RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 RIMBP3CA6NJZ7 1639 aa27.66■■■□□ 2.02
RNF40-206ENST00000564260 RIMBP3BA6NNM3 1639 aa27.66■■■□□ 2.02
RNF40-206ENST00000564260 RIMBP3Q9UFD9 1639 aa27.66■■■□□ 2.02
RNF40-206ENST00000564260 JPH4Q96JJ6 628 aa27.64■■■□□ 2.02
RNF40-206ENST00000564260 KIF21BO75037 1637 aa27.61■■■□□ 2.01
RNF40-206ENST00000564260 IQGAP2Q13576 1575 aa27.6■■■□□ 2.01
RNF40-206ENST00000564260 PRG4Q92954 1404 aaPredicted RBP27.55■■■□□ 2
RNF40-206ENST00000564260 FAM9AQ8IZU1 332 aaPredicted RBP27.54■■■□□ 2
RNF40-206ENST00000564260 ARAP1Q96P48 1450 aa27.51■■■□□ 2
RNF40-206ENST00000564260 UGGT2Q9NYU1 1516 aa27.51■■□□□ 1.99
RNF40-206ENST00000564260 CTTNBP2Q8WZ74 1663 aa27.5■■□□□ 1.99
RNF40-206ENST00000564260 CARMIL2Q6F5E8 1435 aa27.5■■□□□ 1.99
RNF40-206ENST00000564260 GOLGA3Q08378 1498 aa27.46■■□□□ 1.99
RNF40-206ENST00000564260 ERCC6L2Q5T890 1561 aa27.42■■□□□ 1.98
RNF40-206ENST00000564260 CYB5RLQ6IPT4 315 aa27.4■■□□□ 1.98
RNF40-206ENST00000564260 DISP1Q96F81 1524 aa27.36■■□□□ 1.97
RNF40-206ENST00000564260 TNIKQ9UKE5 1360 aa27.35■■□□□ 1.97
RNF40-206ENST00000564260 KIAA0556O60303 1618 aa27.31■■□□□ 1.96
RNF40-206ENST00000564260 PTPRGP23470 1445 aa27.28■■□□□ 1.96
RNF40-206ENST00000564260 UBTFP17480 764 aaKnown RBP27.28■■□□□ 1.96
RNF40-206ENST00000564260 SAMD9Q5K651 1589 aa27.23■■□□□ 1.95
RNF40-206ENST00000564260 EFCAB5A4FU69 1503 aa27.23■■□□□ 1.95
RNF40-206ENST00000564260 UHRF1BP1LA0JNW5 1464 aa27.16■■□□□ 1.94
RNF40-206ENST00000564260 UACAQ9BZF9 1416 aa27.13■■□□□ 1.93
RNF40-206ENST00000564260 ABCC2Q92887 1545 aa27.08■■□□□ 1.93
RNF40-206ENST00000564260 ADCY10Q96PN6 1610 aa27.07■■□□□ 1.92
RNF40-206ENST00000564260 NPM1P06748 294 aaKnown RBP eCLIP27.06■■□□□ 1.92
RNF40-206ENST00000564260 EHMT2Q96KQ7 1210 aa27.03■■□□□ 1.92
RNF40-206ENST00000564260 ABCA8O94911 1581 aa27.01■■□□□ 1.92
RNF40-206ENST00000564260 ARHGAP35Q9NRY4 1499 aa27■■□□□ 1.91
RNF40-206ENST00000564260 MAPKBP1O60336 1514 aa27■■□□□ 1.91
RNF40-206ENST00000564260 KDM5BQ9UGL1 1544 aa26.99■■□□□ 1.91
RNF40-206ENST00000564260 FHOD3Q2V2M9 1422 aa26.99■■□□□ 1.91
RNF40-206ENST00000564260 FMN1Q68DA7 1419 aa26.99■■□□□ 1.91
RNF40-206ENST00000564260 PLB1Q6P1J6 1458 aa26.98■■□□□ 1.91
RNF40-206ENST00000564260 P3H3Q8IVL6 736 aa26.97■■□□□ 1.91
RNF40-206ENST00000564260 TTBK1Q5TCY1 1321 aaPredicted RBP26.96■■□□□ 1.91
RNF40-206ENST00000564260 RANGAP1P46060 587 aaPredicted RBP26.95■■□□□ 1.9
RNF40-206ENST00000564260 CLIP1P30622 1438 aa26.94■■□□□ 1.9
RNF40-206ENST00000564260 RAPGEF6Q8TEU7 1601 aa26.89■■□□□ 1.9
RNF40-206ENST00000564260 CEP162Q5TB80 1403 aa26.85■■□□□ 1.89
RNF40-206ENST00000564260 ZCCHC11Q5TAX3 1644 aaKnown RBP26.82■■□□□ 1.88
RNF40-206ENST00000564260 LOC105371045A0A1W2PR82 267 aa26.81■■□□□ 1.88
RNF40-206ENST00000564260 NUP153P49790 1475 aaKnown RBP26.81■■□□□ 1.88
RNF40-206ENST00000564260 ASXL2Q76L83 1435 aa26.8■■□□□ 1.88
RNF40-206ENST00000564260 ABCC10Q5T3U5 1492 aa26.8■■□□□ 1.88
RNF40-206ENST00000564260 ATP10BO94823 1461 aa26.78■■□□□ 1.88
RNF40-206ENST00000564260 HECW1Q76N89 1606 aa26.76■■□□□ 1.87
RNF40-206ENST00000564260 TRHP20396 242 aaPredicted RBP26.75■■□□□ 1.87
RNF40-206ENST00000564260 CASKIN1Q8WXD9 1431 aa26.74■■□□□ 1.87
RNF40-206ENST00000564260 WDR7Q9Y4E6 1490 aa26.74■■□□□ 1.87
RNF40-206ENST00000564260 FYCO1Q9BQS8 1478 aa26.71■■□□□ 1.87
RNF40-206ENST00000564260 DIP2BQ9P265 1576 aa26.71■■□□□ 1.87
RNF40-206ENST00000564260 GLI2P10070 1586 aa26.7■■□□□ 1.86
RNF40-206ENST00000564260 CCDC18Q5T9S5 1454 aa26.67■■□□□ 1.86
RNF40-206ENST00000564260 EPRSP07814 1512 aaKnown RBP26.66■■□□□ 1.86
RNF40-206ENST00000564260 FAM69CQ0P6D2 419 aa26.64■■□□□ 1.86
RNF40-206ENST00000564260 CDK11AQ9UQ88 783 aaPredicted RBP26.64■■□□□ 1.86
RNF40-206ENST00000564260 PCF11O94913 1555 aaKnown RBP26.63■■□□□ 1.85
RNF40-206ENST00000564260 KIF13AQ9H1H9 1805 aa26.61■■□□□ 1.85
RNF40-206ENST00000564260 PLEKHD1A6NEE1 506 aa26.61■■□□□ 1.85
RNF40-206ENST00000564260 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.6■■□□□ 1.85
RNF40-206ENST00000564260 HNRNPUL2Q1KMD3 747 aaKnown RBP26.6■■□□□ 1.85
RNF40-206ENST00000564260 VPS8Q8N3P4 1428 aa26.57■■□□□ 1.84
RNF40-206ENST00000564260 ATP1B4Q9UN42 357 aaPredicted RBP26.55■■□□□ 1.84
RNF40-206ENST00000564260 CDK13Q14004 1512 aaKnown RBP26.55■■□□□ 1.84
RNF40-206ENST00000564260 ARID3CA6NKF2 412 aa26.54■■□□□ 1.84
RNF40-206ENST00000564260 MAP3K4Q9Y6R4 1608 aa26.5■■□□□ 1.83
RNF40-206ENST00000564260 CFAP43Q8NDM7 1665 aa26.49■■□□□ 1.83
RNF40-206ENST00000564260 TROQ12816 1431 aaPredicted RBP26.48■■□□□ 1.83
RNF40-206ENST00000564260 ABCA9Q8IUA7 1624 aa26.47■■□□□ 1.83
RNF40-206ENST00000564260 KCNH8Q96L42 1107 aa26.47■■□□□ 1.83
RNF40-206ENST00000564260 TEX14Q8IWB6 1497 aa26.47■■□□□ 1.83
RNF40-206ENST00000564260 MAGI3Q5TCQ9 1506 aa26.46■■□□□ 1.83
RNF40-206ENST00000564260 CD109Q6YHK3 1445 aa26.45■■□□□ 1.82
RNF40-206ENST00000564260 LRRIQ1Q96JM4 1722 aa26.44■■□□□ 1.82
RNF40-206ENST00000564260 MAP3K1Q13233 1512 aa26.42■■□□□ 1.82
RNF40-206ENST00000564260 PHLDB1Q86UU1 1377 aa26.39■■□□□ 1.82
RNF40-206ENST00000564260 KIF14Q15058 1648 aa26.39■■□□□ 1.81
RNF40-206ENST00000564260 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.36■■□□□ 1.81
RNF40-206ENST00000564260 PPRC1Q5VV67 1664 aaKnown RBP26.34■■□□□ 1.81
RNF40-206ENST00000564260 ARAP3Q8WWN8 1544 aa26.34■■□□□ 1.81
RNF40-206ENST00000564260 MTUS2Q5JR59 1369 aa26.33■■□□□ 1.8
RNF40-206ENST00000564260 EHBP1L1Q8N3D4 1523 aa26.32■■□□□ 1.8
RNF40-206ENST00000564260 TIAM1Q13009 1591 aa26.32■■□□□ 1.8
RNF40-206ENST00000564260 NEO1Q92859 1461 aa26.31■■□□□ 1.8
RNF40-206ENST00000564260 PLCH2O75038 1416 aa26.29■■□□□ 1.8
RNF40-206ENST00000564260 TTC37Q6PGP7 1564 aa26.28■■□□□ 1.8
RNF40-206ENST00000564260 TSPOAP1O95153 1857 aa26.28■■□□□ 1.8
RNF40-206ENST00000564260 CFAP74Q9C0B2 1584 aa26.26■■□□□ 1.79
RNF40-206ENST00000564260 APLP2Q06481 763 aa26.26■■□□□ 1.79
RNF40-206ENST00000564260 LRRC9Q6ZRR7 1453 aa26.23■■□□□ 1.79
RNF40-206ENST00000564260 KDM6BO15054 1643 aa26.21■■□□□ 1.79
RNF40-206ENST00000564260 FANCAO15360 1455 aa26.2■■□□□ 1.78
RNF40-206ENST00000564260 MYO5CQ9NQX4 1742 aa26.19■■□□□ 1.78
RNF40-206ENST00000564260 EFCAB2Q5VUJ9 269 aa26.18■■□□□ 1.78
RNF40-206ENST00000564260 AKNAQ7Z591 1439 aa26.14■■□□□ 1.78
RNF40-206ENST00000564260 PREX2Q70Z35 1606 aa26.14■■□□□ 1.78
RNF40-206ENST00000564260 SUPT6HQ7KZ85 1726 aaKnown RBP26.14■■□□□ 1.78
RNF40-206ENST00000564260 CCNB3Q8WWL7 1395 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms