RNA–Protein interactions for RNA: ENST00000566307.1

LSM3P5-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 5, humanhuman

BASIC

Gene LSM3P5, Length 306 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P5-201ENST00000566307 GRIN2BQ13224 1484 aa13.97□□□□□ -0.17
LSM3P5-201ENST00000566307 PBRM1Q86U86 1689 aa13.97□□□□□ -0.17
LSM3P5-201ENST00000566307 VPS8Q8N3P4 1428 aa13.97□□□□□ -0.17
LSM3P5-201ENST00000566307 SCAF1Q9H7N4 1312 aaKnown RBP13.96□□□□□ -0.17
LSM3P5-201ENST00000566307 FHAD1B1AJZ9 1412 aa13.95□□□□□ -0.18
LSM3P5-201ENST00000566307 ADAMTS12P58397 1594 aa13.93□□□□□ -0.18
LSM3P5-201ENST00000566307 CTTNBP2Q8WZ74 1663 aa13.92□□□□□ -0.18
LSM3P5-201ENST00000566307 EFCAB5A4FU69 1503 aa13.9□□□□□ -0.18
LSM3P5-201ENST00000566307 TRIM26Q12899 539 aaPredicted RBP13.9□□□□□ -0.18
LSM3P5-201ENST00000566307 AQRO60306 1485 aaKnown RBP eCLIP13.9□□□□□ -0.18
LSM3P5-201ENST00000566307 ARAP1Q96P48 1450 aa13.9□□□□□ -0.18
LSM3P5-201ENST00000566307 EIF4G3O43432 1585 aaKnown RBP13.9□□□□□ -0.18
LSM3P5-201ENST00000566307 ZNF608Q9ULD9 1512 aaPredicted RBP13.9□□□□□ -0.19
LSM3P5-201ENST00000566307 ARHGAP35Q9NRY4 1499 aa13.89□□□□□ -0.19
LSM3P5-201ENST00000566307 MAGI1Q96QZ7 1491 aaPredicted RBP13.88□□□□□ -0.19
LSM3P5-201ENST00000566307 PPP4R3CPQ6ZMV5 832 aa13.84□□□□□ -0.19
LSM3P5-201ENST00000566307 SNAPC4Q5SXM2 1469 aa13.81□□□□□ -0.2
LSM3P5-201ENST00000566307 MAP3K1Q13233 1512 aa13.81□□□□□ -0.2
LSM3P5-201ENST00000566307 SAMD9Q5K651 1589 aa13.81□□□□□ -0.2
LSM3P5-201ENST00000566307 SYNJ2O15056 1496 aa13.8□□□□□ -0.2
LSM3P5-201ENST00000566307 PCGF6Q9BYE7 350 aa13.78□□□□□ -0.2
LSM3P5-201ENST00000566307 GRIN2AQ12879 1464 aa13.78□□□□□ -0.2
LSM3P5-201ENST00000566307 IQGAP2Q13576 1575 aa13.77□□□□□ -0.21
LSM3P5-201ENST00000566307 KIAA0586Q9BVV6 1533 aa13.77□□□□□ -0.21
LSM3P5-201ENST00000566307 UGGT2Q9NYU1 1516 aa13.75□□□□□ -0.21
LSM3P5-201ENST00000566307 FMN1Q68DA7 1419 aa13.74□□□□□ -0.21
LSM3P5-201ENST00000566307 APLP2Q06481 763 aa13.73□□□□□ -0.21
LSM3P5-201ENST00000566307 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
LSM3P5-201ENST00000566307 FYCO1Q9BQS8 1478 aa13.73□□□□□ -0.21
LSM3P5-201ENST00000566307 NUP160Q12769 1436 aa13.73□□□□□ -0.21
LSM3P5-201ENST00000566307 CASKIN1Q8WXD9 1431 aa13.72□□□□□ -0.21
LSM3P5-201ENST00000566307 FHOD3Q2V2M9 1422 aa13.69□□□□□ -0.22
LSM3P5-201ENST00000566307 TIAM1Q13009 1591 aa13.68□□□□□ -0.22
LSM3P5-201ENST00000566307 RANGAP1P46060 587 aaPredicted RBP13.68□□□□□ -0.22
LSM3P5-201ENST00000566307 CFAP43Q8NDM7 1665 aa13.68□□□□□ -0.22
LSM3P5-201ENST00000566307 PCF11O94913 1555 aaKnown RBP13.67□□□□□ -0.22
LSM3P5-201ENST00000566307 CEP170Q5SW79 1584 aa13.66□□□□□ -0.22
LSM3P5-201ENST00000566307 NCBP3Q53F19 620 aaKnown RBP13.65□□□□□ -0.22
LSM3P5-201ENST00000566307 CHMP7Q8WUX9 453 aaPredicted RBP13.65□□□□□ -0.22
LSM3P5-201ENST00000566307 KIAA0556O60303 1618 aa13.64□□□□□ -0.23
LSM3P5-201ENST00000566307 DISP1Q96F81 1524 aa13.63□□□□□ -0.23
LSM3P5-201ENST00000566307 LRRC9Q6ZRR7 1453 aa13.61□□□□□ -0.23
LSM3P5-201ENST00000566307 PPARGC1BQ86YN6 1023 aaKnown RBP13.6□□□□□ -0.23
LSM3P5-201ENST00000566307 CCDC18Q5T9S5 1454 aa13.59□□□□□ -0.23
LSM3P5-201ENST00000566307 RRBP1Q9P2E9 1410 aaKnown RBP13.58□□□□□ -0.24
LSM3P5-201ENST00000566307 HECW1Q76N89 1606 aa13.58□□□□□ -0.24
LSM3P5-201ENST00000566307 KANK4Q5T7N3 995 aaPredicted RBP13.57□□□□□ -0.24
LSM3P5-201ENST00000566307 CARMIL2Q6F5E8 1435 aa13.56□□□□□ -0.24
LSM3P5-201ENST00000566307 CHD1O14646 1710 aa13.56□□□□□ -0.24
LSM3P5-201ENST00000566307 P3H3Q8IVL6 736 aa13.56□□□□□ -0.24
LSM3P5-201ENST00000566307 SHROOM2Q13796 1616 aa13.54□□□□□ -0.24
LSM3P5-201ENST00000566307 HRCP23327 699 aa13.53□□□□□ -0.24
LSM3P5-201ENST00000566307 JPH4Q96JJ6 628 aa13.53□□□□□ -0.24
LSM3P5-201ENST00000566307 LRRIQ1Q96JM4 1722 aa13.53□□□□□ -0.24
LSM3P5-201ENST00000566307 EHBP1L1Q8N3D4 1523 aa13.52□□□□□ -0.25
LSM3P5-201ENST00000566307 FBLN2P98095 1184 aa13.51□□□□□ -0.25
LSM3P5-201ENST00000566307 RAPGEF6Q8TEU7 1601 aa13.5□□□□□ -0.25
LSM3P5-201ENST00000566307 EPRSP07814 1512 aaKnown RBP13.5□□□□□ -0.25
LSM3P5-201ENST00000566307 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.5□□□□□ -0.25
LSM3P5-201ENST00000566307 HOXD11P31277 338 aaPredicted RBP13.5□□□□□ -0.25
LSM3P5-201ENST00000566307 CLASP1Q7Z460 1538 aa13.49□□□□□ -0.25
LSM3P5-201ENST00000566307 ARHGEF11O15085 1522 aa13.48□□□□□ -0.25
LSM3P5-201ENST00000566307 CCNB3Q8WWL7 1395 aa13.47□□□□□ -0.25
LSM3P5-201ENST00000566307 NPM3O75607 178 aaKnown RBP13.47□□□□□ -0.25
LSM3P5-201ENST00000566307 DCAF8L1A6NGE4 600 aa13.46□□□□□ -0.25
LSM3P5-201ENST00000566307 NUP153P49790 1475 aaKnown RBP13.46□□□□□ -0.25
LSM3P5-201ENST00000566307 MTUS2Q5JR59 1369 aa13.45□□□□□ -0.26
LSM3P5-201ENST00000566307 ABCA8O94911 1581 aa13.45□□□□□ -0.26
LSM3P5-201ENST00000566307 TTBK1Q5TCY1 1321 aaPredicted RBP13.45□□□□□ -0.26
LSM3P5-201ENST00000566307 SUPT6HQ7KZ85 1726 aaKnown RBP13.45□□□□□ -0.26
LSM3P5-201ENST00000566307 ZEB1P37275 1124 aaPredicted RBP13.44□□□□□ -0.26
LSM3P5-201ENST00000566307 PRG4Q92954 1404 aaPredicted RBP13.44□□□□□ -0.26
LSM3P5-201ENST00000566307 PHLDB1Q86UU1 1377 aa13.44□□□□□ -0.26
LSM3P5-201ENST00000566307 CNKSR2Q8WXI2 1034 aa13.43□□□□□ -0.26
LSM3P5-201ENST00000566307 MAGI3Q5TCQ9 1506 aa13.42□□□□□ -0.26
LSM3P5-201ENST00000566307 NCOA2Q15596 1464 aa13.42□□□□□ -0.26
LSM3P5-201ENST00000566307 ATP1B4Q9UN42 357 aaPredicted RBP13.4□□□□□ -0.26
LSM3P5-201ENST00000566307 MYOM3Q5VTT5 1437 aa13.39□□□□□ -0.27
LSM3P5-201ENST00000566307 CACNB1Q02641 598 aaPredicted RBP13.39□□□□□ -0.27
LSM3P5-201ENST00000566307 CDK13Q14004 1512 aaKnown RBP13.39□□□□□ -0.27
LSM3P5-201ENST00000566307 PTPRGP23470 1445 aa13.39□□□□□ -0.27
LSM3P5-201ENST00000566307 FGD6Q6ZV73 1430 aa13.39□□□□□ -0.27
LSM3P5-201ENST00000566307 PLB1Q6P1J6 1458 aa13.38□□□□□ -0.27
LSM3P5-201ENST00000566307 CDK11AQ9UQ88 783 aaPredicted RBP13.38□□□□□ -0.27
LSM3P5-201ENST00000566307 ADCY10Q96PN6 1610 aa13.38□□□□□ -0.27
LSM3P5-201ENST00000566307 MIA2Q96PC5 1412 aa13.37□□□□□ -0.27
LSM3P5-201ENST00000566307 TCOF1Q13428 1488 aaKnown RBP13.36□□□□□ -0.27
LSM3P5-201ENST00000566307 TROQ12816 1431 aaPredicted RBP13.36□□□□□ -0.27
LSM3P5-201ENST00000566307 UACAQ9BZF9 1416 aa13.34□□□□□ -0.27
LSM3P5-201ENST00000566307 RNF216Q9NWF9 866 aaPredicted RBP13.34□□□□□ -0.27
LSM3P5-201ENST00000566307 UHRF1BP1LA0JNW5 1464 aa13.34□□□□□ -0.27
LSM3P5-201ENST00000566307 ATP10BO94823 1461 aa13.32□□□□□ -0.28
LSM3P5-201ENST00000566307 ABCC2Q92887 1545 aa13.32□□□□□ -0.28
LSM3P5-201ENST00000566307 HNRNPUL2Q1KMD3 747 aaKnown RBP13.31□□□□□ -0.28
LSM3P5-201ENST00000566307 PTPN23Q9H3S7 1636 aa13.3□□□□□ -0.28
LSM3P5-201ENST00000566307 ERCC6L2Q5T890 1561 aa13.29□□□□□ -0.28
LSM3P5-201ENST00000566307 CLSPNQ9HAW4 1339 aa13.29□□□□□ -0.28
LSM3P5-201ENST00000566307 ITSN2Q9NZM3 1697 aa13.28□□□□□ -0.28
LSM3P5-201ENST00000566307 AKNAQ7Z591 1439 aa13.27□□□□□ -0.29
LSM3P5-201ENST00000566307 KIF14Q15058 1648 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms