RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 SYNJ2O15056 1496 aa18.13■□□□□ 0.49
SNX1-212ENST00000560861 CLIP1P30622 1438 aa18.12■□□□□ 0.49
SNX1-212ENST00000560861 GRIN2AQ12879 1464 aa18.11■□□□□ 0.49
SNX1-212ENST00000560861 ARHGAP35Q9NRY4 1499 aa18.05■□□□□ 0.48
SNX1-212ENST00000560861 ARAP1Q96P48 1450 aa18.03■□□□□ 0.48
SNX1-212ENST00000560861 NUP160Q12769 1436 aa18.03■□□□□ 0.48
SNX1-212ENST00000560861 CEP170Q5SW79 1584 aa18.03■□□□□ 0.48
SNX1-212ENST00000560861 CHD1O14646 1710 aa18.02■□□□□ 0.48
SNX1-212ENST00000560861 SAMD9Q5K651 1589 aa18.01■□□□□ 0.47
SNX1-212ENST00000560861 EFCAB5A4FU69 1503 aa18.01■□□□□ 0.47
SNX1-212ENST00000560861 IQGAP2Q13576 1575 aa18■□□□□ 0.47
SNX1-212ENST00000560861 KIAA0586Q9BVV6 1533 aa17.99■□□□□ 0.47
SNX1-212ENST00000560861 VPS8Q8N3P4 1428 aa17.97■□□□□ 0.47
SNX1-212ENST00000560861 CHMP7Q8WUX9 453 aaPredicted RBP17.96■□□□□ 0.47
SNX1-212ENST00000560861 UGGT2Q9NYU1 1516 aa17.96■□□□□ 0.47
SNX1-212ENST00000560861 RANGAP1P46060 587 aaPredicted RBP17.9■□□□□ 0.46
SNX1-212ENST00000560861 DISP1Q96F81 1524 aa17.87■□□□□ 0.45
SNX1-212ENST00000560861 FBLN2P98095 1184 aa17.86■□□□□ 0.45
SNX1-212ENST00000560861 FHOD3Q2V2M9 1422 aa17.86■□□□□ 0.45
SNX1-212ENST00000560861 KIAA0556O60303 1618 aa17.86■□□□□ 0.45
SNX1-212ENST00000560861 SHROOM2Q13796 1616 aa17.85■□□□□ 0.45
SNX1-212ENST00000560861 CLASP1Q7Z460 1538 aa17.85■□□□□ 0.45
SNX1-212ENST00000560861 PCF11O94913 1555 aaKnown RBP17.81■□□□□ 0.44
SNX1-212ENST00000560861 OSCARQ8IYS5 282 aa17.8■□□□□ 0.44
SNX1-212ENST00000560861 RIMBP3CA6NJZ7 1639 aa17.78■□□□□ 0.44
SNX1-212ENST00000560861 RIMBP3BA6NNM3 1639 aa17.78■□□□□ 0.44
SNX1-212ENST00000560861 RIMBP3Q9UFD9 1639 aa17.78■□□□□ 0.44
SNX1-212ENST00000560861 P3H3Q8IVL6 736 aa17.77■□□□□ 0.44
SNX1-212ENST00000560861 FMN1Q68DA7 1419 aa17.77■□□□□ 0.44
SNX1-212ENST00000560861 CASKIN1Q8WXD9 1431 aa17.77■□□□□ 0.44
SNX1-212ENST00000560861 FYCO1Q9BQS8 1478 aa17.76■□□□□ 0.43
SNX1-212ENST00000560861 JPH4Q96JJ6 628 aa17.76■□□□□ 0.43
SNX1-212ENST00000560861 MAP3K1Q13233 1512 aa17.75■□□□□ 0.43
SNX1-212ENST00000560861 CFAP43Q8NDM7 1665 aa17.73■□□□□ 0.43
SNX1-212ENST00000560861 LRRIQ1Q96JM4 1722 aa17.72■□□□□ 0.43
SNX1-212ENST00000560861 CARMIL2Q6F5E8 1435 aa17.71■□□□□ 0.43
SNX1-212ENST00000560861 TIAM1Q13009 1591 aa17.7■□□□□ 0.42
SNX1-212ENST00000560861 PRG4Q92954 1404 aaPredicted RBP17.7■□□□□ 0.42
SNX1-212ENST00000560861 ARHGEF11O15085 1522 aa17.68■□□□□ 0.42
SNX1-212ENST00000560861 ERCC6L2Q5T890 1561 aa17.67■□□□□ 0.42
SNX1-212ENST00000560861 HECW1Q76N89 1606 aa17.65■□□□□ 0.42
SNX1-212ENST00000560861 RAPGEF6Q8TEU7 1601 aa17.64■□□□□ 0.41
SNX1-212ENST00000560861 ABCA8O94911 1581 aa17.63■□□□□ 0.41
SNX1-212ENST00000560861 PPARGC1BQ86YN6 1023 aaKnown RBP17.61■□□□□ 0.41
SNX1-212ENST00000560861 NUP153P49790 1475 aaKnown RBP17.6■□□□□ 0.41
SNX1-212ENST00000560861 LRRC9Q6ZRR7 1453 aa17.59■□□□□ 0.41
SNX1-212ENST00000560861 APLP2Q06481 763 aa17.59■□□□□ 0.41
SNX1-212ENST00000560861 KANK4Q5T7N3 995 aaPredicted RBP17.59■□□□□ 0.41
SNX1-212ENST00000560861 EPRSP07814 1512 aaKnown RBP17.58■□□□□ 0.41
SNX1-212ENST00000560861 CCDC18Q5T9S5 1454 aa17.58■□□□□ 0.41
SNX1-212ENST00000560861 PLB1Q6P1J6 1458 aa17.57■□□□□ 0.4
SNX1-212ENST00000560861 PTPRGP23470 1445 aa17.55■□□□□ 0.4
SNX1-212ENST00000560861 TRIM26Q12899 539 aaPredicted RBP17.55■□□□□ 0.4
SNX1-212ENST00000560861 CDK13Q14004 1512 aaKnown RBP17.53■□□□□ 0.4
SNX1-212ENST00000560861 MAGI3Q5TCQ9 1506 aa17.53■□□□□ 0.4
SNX1-212ENST00000560861 EHBP1L1Q8N3D4 1523 aa17.51■□□□□ 0.39
SNX1-212ENST00000560861 UACAQ9BZF9 1416 aa17.48■□□□□ 0.39
SNX1-212ENST00000560861 ABCC2Q92887 1545 aa17.48■□□□□ 0.39
SNX1-212ENST00000560861 ATP1B4Q9UN42 357 aaPredicted RBP17.48■□□□□ 0.39
SNX1-212ENST00000560861 UHRF1BP1LA0JNW5 1464 aa17.47■□□□□ 0.39
SNX1-212ENST00000560861 TTBK1Q5TCY1 1321 aaPredicted RBP17.47■□□□□ 0.39
SNX1-212ENST00000560861 FOXD1Q16676 465 aa17.46■□□□□ 0.39
SNX1-212ENST00000560861 ATP10BO94823 1461 aa17.45■□□□□ 0.38
SNX1-212ENST00000560861 PCGF6Q9BYE7 350 aa17.44■□□□□ 0.38
SNX1-212ENST00000560861 SUPT6HQ7KZ85 1726 aaKnown RBP17.44■□□□□ 0.38
SNX1-212ENST00000560861 RRBP1Q9P2E9 1410 aaKnown RBP17.43■□□□□ 0.38
SNX1-212ENST00000560861 MTUS2Q5JR59 1369 aa17.41■□□□□ 0.38
SNX1-212ENST00000560861 ADCY10Q96PN6 1610 aa17.41■□□□□ 0.38
SNX1-212ENST00000560861 PHLDB1Q86UU1 1377 aa17.4■□□□□ 0.38
SNX1-212ENST00000560861 NCOA2Q15596 1464 aa17.4■□□□□ 0.38
SNX1-212ENST00000560861 CYB5RLQ6IPT4 315 aa17.39■□□□□ 0.37
SNX1-212ENST00000560861 TROQ12816 1431 aaPredicted RBP17.38■□□□□ 0.37
SNX1-212ENST00000560861 KDM5BQ9UGL1 1544 aa17.38■□□□□ 0.37
SNX1-212ENST00000560861 ZCCHC11Q5TAX3 1644 aaKnown RBP17.36■□□□□ 0.37
SNX1-212ENST00000560861 ARID3CA6NKF2 412 aa17.36■□□□□ 0.37
SNX1-212ENST00000560861 KIF14Q15058 1648 aa17.33■□□□□ 0.37
SNX1-212ENST00000560861 MYOM3Q5VTT5 1437 aa17.31■□□□□ 0.36
SNX1-212ENST00000560861 CCNB3Q8WWL7 1395 aa17.31■□□□□ 0.36
SNX1-212ENST00000560861 CDK11AQ9UQ88 783 aaPredicted RBP17.31■□□□□ 0.36
SNX1-212ENST00000560861 ABCC10Q5T3U5 1492 aa17.31■□□□□ 0.36
SNX1-212ENST00000560861 FGD6Q6ZV73 1430 aa17.3■□□□□ 0.36
SNX1-212ENST00000560861 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.28■□□□□ 0.36
SNX1-212ENST00000560861 TCOF1Q13428 1488 aaKnown RBP17.27■□□□□ 0.36
SNX1-212ENST00000560861 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.26■□□□□ 0.35
SNX1-212ENST00000560861 HNRNPUL2Q1KMD3 747 aaKnown RBP17.26■□□□□ 0.35
SNX1-212ENST00000560861 PLEKHD1A6NEE1 506 aa17.25■□□□□ 0.35
SNX1-212ENST00000560861 ITSN2Q9NZM3 1697 aa17.25■□□□□ 0.35
SNX1-212ENST00000560861 PTPN23Q9H3S7 1636 aa17.25■□□□□ 0.35
SNX1-212ENST00000560861 CDC42BPAQ5VT25 1732 aa17.24■□□□□ 0.35
SNX1-212ENST00000560861 MIA2Q96PC5 1412 aa17.24■□□□□ 0.35
SNX1-212ENST00000560861 GPATCH8Q9UKJ3 1502 aaKnown RBP17.23■□□□□ 0.35
SNX1-212ENST00000560861 TTC37Q6PGP7 1564 aa17.2■□□□□ 0.34
SNX1-212ENST00000560861 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.2■□□□□ 0.34
SNX1-212ENST00000560861 PREX2Q70Z35 1606 aa17.19■□□□□ 0.34
SNX1-212ENST00000560861 WDR7Q9Y4E6 1490 aa17.18■□□□□ 0.34
SNX1-212ENST00000560861 CDC42BPBQ9Y5S2 1711 aa17.17■□□□□ 0.34
SNX1-212ENST00000560861 ASXL2Q76L83 1435 aa17.15■□□□□ 0.34
SNX1-212ENST00000560861 MYO5CQ9NQX4 1742 aa17.14■□□□□ 0.33
SNX1-212ENST00000560861 ABCA9Q8IUA7 1624 aa17.14■□□□□ 0.33
SNX1-212ENST00000560861 TRHP20396 242 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms