RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RAD54L2Q9Y4B4 1467 aa13.29□□□□□ -0.28
VPS39-205ENST00000562258 AQRO60306 1485 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS39-205ENST00000562258 YTHDC1Q96MU7 727 aaKnown RBP13.26□□□□□ -0.29
VPS39-205ENST00000562258 MLECQ14165 292 aa13.25□□□□□ -0.29
VPS39-205ENST00000562258 RUSC2Q8N2Y8 1516 aa13.24□□□□□ -0.29
VPS39-205ENST00000562258 TNIKQ9UKE5 1360 aa13.22□□□□□ -0.29
VPS39-205ENST00000562258 FGD5Q6ZNL6 1462 aa13.2□□□□□ -0.3
VPS39-205ENST00000562258 HRCP23327 699 aa13.2□□□□□ -0.3
VPS39-205ENST00000562258 CARMIL2Q6F5E8 1435 aa13.18□□□□□ -0.3
VPS39-205ENST00000562258 KDM2AQ9Y2K7 1162 aa13.16□□□□□ -0.3
VPS39-205ENST00000562258 CFTRP13569 1480 aa13.15□□□□□ -0.3
VPS39-205ENST00000562258 GAPVD1Q14C86 1478 aa13.14□□□□□ -0.31
VPS39-205ENST00000562258 IGF1RP08069 1367 aa13.12□□□□□ -0.31
VPS39-205ENST00000562258 KANK4Q5T7N3 995 aaPredicted RBP13.12□□□□□ -0.31
VPS39-205ENST00000562258 RGL3Q3MIN7 710 aa13.12□□□□□ -0.31
VPS39-205ENST00000562258 RAPGEF2Q9Y4G8 1499 aa13.11□□□□□ -0.31
VPS39-205ENST00000562258 FHOD3Q2V2M9 1422 aa13.1□□□□□ -0.31
VPS39-205ENST00000562258 UNC13AQ9UPW8 1703 aa13.1□□□□□ -0.31
VPS39-205ENST00000562258 GGT6Q6P531 493 aa13.09□□□□□ -0.31
VPS39-205ENST00000562258 PLEKHG5O94827 1062 aa13.09□□□□□ -0.31
VPS39-205ENST00000562258 CCNB3Q8WWL7 1395 aa13.08□□□□□ -0.32
VPS39-205ENST00000562258 HMGXB3Q12766 1538 aa13.07□□□□□ -0.32
VPS39-205ENST00000562258 PTPRGP23470 1445 aa13.07□□□□□ -0.32
VPS39-205ENST00000562258 MRC2Q9UBG0 1479 aa13.05□□□□□ -0.32
VPS39-205ENST00000562258 FHAD1B1AJZ9 1412 aa13.05□□□□□ -0.32
VPS39-205ENST00000562258 PPP1R15AO75807 674 aaPredicted RBP13.03□□□□□ -0.32
VPS39-205ENST00000562258 EFCAB2Q5VUJ9 269 aa13.02□□□□□ -0.32
VPS39-205ENST00000562258 FAM69CQ0P6D2 419 aa13.02□□□□□ -0.33
VPS39-205ENST00000562258 HNRNPMP52272 730 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS39-205ENST00000562258 TOPBP1Q92547 1522 aa13.01□□□□□ -0.33
VPS39-205ENST00000562258 TONSLQ96HA7 1378 aa13□□□□□ -0.33
VPS39-205ENST00000562258 HIRIP3Q9BW71 556 aaPredicted RBP12.99□□□□□ -0.33
VPS39-205ENST00000562258 POLA1P09884 1462 aaPredicted RBP12.99□□□□□ -0.33
VPS39-205ENST00000562258 C14orf37Q86TY3 774 aa12.98□□□□□ -0.33
VPS39-205ENST00000562258 GRIN2BQ13224 1484 aa12.96□□□□□ -0.34
VPS39-205ENST00000562258 FMN1Q68DA7 1419 aa12.95□□□□□ -0.34
VPS39-205ENST00000562258 SCAF1Q9H7N4 1312 aaKnown RBP12.94□□□□□ -0.34
VPS39-205ENST00000562258 SLC24A1O60721 1099 aa12.93□□□□□ -0.34
VPS39-205ENST00000562258 CENPBP07199 599 aaPredicted RBP12.93□□□□□ -0.34
VPS39-205ENST00000562258 VPS8Q8N3P4 1428 aa12.93□□□□□ -0.34
VPS39-205ENST00000562258 CUX1P39880 1505 aa12.92□□□□□ -0.34
VPS39-205ENST00000562258 KIF3BO15066 747 aa12.92□□□□□ -0.34
VPS39-205ENST00000562258 IFT140Q96RY7 1462 aa12.92□□□□□ -0.34
VPS39-205ENST00000562258 SYNJ1O43426 1573 aa12.91□□□□□ -0.34
VPS39-205ENST00000562258 FOXD1Q16676 465 aa12.91□□□□□ -0.34
VPS39-205ENST00000562258 DIEXFQ68CQ4 756 aaKnown RBP12.91□□□□□ -0.34
VPS39-205ENST00000562258 SIN3AQ96ST3 1273 aa12.9□□□□□ -0.34
VPS39-205ENST00000562258 PRG4Q92954 1404 aaPredicted RBP12.89□□□□□ -0.35
VPS39-205ENST00000562258 SNAPC4Q5SXM2 1469 aa12.89□□□□□ -0.35
VPS39-205ENST00000562258 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
VPS39-205ENST00000562258 LAMC3Q9Y6N6 1575 aa12.88□□□□□ -0.35
VPS39-205ENST00000562258 SPAG9O60271 1321 aaKnown RBP12.87□□□□□ -0.35
VPS39-205ENST00000562258 URB2Q14146 1524 aaKnown RBP12.84□□□□□ -0.35
VPS39-205ENST00000562258 ZNF644Q9H582 1327 aaPredicted RBP12.83□□□□□ -0.36
VPS39-205ENST00000562258 DDX10Q13206 875 aaKnown RBP12.82□□□□□ -0.36
VPS39-205ENST00000562258 ZBTB7CA1YPR0 619 aa12.82□□□□□ -0.36
VPS39-205ENST00000562258 NEFLP07196 543 aa12.82□□□□□ -0.36
VPS39-205ENST00000562258 NUTM2DQ5VT03 806 aaPredicted RBP12.82□□□□□ -0.36
VPS39-205ENST00000562258 PKD2Q13563 968 aa12.81□□□□□ -0.36
VPS39-205ENST00000562258 ANP32CO43423 234 aa12.81□□□□□ -0.36
VPS39-205ENST00000562258 SAFB2Q14151 953 aaKnown RBP eCLIP12.81□□□□□ -0.36
VPS39-205ENST00000562258 ARHGAP35Q9NRY4 1499 aa12.81□□□□□ -0.36
VPS39-205ENST00000562258 TMC1Q8TDI8 760 aa12.81□□□□□ -0.36
VPS39-205ENST00000562258 DNMBPQ6XZF7 1577 aa12.8□□□□□ -0.36
VPS39-205ENST00000562258 WASHC2CQ9Y4E1 1318 aa12.8□□□□□ -0.36
VPS39-205ENST00000562258 ZNF316A6NFI3 1004 aaPredicted RBP12.8□□□□□ -0.36
VPS39-205ENST00000562258 LMOD2Q6P5Q4 547 aa12.8□□□□□ -0.36
VPS39-205ENST00000562258 AFAP1Q8N556 730 aa12.8□□□□□ -0.36
VPS39-205ENST00000562258 DCAF11Q8TEB1 546 aa12.78□□□□□ -0.36
VPS39-205ENST00000562258 PELP1Q8IZL8 1130 aaKnown RBP12.77□□□□□ -0.36
VPS39-205ENST00000562258 NUP155O75694 1391 aa12.77□□□□□ -0.36
VPS39-205ENST00000562258 A0A0G2JS52 829 aa12.76□□□□□ -0.37
VPS39-205ENST00000562258 STK26Q9P289 416 aa12.76□□□□□ -0.37
VPS39-205ENST00000562258 PEG3Q9GZU2 1588 aa12.76□□□□□ -0.37
VPS39-205ENST00000562258 KANK1Q14678 1352 aa12.76□□□□□ -0.37
VPS39-205ENST00000562258 POGKQ9P215 609 aa12.75□□□□□ -0.37
VPS39-205ENST00000562258 CCDC18Q5T9S5 1454 aa12.75□□□□□ -0.37
VPS39-205ENST00000562258 TOP2BQ02880 1626 aa12.74□□□□□ -0.37
VPS39-205ENST00000562258 RAPGEF3O95398 923 aa12.74□□□□□ -0.37
VPS39-205ENST00000562258 SALL2Q9Y467 1007 aaPredicted RBP12.73□□□□□ -0.37
VPS39-205ENST00000562258 CARD11Q9BXL7 1154 aa12.72□□□□□ -0.37
VPS39-205ENST00000562258 HAP1P54257 671 aaPredicted RBP12.71□□□□□ -0.37
VPS39-205ENST00000562258 AEBP2Q6ZN18 517 aaPredicted RBP12.71□□□□□ -0.37
VPS39-205ENST00000562258 BCL11AQ9H165 835 aa12.71□□□□□ -0.37
VPS39-205ENST00000562258 ANKRD30AQ9BXX3 1397 aa12.71□□□□□ -0.37
VPS39-205ENST00000562258 NEFMP07197 916 aa12.71□□□□□ -0.38
VPS39-205ENST00000562258 ABCA10Q8WWZ4 1543 aa12.7□□□□□ -0.38
VPS39-205ENST00000562258 EIF4G2P78344 907 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS39-205ENST00000562258 PRDM2Q13029 1718 aa12.69□□□□□ -0.38
VPS39-205ENST00000562258 SENP3-EIF4A1A0A087X0R7 540 aa12.69□□□□□ -0.38
VPS39-205ENST00000562258 MPHOSPH9Q99550 1183 aa12.69□□□□□ -0.38
VPS39-205ENST00000562258 RSPH4AQ5TD94 716 aa12.69□□□□□ -0.38
VPS39-205ENST00000562258 PPM1GO15355 546 aaPredicted RBP12.67□□□□□ -0.38
VPS39-205ENST00000562258 PRXQ9BXM0 1461 aa12.67□□□□□ -0.38
VPS39-205ENST00000562258 SOX12O15370 315 aa12.67□□□□□ -0.38
VPS39-205ENST00000562258 SYNJ2O15056 1496 aa12.66□□□□□ -0.38
VPS39-205ENST00000562258 NUTM2FA1L443 756 aa12.66□□□□□ -0.38
VPS39-205ENST00000562258 ARAP1Q96P48 1450 aa12.65□□□□□ -0.38
VPS39-205ENST00000562258 HDGFP51858 240 aaKnown RBP12.65□□□□□ -0.38
VPS39-205ENST00000562258 FAM9BQ8IZU0 186 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms