RNA–Protein interactions for RNA: ENST00000562310.1

COMMD4-205, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-205ENST00000562310 EFCAB5A4FU69 1503 aa22.63■■□□□ 1.21
COMMD4-205ENST00000562310 IQGAP2Q13576 1575 aa22.59■■□□□ 1.21
COMMD4-205ENST00000562310 ARHGAP35Q9NRY4 1499 aa22.59■■□□□ 1.21
COMMD4-205ENST00000562310 VPS8Q8N3P4 1428 aa22.57■■□□□ 1.2
COMMD4-205ENST00000562310 ARAP1Q96P48 1450 aa22.56■■□□□ 1.2
COMMD4-205ENST00000562310 SAMD9Q5K651 1589 aa22.54■■□□□ 1.2
COMMD4-205ENST00000562310 KIAA0586Q9BVV6 1533 aa22.53■■□□□ 1.2
COMMD4-205ENST00000562310 CHMP7Q8WUX9 453 aaPredicted RBP22.53■■□□□ 1.2
COMMD4-205ENST00000562310 CHD1O14646 1710 aa22.53■■□□□ 1.2
COMMD4-205ENST00000562310 CEP170Q5SW79 1584 aa22.51■■□□□ 1.19
COMMD4-205ENST00000562310 NUP160Q12769 1436 aa22.51■■□□□ 1.19
COMMD4-205ENST00000562310 RANGAP1P46060 587 aaPredicted RBP22.49■■□□□ 1.19
COMMD4-205ENST00000562310 UGGT2Q9NYU1 1516 aa22.48■■□□□ 1.19
COMMD4-205ENST00000562310 FBLN2P98095 1184 aa22.42■■□□□ 1.18
COMMD4-205ENST00000562310 FHOD3Q2V2M9 1422 aa22.37■■□□□ 1.17
COMMD4-205ENST00000562310 KIAA0556O60303 1618 aa22.36■■□□□ 1.17
COMMD4-205ENST00000562310 FMN1Q68DA7 1419 aa22.36■■□□□ 1.17
COMMD4-205ENST00000562310 PCF11O94913 1555 aaKnown RBP22.33■■□□□ 1.16
COMMD4-205ENST00000562310 FYCO1Q9BQS8 1478 aa22.32■■□□□ 1.16
COMMD4-205ENST00000562310 DISP1Q96F81 1524 aa22.31■■□□□ 1.16
COMMD4-205ENST00000562310 SHROOM2Q13796 1616 aa22.29■■□□□ 1.16
COMMD4-205ENST00000562310 MAP3K1Q13233 1512 aa22.28■■□□□ 1.16
COMMD4-205ENST00000562310 APLP2Q06481 763 aa22.28■■□□□ 1.16
COMMD4-205ENST00000562310 CASKIN1Q8WXD9 1431 aa22.28■■□□□ 1.16
COMMD4-205ENST00000562310 CARMIL2Q6F5E8 1435 aa22.27■■□□□ 1.16
COMMD4-205ENST00000562310 CFAP43Q8NDM7 1665 aa22.26■■□□□ 1.15
COMMD4-205ENST00000562310 CLASP1Q7Z460 1538 aa22.26■■□□□ 1.15
COMMD4-205ENST00000562310 P3H3Q8IVL6 736 aa22.26■■□□□ 1.15
COMMD4-205ENST00000562310 TIAM1Q13009 1591 aa22.22■■□□□ 1.15
COMMD4-205ENST00000562310 JPH4Q96JJ6 628 aa22.21■■□□□ 1.15
COMMD4-205ENST00000562310 HECW1Q76N89 1606 aa22.2■■□□□ 1.15
COMMD4-205ENST00000562310 TRIM26Q12899 539 aaPredicted RBP22.15■■□□□ 1.14
COMMD4-205ENST00000562310 PRG4Q92954 1404 aaPredicted RBP22.14■■□□□ 1.14
COMMD4-205ENST00000562310 CCDC18Q5T9S5 1454 aa22.14■■□□□ 1.13
COMMD4-205ENST00000562310 RAPGEF6Q8TEU7 1601 aa22.13■■□□□ 1.13
COMMD4-205ENST00000562310 LRRIQ1Q96JM4 1722 aa22.12■■□□□ 1.13
COMMD4-205ENST00000562310 PPARGC1BQ86YN6 1023 aaKnown RBP22.08■■□□□ 1.13
COMMD4-205ENST00000562310 LRRC9Q6ZRR7 1453 aa22.07■■□□□ 1.12
COMMD4-205ENST00000562310 ABCA8O94911 1581 aa22.04■■□□□ 1.12
COMMD4-205ENST00000562310 EPRSP07814 1512 aaKnown RBP22.03■■□□□ 1.12
COMMD4-205ENST00000562310 ATP1B4Q9UN42 357 aaPredicted RBP22.02■■□□□ 1.12
COMMD4-205ENST00000562310 EHBP1L1Q8N3D4 1523 aa22.01■■□□□ 1.11
COMMD4-205ENST00000562310 NUP153P49790 1475 aaKnown RBP22■■□□□ 1.11
COMMD4-205ENST00000562310 PTPRGP23470 1445 aa21.99■■□□□ 1.11
COMMD4-205ENST00000562310 OSCARQ8IYS5 282 aa21.99■■□□□ 1.11
COMMD4-205ENST00000562310 ERCC6L2Q5T890 1561 aa21.99■■□□□ 1.11
COMMD4-205ENST00000562310 KANK4Q5T7N3 995 aaPredicted RBP21.98■■□□□ 1.11
COMMD4-205ENST00000562310 PCGF6Q9BYE7 350 aa21.98■■□□□ 1.11
COMMD4-205ENST00000562310 PLB1Q6P1J6 1458 aa21.97■■□□□ 1.11
COMMD4-205ENST00000562310 TTBK1Q5TCY1 1321 aaPredicted RBP21.97■■□□□ 1.11
COMMD4-205ENST00000562310 SUPT6HQ7KZ85 1726 aaKnown RBP21.94■■□□□ 1.1
COMMD4-205ENST00000562310 CDK13Q14004 1512 aaKnown RBP21.94■■□□□ 1.1
COMMD4-205ENST00000562310 MTUS2Q5JR59 1369 aa21.93■■□□□ 1.1
COMMD4-205ENST00000562310 UACAQ9BZF9 1416 aa21.89■■□□□ 1.1
COMMD4-205ENST00000562310 ABCC2Q92887 1545 aa21.89■■□□□ 1.09
COMMD4-205ENST00000562310 MAGI3Q5TCQ9 1506 aa21.87■■□□□ 1.09
COMMD4-205ENST00000562310 UHRF1BP1LA0JNW5 1464 aa21.86■■□□□ 1.09
COMMD4-205ENST00000562310 RRBP1Q9P2E9 1410 aaKnown RBP21.86■■□□□ 1.09
COMMD4-205ENST00000562310 CDK11AQ9UQ88 783 aaPredicted RBP21.84■■□□□ 1.09
COMMD4-205ENST00000562310 ARHGEF11O15085 1522 aa21.83■■□□□ 1.09
COMMD4-205ENST00000562310 ADCY10Q96PN6 1610 aa21.83■■□□□ 1.08
COMMD4-205ENST00000562310 NCOA2Q15596 1464 aa21.82■■□□□ 1.08
COMMD4-205ENST00000562310 ATP10BO94823 1461 aa21.8■■□□□ 1.08
COMMD4-205ENST00000562310 TROQ12816 1431 aaPredicted RBP21.8■■□□□ 1.08
COMMD4-205ENST00000562310 PHLDB1Q86UU1 1377 aa21.78■■□□□ 1.08
COMMD4-205ENST00000562310 CCNB3Q8WWL7 1395 aa21.77■■□□□ 1.08
COMMD4-205ENST00000562310 MYOM3Q5VTT5 1437 aa21.74■■□□□ 1.07
COMMD4-205ENST00000562310 KIF14Q15058 1648 aa21.74■■□□□ 1.07
COMMD4-205ENST00000562310 ZCCHC11Q5TAX3 1644 aaKnown RBP21.74■■□□□ 1.07
COMMD4-205ENST00000562310 ARID3CA6NKF2 412 aa21.74■■□□□ 1.07
COMMD4-205ENST00000562310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.74■■□□□ 1.07
COMMD4-205ENST00000562310 HNRNPUL2Q1KMD3 747 aaKnown RBP21.74■■□□□ 1.07
COMMD4-205ENST00000562310 KDM5BQ9UGL1 1544 aa21.74■■□□□ 1.07
COMMD4-205ENST00000562310 ITSN2Q9NZM3 1697 aa21.72■■□□□ 1.07
COMMD4-205ENST00000562310 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.72■■□□□ 1.07
COMMD4-205ENST00000562310 FGD6Q6ZV73 1430 aa21.72■■□□□ 1.07
COMMD4-205ENST00000562310 PLEKHD1A6NEE1 506 aa21.68■■□□□ 1.06
COMMD4-205ENST00000562310 RIMBP3CA6NJZ7 1639 aa21.67■■□□□ 1.06
COMMD4-205ENST00000562310 RIMBP3BA6NNM3 1639 aa21.67■■□□□ 1.06
COMMD4-205ENST00000562310 RIMBP3Q9UFD9 1639 aa21.67■■□□□ 1.06
COMMD4-205ENST00000562310 MIA2Q96PC5 1412 aa21.66■■□□□ 1.06
COMMD4-205ENST00000562310 PTPN23Q9H3S7 1636 aa21.66■■□□□ 1.06
COMMD4-205ENST00000562310 TCOF1Q13428 1488 aaKnown RBP21.63■■□□□ 1.05
COMMD4-205ENST00000562310 ABCC10Q5T3U5 1492 aa21.61■■□□□ 1.05
COMMD4-205ENST00000562310 CDC42BPAQ5VT25 1732 aa21.6■■□□□ 1.05
COMMD4-205ENST00000562310 GPATCH8Q9UKJ3 1502 aaKnown RBP21.55■■□□□ 1.04
COMMD4-205ENST00000562310 PREX2Q70Z35 1606 aa21.55■■□□□ 1.04
COMMD4-205ENST00000562310 FAM50AQ14320 339 aaKnown RBP21.55■■□□□ 1.04
COMMD4-205ENST00000562310 MYO5CQ9NQX4 1742 aa21.54■■□□□ 1.04
COMMD4-205ENST00000562310 WDR7Q9Y4E6 1490 aa21.53■■□□□ 1.04
COMMD4-205ENST00000562310 TTC37Q6PGP7 1564 aa21.52■■□□□ 1.04
COMMD4-205ENST00000562310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.51■■□□□ 1.03
COMMD4-205ENST00000562310 DNMT1P26358 1616 aaKnown RBP21.48■■□□□ 1.03
COMMD4-205ENST00000562310 CAMSAP2Q08AD1 1489 aa21.48■■□□□ 1.03
COMMD4-205ENST00000562310 CDC42BPBQ9Y5S2 1711 aa21.47■■□□□ 1.03
COMMD4-205ENST00000562310 NPM1P06748 294 aaKnown RBP eCLIP21.47■■□□□ 1.03
COMMD4-205ENST00000562310 ASXL2Q76L83 1435 aa21.46■■□□□ 1.03
COMMD4-205ENST00000562310 CFDP1Q9UEE9 299 aaPredicted RBP21.45■■□□□ 1.02
COMMD4-205ENST00000562310 ARAP3Q8WWN8 1544 aa21.45■■□□□ 1.02
COMMD4-205ENST00000562310 ABCA9Q8IUA7 1624 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms