RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 SHROOM2Q13796 1616 aa17.6■□□□□ 0.41
SMPD3-206ENST00000566009 NUP160Q12769 1436 aa17.59■□□□□ 0.41
SMPD3-206ENST00000566009 PBRM1Q86U86 1689 aa17.58■□□□□ 0.41
SMPD3-206ENST00000566009 GRIN2AQ12879 1464 aa17.58■□□□□ 0.41
SMPD3-206ENST00000566009 PRG4Q92954 1404 aaPredicted RBP17.55■□□□□ 0.4
SMPD3-206ENST00000566009 JPH4Q96JJ6 628 aa17.48■□□□□ 0.39
SMPD3-206ENST00000566009 COL17A1Q9UMD9 1497 aaPredicted RBP17.46■□□□□ 0.39
SMPD3-206ENST00000566009 ADCY10Q96PN6 1610 aa17.45■□□□□ 0.38
SMPD3-206ENST00000566009 CUX1P39880 1505 aa17.43■□□□□ 0.38
SMPD3-206ENST00000566009 TOP2BQ02880 1626 aa17.42■□□□□ 0.38
SMPD3-206ENST00000566009 ABCA5Q8WWZ7 1642 aa17.42■□□□□ 0.38
SMPD3-206ENST00000566009 PPRC1Q5VV67 1664 aaKnown RBP17.39■□□□□ 0.37
SMPD3-206ENST00000566009 ABCA10Q8WWZ4 1543 aa17.37■□□□□ 0.37
SMPD3-206ENST00000566009 ADAMTS12P58397 1594 aa17.37■□□□□ 0.37
SMPD3-206ENST00000566009 CERKQ8TCT0 537 aa17.36■□□□□ 0.37
SMPD3-206ENST00000566009 FHAD1B1AJZ9 1412 aa17.34■□□□□ 0.37
SMPD3-206ENST00000566009 SPATA31D1Q6ZQQ2 1576 aa17.3■□□□□ 0.36
SMPD3-206ENST00000566009 GLI2P10070 1586 aa17.29■□□□□ 0.36
SMPD3-206ENST00000566009 ASXL2Q76L83 1435 aa17.23■□□□□ 0.35
SMPD3-206ENST00000566009 PLB1Q6P1J6 1458 aa17.22■□□□□ 0.35
SMPD3-206ENST00000566009 PTPRMP28827 1452 aa17.2■□□□□ 0.34
SMPD3-206ENST00000566009 TEX14Q8IWB6 1497 aa17.2■□□□□ 0.34
SMPD3-206ENST00000566009 PCF11O94913 1555 aaKnown RBP17.19■□□□□ 0.34
SMPD3-206ENST00000566009 RUSC2Q8N2Y8 1516 aa17.16■□□□□ 0.34
SMPD3-206ENST00000566009 ABCC2Q92887 1545 aa17.14■□□□□ 0.33
SMPD3-206ENST00000566009 MAP3K4Q9Y6R4 1608 aa17.14■□□□□ 0.33
SMPD3-206ENST00000566009 PTPRGP23470 1445 aa17.13■□□□□ 0.33
SMPD3-206ENST00000566009 HSPA2P54652 639 aa17.12■□□□□ 0.33
SMPD3-206ENST00000566009 ERICH3Q5RHP9 1530 aa17.11■□□□□ 0.33
SMPD3-206ENST00000566009 TTBK1Q5TCY1 1321 aaPredicted RBP17.11■□□□□ 0.33
SMPD3-206ENST00000566009 EPRSP07814 1512 aaKnown RBP17.11■□□□□ 0.33
SMPD3-206ENST00000566009 KIF21BO75037 1637 aa17.1■□□□□ 0.33
SMPD3-206ENST00000566009 WRNQ14191 1432 aaPredicted RBP eCLIP17.09■□□□□ 0.33
SMPD3-206ENST00000566009 ADAMTSL3P82987 1691 aa17.06■□□□□ 0.32
SMPD3-206ENST00000566009 CUL7Q14999 1698 aa17.03■□□□□ 0.32
SMPD3-206ENST00000566009 KIAA0586Q9BVV6 1533 aa17.02■□□□□ 0.32
SMPD3-206ENST00000566009 UHRF1BP1LA0JNW5 1464 aa16.98■□□□□ 0.31
SMPD3-206ENST00000566009 TNIKQ9UKE5 1360 aa16.97■□□□□ 0.31
SMPD3-206ENST00000566009 UACAQ9BZF9 1416 aa16.93■□□□□ 0.3
SMPD3-206ENST00000566009 MAGI3Q5TCQ9 1506 aa16.92■□□□□ 0.3
SMPD3-206ENST00000566009 MADDQ8WXG6 1647 aa16.92■□□□□ 0.3
SMPD3-206ENST00000566009 KDM5BQ9UGL1 1544 aa16.91■□□□□ 0.3
SMPD3-206ENST00000566009 CD109Q6YHK3 1445 aa16.91■□□□□ 0.3
SMPD3-206ENST00000566009 BCORL1Q5H9F3 1711 aa16.88■□□□□ 0.29
SMPD3-206ENST00000566009 PLPPR3Q6T4P5 718 aa16.88■□□□□ 0.29
SMPD3-206ENST00000566009 ARID4BQ4LE39 1312 aaPredicted RBP16.88■□□□□ 0.29
SMPD3-206ENST00000566009 CARMIL2Q6F5E8 1435 aa16.87■□□□□ 0.29
SMPD3-206ENST00000566009 WDR7Q9Y4E6 1490 aa16.84■□□□□ 0.29
SMPD3-206ENST00000566009 ZCCHC11Q5TAX3 1644 aaKnown RBP16.83■□□□□ 0.28
SMPD3-206ENST00000566009 ARAP3Q8WWN8 1544 aa16.82■□□□□ 0.28
SMPD3-206ENST00000566009 DMRT2Q9Y5R5 561 aa16.82■□□□□ 0.28
SMPD3-206ENST00000566009 RIMS1Q86UR5 1692 aaKnown RBP16.81■□□□□ 0.28
SMPD3-206ENST00000566009 KCNH8Q96L42 1107 aa16.81■□□□□ 0.28
SMPD3-206ENST00000566009 CFAP43Q8NDM7 1665 aa16.79■□□□□ 0.28
SMPD3-206ENST00000566009 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
SMPD3-206ENST00000566009 YEATS2Q9ULM3 1422 aa16.78■□□□□ 0.28
SMPD3-206ENST00000566009 RAPGEF3O95398 923 aa16.76■□□□□ 0.27
SMPD3-206ENST00000566009 IQSEC2Q5JU85 1478 aa16.7■□□□□ 0.26
SMPD3-206ENST00000566009 STRCQ7RTU9 1775 aa16.69■□□□□ 0.26
SMPD3-206ENST00000566009 IGF1RP08069 1367 aa16.68■□□□□ 0.26
SMPD3-206ENST00000566009 DISP1Q96F81 1524 aa16.68■□□□□ 0.26
SMPD3-206ENST00000566009 LTBP4Q8N2S1 1624 aa16.67■□□□□ 0.26
SMPD3-206ENST00000566009 PHLDB1Q86UU1 1377 aa16.67■□□□□ 0.26
SMPD3-206ENST00000566009 MED1Q15648 1581 aaPredicted RBP16.64■□□□□ 0.25
SMPD3-206ENST00000566009 PTPRTO14522 1441 aa16.64■□□□□ 0.25
SMPD3-206ENST00000566009 UBAP1LF5GYI3 381 aa16.64■□□□□ 0.25
SMPD3-206ENST00000566009 IQGAP2Q13576 1575 aa16.61■□□□□ 0.25
SMPD3-206ENST00000566009 POGZQ7Z3K3 1410 aa16.6■□□□□ 0.25
SMPD3-206ENST00000566009 PHF23Q9BUL5 403 aaPredicted RBP16.59■□□□□ 0.25
SMPD3-206ENST00000566009 MLECQ14165 292 aa16.58■□□□□ 0.24
SMPD3-206ENST00000566009 PREX1Q8TCU6 1659 aa16.58■□□□□ 0.24
SMPD3-206ENST00000566009 FRMPD1Q5SYB0 1578 aa16.57■□□□□ 0.24
SMPD3-206ENST00000566009 CEBPAP49715 358 aaPredicted RBP16.55■□□□□ 0.24
SMPD3-206ENST00000566009 HSPA1LP34931 641 aa16.54■□□□□ 0.24
SMPD3-206ENST00000566009 TTC37Q6PGP7 1564 aa16.54■□□□□ 0.24
SMPD3-206ENST00000566009 ARHGEF40Q8TER5 1519 aa16.54■□□□□ 0.24
SMPD3-206ENST00000566009 FANCAO15360 1455 aa16.54■□□□□ 0.24
SMPD3-206ENST00000566009 CARMIL1Q5VZK9 1371 aa16.53■□□□□ 0.24
SMPD3-206ENST00000566009 NEO1Q92859 1461 aa16.53■□□□□ 0.24
SMPD3-206ENST00000566009 UHRF1BP1Q6BDS2 1440 aa16.51■□□□□ 0.23
SMPD3-206ENST00000566009 FER1L4A9Z1Z3 1794 aa16.49■□□□□ 0.23
SMPD3-206ENST00000566009 UGGT2Q9NYU1 1516 aa16.49■□□□□ 0.23
SMPD3-206ENST00000566009 AKNAQ7Z591 1439 aa16.48■□□□□ 0.23
SMPD3-206ENST00000566009 KIF27Q86VH2 1401 aa16.48■□□□□ 0.23
SMPD3-206ENST00000566009 KIAA0556O60303 1618 aa16.48■□□□□ 0.23
SMPD3-206ENST00000566009 SIGLEC1Q9BZZ2 1709 aa16.47■□□□□ 0.23
SMPD3-206ENST00000566009 ABCA9Q8IUA7 1624 aa16.45■□□□□ 0.22
SMPD3-206ENST00000566009 ABCA8O94911 1581 aa16.43■□□□□ 0.22
SMPD3-206ENST00000566009 DENND4BO75064 1496 aaPredicted RBP16.43■□□□□ 0.22
SMPD3-206ENST00000566009 ZNF335Q9H4Z2 1342 aaPredicted RBP16.43■□□□□ 0.22
SMPD3-206ENST00000566009 SCAF1Q9H7N4 1312 aaKnown RBP16.43■□□□□ 0.22
SMPD3-206ENST00000566009 SETD1BQ9UPS6 1966 aaKnown RBP16.42■□□□□ 0.22
SMPD3-206ENST00000566009 PIP4K2BP78356 416 aa16.41■□□□□ 0.22
SMPD3-206ENST00000566009 FHOD3Q2V2M9 1422 aa16.4■□□□□ 0.22
SMPD3-206ENST00000566009 ARID3CA6NKF2 412 aa16.4■□□□□ 0.22
SMPD3-206ENST00000566009 ARHGEF12Q9NZN5 1544 aa16.4■□□□□ 0.22
SMPD3-206ENST00000566009 RICTORQ6R327 1708 aa16.38■□□□□ 0.21
SMPD3-206ENST00000566009 NCOA1Q15788 1441 aa16.37■□□□□ 0.21
SMPD3-206ENST00000566009 ZFYVE16Q7Z3T8 1539 aa16.36■□□□□ 0.21
SMPD3-206ENST00000566009 RGS17Q9UGC6 210 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms