RNA–Protein interactions for RNA: ENST00000563149.1

USB1-207, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2 BASIC

Gene USB1, Length 1,751 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-207ENST00000563149 ABCA10Q8WWZ4 1543 aa19.02■□□□□ 0.64
USB1-207ENST00000563149 RAB3GAP2Q9H2M9 1393 aa19.01■□□□□ 0.63
USB1-207ENST00000563149 EFCAB5A4FU69 1503 aa19.01■□□□□ 0.63
USB1-207ENST00000563149 SETD5Q9C0A6 1442 aa19■□□□□ 0.63
USB1-207ENST00000563149 CUL7Q14999 1698 aa18.99■□□□□ 0.63
USB1-207ENST00000563149 AQRO60306 1485 aaKnown RBP eCLIP18.98■□□□□ 0.63
USB1-207ENST00000563149 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.96■□□□□ 0.63
USB1-207ENST00000563149 PCF11O94913 1555 aaKnown RBP18.96■□□□□ 0.63
USB1-207ENST00000563149 MAPKBP1O60336 1514 aa18.96■□□□□ 0.63
USB1-207ENST00000563149 FYCO1Q9BQS8 1478 aa18.96■□□□□ 0.63
USB1-207ENST00000563149 TOPBP1Q92547 1522 aa18.95■□□□□ 0.62
USB1-207ENST00000563149 PHLDB1Q86UU1 1377 aa18.94■□□□□ 0.62
USB1-207ENST00000563149 POLA1P09884 1462 aaPredicted RBP18.93■□□□□ 0.62
USB1-207ENST00000563149 CASKIN1Q8WXD9 1431 aa18.92■□□□□ 0.62
USB1-207ENST00000563149 ITGAEP38570 1179 aa18.92■□□□□ 0.62
USB1-207ENST00000563149 CTTNBP2Q8WZ74 1663 aa18.92■□□□□ 0.62
USB1-207ENST00000563149 TIMELESSQ9UNS1 1208 aa18.91■□□□□ 0.62
USB1-207ENST00000563149 RAD54L2Q9Y4B4 1467 aa18.89■□□□□ 0.61
USB1-207ENST00000563149 FMN1Q68DA7 1419 aa18.86■□□□□ 0.61
USB1-207ENST00000563149 WDR97A6NE52 1622 aa18.85■□□□□ 0.61
USB1-207ENST00000563149 LAMC3Q9Y6N6 1575 aa18.85■□□□□ 0.61
USB1-207ENST00000563149 FHOD3Q2V2M9 1422 aa18.85■□□□□ 0.61
USB1-207ENST00000563149 FAM50AQ14320 339 aaKnown RBP18.83■□□□□ 0.6
USB1-207ENST00000563149 P3H3Q8IVL6 736 aa18.8■□□□□ 0.6
USB1-207ENST00000563149 NESP48681 1621 aa18.77■□□□□ 0.6
USB1-207ENST00000563149 SAMD9Q5K651 1589 aa18.77■□□□□ 0.6
USB1-207ENST00000563149 SNAPC4Q5SXM2 1469 aa18.77■□□□□ 0.6
USB1-207ENST00000563149 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.59
USB1-207ENST00000563149 MYT1Q01538 1121 aa18.76■□□□□ 0.59
USB1-207ENST00000563149 THOC2Q8NI27 1593 aaKnown RBP18.76■□□□□ 0.59
USB1-207ENST00000563149 ATP1B4Q9UN42 357 aaPredicted RBP18.76■□□□□ 0.59
USB1-207ENST00000563149 FGD6Q6ZV73 1430 aa18.75■□□□□ 0.59
USB1-207ENST00000563149 URB2Q14146 1524 aaKnown RBP18.75■□□□□ 0.59
USB1-207ENST00000563149 KIF21AQ7Z4S6 1674 aa18.7■□□□□ 0.58
USB1-207ENST00000563149 SIN3AQ96ST3 1273 aa18.7■□□□□ 0.58
USB1-207ENST00000563149 GAPVD1Q14C86 1478 aa18.7■□□□□ 0.58
USB1-207ENST00000563149 MTUS2Q5JR59 1369 aa18.69■□□□□ 0.58
USB1-207ENST00000563149 PDS5BQ9NTI5 1447 aa18.69■□□□□ 0.58
USB1-207ENST00000563149 PPP1R15AO75807 674 aaPredicted RBP18.68■□□□□ 0.58
USB1-207ENST00000563149 GRIN2BQ13224 1484 aa18.68■□□□□ 0.58
USB1-207ENST00000563149 HFM1A2PYH4 1435 aa18.67■□□□□ 0.58
USB1-207ENST00000563149 EHBP1L1Q8N3D4 1523 aa18.66■□□□□ 0.58
USB1-207ENST00000563149 SUPT16HQ9Y5B9 1047 aaKnown RBP18.65■□□□□ 0.58
USB1-207ENST00000563149 SUPT6HQ7KZ85 1726 aaKnown RBP18.65■□□□□ 0.58
USB1-207ENST00000563149 UACAQ9BZF9 1416 aa18.65■□□□□ 0.58
USB1-207ENST00000563149 CCDC18Q5T9S5 1454 aa18.65■□□□□ 0.58
USB1-207ENST00000563149 MYOM3Q5VTT5 1437 aa18.64■□□□□ 0.58
USB1-207ENST00000563149 LRRIQ1Q96JM4 1722 aa18.64■□□□□ 0.57
USB1-207ENST00000563149 PTPN23Q9H3S7 1636 aa18.63■□□□□ 0.57
USB1-207ENST00000563149 NCOA2Q15596 1464 aa18.63■□□□□ 0.57
USB1-207ENST00000563149 TDRD9Q8NDG6 1382 aaKnown RBP18.62■□□□□ 0.57
USB1-207ENST00000563149 ARHGEF11O15085 1522 aa18.6■□□□□ 0.57
USB1-207ENST00000563149 DDX10Q13206 875 aaKnown RBP18.58■□□□□ 0.57
USB1-207ENST00000563149 UGGT2Q9NYU1 1516 aa18.58■□□□□ 0.57
USB1-207ENST00000563149 PTPRKQ15262 1439 aa18.58■□□□□ 0.56
USB1-207ENST00000563149 TONSLQ96HA7 1378 aa18.58■□□□□ 0.56
USB1-207ENST00000563149 TARBP1Q13395 1621 aaKnown RBP18.58■□□□□ 0.56
USB1-207ENST00000563149 CCER2I3L3R5 266 aa18.58■□□□□ 0.56
USB1-207ENST00000563149 NAIPQ13075 1403 aa18.57■□□□□ 0.56
USB1-207ENST00000563149 TCOF1Q13428 1488 aaKnown RBP18.55■□□□□ 0.56
USB1-207ENST00000563149 HECW1Q76N89 1606 aa18.54■□□□□ 0.56
USB1-207ENST00000563149 AKNAQ7Z591 1439 aa18.52■□□□□ 0.56
USB1-207ENST00000563149 PBRM1Q86U86 1689 aa18.51■□□□□ 0.55
USB1-207ENST00000563149 ANP32CO43423 234 aa18.5■□□□□ 0.55
USB1-207ENST00000563149 KCNH8Q96L42 1107 aa18.5■□□□□ 0.55
USB1-207ENST00000563149 GCC2Q8IWJ2 1684 aa18.5■□□□□ 0.55
USB1-207ENST00000563149 IQGAP2Q13576 1575 aa18.48■□□□□ 0.55
USB1-207ENST00000563149 MIA2Q96PC5 1412 aa18.48■□□□□ 0.55
USB1-207ENST00000563149 MAGI3Q5TCQ9 1506 aa18.47■□□□□ 0.55
USB1-207ENST00000563149 ADAMTS12P58397 1594 aa18.45■□□□□ 0.54
USB1-207ENST00000563149 EPRSP07814 1512 aaKnown RBP18.44■□□□□ 0.54
USB1-207ENST00000563149 KDM5BQ9UGL1 1544 aa18.43■□□□□ 0.54
USB1-207ENST00000563149 WDR62O43379 1518 aa18.41■□□□□ 0.54
USB1-207ENST00000563149 MRC2Q9UBG0 1479 aa18.38■□□□□ 0.53
USB1-207ENST00000563149 HIRIP3Q9BW71 556 aaPredicted RBP18.37■□□□□ 0.53
USB1-207ENST00000563149 TSHZ2Q9NRE2 1034 aa18.34■□□□□ 0.53
USB1-207ENST00000563149 ROCK1Q13464 1354 aa18.34■□□□□ 0.53
USB1-207ENST00000563149 DENND4BO75064 1496 aaPredicted RBP18.34■□□□□ 0.53
USB1-207ENST00000563149 RRP7BPQ9NSQ0 103 aa18.33■□□□□ 0.53
USB1-207ENST00000563149 CDK13Q14004 1512 aaKnown RBP18.32■□□□□ 0.52
USB1-207ENST00000563149 NEFLP07196 543 aa18.32■□□□□ 0.52
USB1-207ENST00000563149 IFT140Q96RY7 1462 aa18.32■□□□□ 0.52
USB1-207ENST00000563149 FKBP8Q14318 412 aa18.31■□□□□ 0.52
USB1-207ENST00000563149 KIAA0586Q9BVV6 1533 aa18.3■□□□□ 0.52
USB1-207ENST00000563149 TRIM52Q96A61 297 aa18.3■□□□□ 0.52
USB1-207ENST00000563149 KDM6BO15054 1643 aa18.29■□□□□ 0.52
USB1-207ENST00000563149 MPHOSPH9Q99550 1183 aa18.29■□□□□ 0.52
USB1-207ENST00000563149 CHIC2Q9UKJ5 165 aa18.29■□□□□ 0.52
USB1-207ENST00000563149 KIAA0556O60303 1618 aa18.28■□□□□ 0.52
USB1-207ENST00000563149 DNAJC5BQ9UF47 199 aa18.28■□□□□ 0.52
USB1-207ENST00000563149 DNMT1P26358 1616 aaKnown RBP18.28■□□□□ 0.52
USB1-207ENST00000563149 EIF4G2P78344 907 aaKnown RBP eCLIP18.27■□□□□ 0.51
USB1-207ENST00000563149 DAPK1P53355 1430 aa18.27■□□□□ 0.51
USB1-207ENST00000563149 HSPA5P11021 654 aaKnown RBP18.26■□□□□ 0.51
USB1-207ENST00000563149 DISP1Q96F81 1524 aa18.24■□□□□ 0.51
USB1-207ENST00000563149 RAPGEF6Q8TEU7 1601 aa18.24■□□□□ 0.51
USB1-207ENST00000563149 CDK11AQ9UQ88 783 aaPredicted RBP18.23■□□□□ 0.51
USB1-207ENST00000563149 WASHC2AQ641Q2 1341 aa18.23■□□□□ 0.51
USB1-207ENST00000563149 RPRD2Q5VT52 1461 aaKnown RBP18.22■□□□□ 0.51
USB1-207ENST00000563149 ABCC5O15440 1437 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms