RNA–Protein interactions for RNA: ENST00000560463.5

TRAF3-209, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-209ENST00000560463 CLIP1P30622 1438 aa13.73□□□□□ -0.21
TRAF3-209ENST00000560463 IQGAP2Q13576 1575 aa13.72□□□□□ -0.21
TRAF3-209ENST00000560463 EFCAB5A4FU69 1503 aa13.71□□□□□ -0.21
TRAF3-209ENST00000560463 SAMD9Q5K651 1589 aa13.68□□□□□ -0.22
TRAF3-209ENST00000560463 CEP170Q5SW79 1584 aa13.68□□□□□ -0.22
TRAF3-209ENST00000560463 CHMP7Q8WUX9 453 aaPredicted RBP13.68□□□□□ -0.22
TRAF3-209ENST00000560463 KIAA0586Q9BVV6 1533 aa13.67□□□□□ -0.22
TRAF3-209ENST00000560463 NUP160Q12769 1436 aa13.65□□□□□ -0.22
TRAF3-209ENST00000560463 ARHGAP35Q9NRY4 1499 aa13.65□□□□□ -0.22
TRAF3-209ENST00000560463 UGGT2Q9NYU1 1516 aa13.64□□□□□ -0.23
TRAF3-209ENST00000560463 ARAP1Q96P48 1450 aa13.62□□□□□ -0.23
TRAF3-209ENST00000560463 FBLN2P98095 1184 aa13.61□□□□□ -0.23
TRAF3-209ENST00000560463 VPS8Q8N3P4 1428 aa13.61□□□□□ -0.23
TRAF3-209ENST00000560463 KIAA0556O60303 1618 aa13.58□□□□□ -0.24
TRAF3-209ENST00000560463 SHROOM2Q13796 1616 aa13.58□□□□□ -0.24
TRAF3-209ENST00000560463 RANGAP1P46060 587 aaPredicted RBP13.58□□□□□ -0.24
TRAF3-209ENST00000560463 CLASP1Q7Z460 1538 aa13.54□□□□□ -0.24
TRAF3-209ENST00000560463 FMN1Q68DA7 1419 aa13.54□□□□□ -0.24
TRAF3-209ENST00000560463 DISP1Q96F81 1524 aa13.53□□□□□ -0.24
TRAF3-209ENST00000560463 LRRIQ1Q96JM4 1722 aa13.51□□□□□ -0.25
TRAF3-209ENST00000560463 CFAP43Q8NDM7 1665 aa13.51□□□□□ -0.25
TRAF3-209ENST00000560463 PCF11O94913 1555 aaKnown RBP13.51□□□□□ -0.25
TRAF3-209ENST00000560463 FHOD3Q2V2M9 1422 aa13.51□□□□□ -0.25
TRAF3-209ENST00000560463 CARMIL2Q6F5E8 1435 aa13.51□□□□□ -0.25
TRAF3-209ENST00000560463 FYCO1Q9BQS8 1478 aa13.49□□□□□ -0.25
TRAF3-209ENST00000560463 JPH4Q96JJ6 628 aa13.49□□□□□ -0.25
TRAF3-209ENST00000560463 MAP3K1Q13233 1512 aa13.49□□□□□ -0.25
TRAF3-209ENST00000560463 HECW1Q76N89 1606 aa13.47□□□□□ -0.25
TRAF3-209ENST00000560463 CASKIN1Q8WXD9 1431 aa13.47□□□□□ -0.25
TRAF3-209ENST00000560463 P3H3Q8IVL6 736 aa13.46□□□□□ -0.25
TRAF3-209ENST00000560463 RAPGEF6Q8TEU7 1601 aa13.46□□□□□ -0.26
TRAF3-209ENST00000560463 APLP2Q06481 763 aa13.45□□□□□ -0.26
TRAF3-209ENST00000560463 TIAM1Q13009 1591 aa13.45□□□□□ -0.26
TRAF3-209ENST00000560463 PRG4Q92954 1404 aaPredicted RBP13.43□□□□□ -0.26
TRAF3-209ENST00000560463 OSCARQ8IYS5 282 aa13.4□□□□□ -0.26
TRAF3-209ENST00000560463 CCDC18Q5T9S5 1454 aa13.4□□□□□ -0.26
TRAF3-209ENST00000560463 ABCA8O94911 1581 aa13.37□□□□□ -0.27
TRAF3-209ENST00000560463 ERCC6L2Q5T890 1561 aa13.37□□□□□ -0.27
TRAF3-209ENST00000560463 EPRSP07814 1512 aaKnown RBP13.34□□□□□ -0.27
TRAF3-209ENST00000560463 LRRC9Q6ZRR7 1453 aa13.34□□□□□ -0.27
TRAF3-209ENST00000560463 SUPT6HQ7KZ85 1726 aaKnown RBP13.33□□□□□ -0.27
TRAF3-209ENST00000560463 PTPRGP23470 1445 aa13.33□□□□□ -0.28
TRAF3-209ENST00000560463 NUP153P49790 1475 aaKnown RBP13.32□□□□□ -0.28
TRAF3-209ENST00000560463 TRIM26Q12899 539 aaPredicted RBP13.32□□□□□ -0.28
TRAF3-209ENST00000560463 ATP1B4Q9UN42 357 aaPredicted RBP13.32□□□□□ -0.28
TRAF3-209ENST00000560463 PLB1Q6P1J6 1458 aa13.31□□□□□ -0.28
TRAF3-209ENST00000560463 EHBP1L1Q8N3D4 1523 aa13.31□□□□□ -0.28
TRAF3-209ENST00000560463 PPARGC1BQ86YN6 1023 aaKnown RBP13.29□□□□□ -0.28
TRAF3-209ENST00000560463 ABCC2Q92887 1545 aa13.29□□□□□ -0.28
TRAF3-209ENST00000560463 UACAQ9BZF9 1416 aa13.28□□□□□ -0.28
TRAF3-209ENST00000560463 CDK13Q14004 1512 aaKnown RBP13.28□□□□□ -0.28
TRAF3-209ENST00000560463 ADCY10Q96PN6 1610 aa13.28□□□□□ -0.28
TRAF3-209ENST00000560463 KANK4Q5T7N3 995 aaPredicted RBP13.27□□□□□ -0.29
TRAF3-209ENST00000560463 UHRF1BP1LA0JNW5 1464 aa13.27□□□□□ -0.29
TRAF3-209ENST00000560463 TTBK1Q5TCY1 1321 aaPredicted RBP13.26□□□□□ -0.29
TRAF3-209ENST00000560463 ZCCHC11Q5TAX3 1644 aaKnown RBP13.25□□□□□ -0.29
TRAF3-209ENST00000560463 MTUS2Q5JR59 1369 aa13.25□□□□□ -0.29
TRAF3-209ENST00000560463 MAGI3Q5TCQ9 1506 aa13.24□□□□□ -0.29
TRAF3-209ENST00000560463 CDK11AQ9UQ88 783 aaPredicted RBP13.24□□□□□ -0.29
TRAF3-209ENST00000560463 ARHGEF11O15085 1522 aa13.23□□□□□ -0.29
TRAF3-209ENST00000560463 ATP10BO94823 1461 aa13.23□□□□□ -0.29
TRAF3-209ENST00000560463 ITSN2Q9NZM3 1697 aa13.22□□□□□ -0.29
TRAF3-209ENST00000560463 RIMBP3CA6NJZ7 1639 aa13.22□□□□□ -0.29
TRAF3-209ENST00000560463 RIMBP3BA6NNM3 1639 aa13.22□□□□□ -0.29
TRAF3-209ENST00000560463 RIMBP3Q9UFD9 1639 aa13.22□□□□□ -0.29
TRAF3-209ENST00000560463 KDM5BQ9UGL1 1544 aa13.2□□□□□ -0.3
TRAF3-209ENST00000560463 KIF14Q15058 1648 aa13.2□□□□□ -0.3
TRAF3-209ENST00000560463 NCOA2Q15596 1464 aa13.19□□□□□ -0.3
TRAF3-209ENST00000560463 PCGF6Q9BYE7 350 aa13.19□□□□□ -0.3
TRAF3-209ENST00000560463 CDC42BPAQ5VT25 1732 aa13.19□□□□□ -0.3
TRAF3-209ENST00000560463 TROQ12816 1431 aaPredicted RBP13.18□□□□□ -0.3
TRAF3-209ENST00000560463 RRBP1Q9P2E9 1410 aaKnown RBP13.18□□□□□ -0.3
TRAF3-209ENST00000560463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.17□□□□□ -0.3
TRAF3-209ENST00000560463 HNRNPUL2Q1KMD3 747 aaKnown RBP13.17□□□□□ -0.3
TRAF3-209ENST00000560463 MYO5CQ9NQX4 1742 aa13.16□□□□□ -0.3
TRAF3-209ENST00000560463 PLEKHD1A6NEE1 506 aa13.15□□□□□ -0.3
TRAF3-209ENST00000560463 MYOM3Q5VTT5 1437 aa13.14□□□□□ -0.31
TRAF3-209ENST00000560463 PHLDB1Q86UU1 1377 aa13.14□□□□□ -0.31
TRAF3-209ENST00000560463 PTPN23Q9H3S7 1636 aa13.13□□□□□ -0.31
TRAF3-209ENST00000560463 CDC42BPBQ9Y5S2 1711 aa13.13□□□□□ -0.31
TRAF3-209ENST00000560463 ARID3CA6NKF2 412 aa13.13□□□□□ -0.31
TRAF3-209ENST00000560463 CCNB3Q8WWL7 1395 aa13.12□□□□□ -0.31
TRAF3-209ENST00000560463 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.12□□□□□ -0.31
TRAF3-209ENST00000560463 PREX2Q70Z35 1606 aa13.11□□□□□ -0.31
TRAF3-209ENST00000560463 FGD6Q6ZV73 1430 aa13.11□□□□□ -0.31
TRAF3-209ENST00000560463 MIA2Q96PC5 1412 aa13.1□□□□□ -0.31
TRAF3-209ENST00000560463 ABCC10Q5T3U5 1492 aa13.09□□□□□ -0.31
TRAF3-209ENST00000560463 TCOF1Q13428 1488 aaKnown RBP13.07□□□□□ -0.32
TRAF3-209ENST00000560463 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.07□□□□□ -0.323e-14■■■■■ 27.4
TRAF3-209ENST00000560463 TTC37Q6PGP7 1564 aa13.07□□□□□ -0.32
TRAF3-209ENST00000560463 ABCA9Q8IUA7 1624 aa13.06□□□□□ -0.32
TRAF3-209ENST00000560463 WDR7Q9Y4E6 1490 aa13.06□□□□□ -0.32
TRAF3-209ENST00000560463 NPM1P06748 294 aaKnown RBP eCLIP13.06□□□□□ -0.32
TRAF3-209ENST00000560463 GPATCH8Q9UKJ3 1502 aaKnown RBP13.05□□□□□ -0.32
TRAF3-209ENST00000560463 CROCC2H7BZ55 1655 aa13.05□□□□□ -0.32
TRAF3-209ENST00000560463 MAPKBP1O60336 1514 aa13.04□□□□□ -0.32
TRAF3-209ENST00000560463 DNMT1P26358 1616 aaKnown RBP13.03□□□□□ -0.32
TRAF3-209ENST00000560463 ARAP3Q8WWN8 1544 aa13.03□□□□□ -0.32
TRAF3-209ENST00000560463 ADGBQ8N7X0 1667 aa13.02□□□□□ -0.32
TRAF3-209ENST00000560463 ASXL2Q76L83 1435 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms