208ENST00000567250 MAP3K1Q13233 1512 aa19.25■□□□□ 0.67
SF3B3-208ENST00000567250 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.24■□□□□ 0.67
SF3B3-208ENST00000567250 MAGI3Q5TCQ9 1506 aa19.23■□□□□ 0.67
SF3B3-208ENST00000567250 CFAP74Q9C0B2 1584 aa19.23■□□□□ 0.67
SF3B3-208ENST00000567250 CD109Q6YHK3 1445 aa19.22■□□□□ 0.67
SF3B3-208ENST00000567250 MTUS2Q5JR59 1369 aa19.2■□□□□ 0.66
SF3B3-208ENST00000567250 SUPT6HQ7KZ85 1726 aaKnown RBP19.2■□□□□ 0.66
SF3B3-208ENST00000567250 ARAP3Q8WWN8 1544 aa19.17■□□□□ 0.66
SF3B3-208ENST00000567250 PREX2Q70Z35 1606 aa19.17■□□□□ 0.66
SF3B3-208ENST00000567250 KDM6BO15054 1643 aa19.16■□□□□ 0.66
SF3B3-208ENST00000567250 APLP2Q06481 763 aa19.16■□□□□ 0.66
SF3B3-208ENST00000567250 ITSN2Q9NZM3 1697 aa19.16■□□□□ 0.66
SF3B3-208ENST00000567250 CDC42BPAQ5VT25 1732 aa19.14■□□□□ 0.66
SF3B3-208ENST00000567250 LRRC9Q6ZRR7 1453 aa19.14■□□□□ 0.65
SF3B3-208ENST00000567250 NEO1Q92859 1461 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms