RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 GOLGA3Q08378 1498 aa16.54■□□□□ 0.24
USP3-216ENST00000559873 CTTNBP2Q8WZ74 1663 aa16.53■□□□□ 0.24
USP3-216ENST00000559873 IQGAP2Q13576 1575 aa16.53■□□□□ 0.24
USP3-216ENST00000559873 SHROOM2Q13796 1616 aa16.52■□□□□ 0.23
USP3-216ENST00000559873 ARHGEF11O15085 1522 aa16.5■□□□□ 0.23
USP3-216ENST00000559873 JPH4Q96JJ6 628 aa16.45■□□□□ 0.22
USP3-216ENST00000559873 RIMBP3CA6NJZ7 1639 aa16.45■□□□□ 0.22
USP3-216ENST00000559873 RIMBP3BA6NNM3 1639 aa16.45■□□□□ 0.22
USP3-216ENST00000559873 RIMBP3Q9UFD9 1639 aa16.45■□□□□ 0.22
USP3-216ENST00000559873 PRG4Q92954 1404 aaPredicted RBP16.45■□□□□ 0.22
USP3-216ENST00000559873 UGGT2Q9NYU1 1516 aa16.44■□□□□ 0.22
USP3-216ENST00000559873 CARMIL2Q6F5E8 1435 aa16.44■□□□□ 0.22
USP3-216ENST00000559873 UBTFP17480 764 aaKnown RBP16.43■□□□□ 0.22
USP3-216ENST00000559873 EHMT2Q96KQ7 1210 aa16.38■□□□□ 0.21
USP3-216ENST00000559873 KIAA0556O60303 1618 aa16.37■□□□□ 0.21
USP3-216ENST00000559873 ERCC6L2Q5T890 1561 aa16.36■□□□□ 0.21
USP3-216ENST00000559873 ARAP1Q96P48 1450 aa16.35■□□□□ 0.21
USP3-216ENST00000559873 EFCAB5A4FU69 1503 aa16.35■□□□□ 0.21
USP3-216ENST00000559873 DISP1Q96F81 1524 aa16.35■□□□□ 0.21
USP3-216ENST00000559873 TNIKQ9UKE5 1360 aa16.33■□□□□ 0.2
USP3-216ENST00000559873 SAMD9Q5K651 1589 aa16.33■□□□□ 0.2
USP3-216ENST00000559873 PTPRGP23470 1445 aa16.28■□□□□ 0.2
USP3-216ENST00000559873 CYB5RLQ6IPT4 315 aa16.27■□□□□ 0.2
USP3-216ENST00000559873 RANGAP1P46060 587 aaPredicted RBP16.26■□□□□ 0.19
USP3-216ENST00000559873 CLIP1P30622 1438 aa16.22■□□□□ 0.19
USP3-216ENST00000559873 ARHGAP35Q9NRY4 1499 aa16.22■□□□□ 0.19
USP3-216ENST00000559873 TTBK1Q5TCY1 1321 aaPredicted RBP16.21■□□□□ 0.19
USP3-216ENST00000559873 FHOD3Q2V2M9 1422 aa16.21■□□□□ 0.19
USP3-216ENST00000559873 CEP162Q5TB80 1403 aa16.19■□□□□ 0.18
USP3-216ENST00000559873 UACAQ9BZF9 1416 aa16.19■□□□□ 0.18
USP3-216ENST00000559873 LOC105371045A0A1W2PR82 267 aa16.19■□□□□ 0.18
USP3-216ENST00000559873 P3H3Q8IVL6 736 aa16.19■□□□□ 0.18
USP3-216ENST00000559873 FMN1Q68DA7 1419 aa16.19■□□□□ 0.18
USP3-216ENST00000559873 ABCC2Q92887 1545 aa16.18■□□□□ 0.18
USP3-216ENST00000559873 UHRF1BP1LA0JNW5 1464 aa16.17■□□□□ 0.18
USP3-216ENST00000559873 ABCA8O94911 1581 aa16.15■□□□□ 0.18
USP3-216ENST00000559873 ADCY10Q96PN6 1610 aa16.15■□□□□ 0.18
USP3-216ENST00000559873 PLB1Q6P1J6 1458 aa16.14■□□□□ 0.17
USP3-216ENST00000559873 RAPGEF6Q8TEU7 1601 aa16.13■□□□□ 0.17
USP3-216ENST00000559873 NPM1P06748 294 aaKnown RBP eCLIP16.13■□□□□ 0.17
USP3-216ENST00000559873 HECW1Q76N89 1606 aa16.09■□□□□ 0.17
USP3-216ENST00000559873 KDM5BQ9UGL1 1544 aa16.08■□□□□ 0.16
USP3-216ENST00000559873 MAPKBP1O60336 1514 aa16.06■□□□□ 0.16
USP3-216ENST00000559873 CASKIN1Q8WXD9 1431 aa16.05■□□□□ 0.16
USP3-216ENST00000559873 ZCCHC11Q5TAX3 1644 aaKnown RBP16.05■□□□□ 0.16
USP3-216ENST00000559873 PCF11O94913 1555 aaKnown RBP16.04■□□□□ 0.16
USP3-216ENST00000559873 NUP153P49790 1475 aaKnown RBP16.04■□□□□ 0.16
USP3-216ENST00000559873 FYCO1Q9BQS8 1478 aa16.04■□□□□ 0.16
USP3-216ENST00000559873 CCDC18Q5T9S5 1454 aa16.01■□□□□ 0.15
USP3-216ENST00000559873 VPS8Q8N3P4 1428 aa16.01■□□□□ 0.15
USP3-216ENST00000559873 ATP1B4Q9UN42 357 aaPredicted RBP16■□□□□ 0.15
USP3-216ENST00000559873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.99■□□□□ 0.15
USP3-216ENST00000559873 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
USP3-216ENST00000559873 EPRSP07814 1512 aaKnown RBP15.99■□□□□ 0.15
USP3-216ENST00000559873 ATP10BO94823 1461 aa15.98■□□□□ 0.15
USP3-216ENST00000559873 ASXL2Q76L83 1435 aa15.98■□□□□ 0.15
USP3-216ENST00000559873 WDR7Q9Y4E6 1490 aa15.97■□□□□ 0.15
USP3-216ENST00000559873 ARID3CA6NKF2 412 aa15.96■□□□□ 0.15
USP3-216ENST00000559873 CDK11AQ9UQ88 783 aaPredicted RBP15.95■□□□□ 0.14
USP3-216ENST00000559873 CDK13Q14004 1512 aaKnown RBP15.94■□□□□ 0.14
USP3-216ENST00000559873 ABCC10Q5T3U5 1492 aa15.93■□□□□ 0.14
USP3-216ENST00000559873 DIP2BQ9P265 1576 aa15.92■□□□□ 0.14
USP3-216ENST00000559873 PLEKHD1A6NEE1 506 aa15.9■□□□□ 0.14
USP3-216ENST00000559873 TRHP20396 242 aaPredicted RBP15.9■□□□□ 0.14
USP3-216ENST00000559873 LRRIQ1Q96JM4 1722 aa15.88■□□□□ 0.13
USP3-216ENST00000559873 GLI2P10070 1586 aa15.88■□□□□ 0.13
USP3-216ENST00000559873 CFAP43Q8NDM7 1665 aa15.87■□□□□ 0.13
USP3-216ENST00000559873 TROQ12816 1431 aaPredicted RBP15.86■□□□□ 0.13
USP3-216ENST00000559873 APLP2Q06481 763 aa15.86■□□□□ 0.13
USP3-216ENST00000559873 FAM69CQ0P6D2 419 aa15.86■□□□□ 0.13
USP3-216ENST00000559873 TIAM1Q13009 1591 aa15.85■□□□□ 0.13
USP3-216ENST00000559873 KIF14Q15058 1648 aa15.85■□□□□ 0.13
USP3-216ENST00000559873 KIF13AQ9H1H9 1805 aa15.84■□□□□ 0.13
USP3-216ENST00000559873 MAP3K1Q13233 1512 aa15.84■□□□□ 0.13
USP3-216ENST00000559873 EHBP1L1Q8N3D4 1523 aa15.84■□□□□ 0.13
USP3-216ENST00000559873 KCNH8Q96L42 1107 aa15.83■□□□□ 0.12
USP3-216ENST00000559873 MTUS2Q5JR59 1369 aa15.83■□□□□ 0.12
USP3-216ENST00000559873 ABCA9Q8IUA7 1624 aa15.82■□□□□ 0.12
USP3-216ENST00000559873 MAP3K4Q9Y6R4 1608 aa15.79■□□□□ 0.12
USP3-216ENST00000559873 TEX14Q8IWB6 1497 aa15.78■□□□□ 0.12
USP3-216ENST00000559873 MAGI3Q5TCQ9 1506 aa15.78■□□□□ 0.12
USP3-216ENST00000559873 CD109Q6YHK3 1445 aa15.77■□□□□ 0.12
USP3-216ENST00000559873 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.77■□□□□ 0.112e-7■■■□□ 16.1
USP3-216ENST00000559873 LRRC9Q6ZRR7 1453 aa15.76■□□□□ 0.11
USP3-216ENST00000559873 TTC37Q6PGP7 1564 aa15.75■□□□□ 0.11
USP3-216ENST00000559873 SUPT6HQ7KZ85 1726 aaKnown RBP15.74■□□□□ 0.11
USP3-216ENST00000559873 MYO5CQ9NQX4 1742 aa15.73■□□□□ 0.11
USP3-216ENST00000559873 CFAP74Q9C0B2 1584 aa15.72■□□□□ 0.11
USP3-216ENST00000559873 ARAP3Q8WWN8 1544 aa15.72■□□□□ 0.11
USP3-216ENST00000559873 TSPOAP1O95153 1857 aa15.71■□□□□ 0.11
USP3-216ENST00000559873 NCOA2Q15596 1464 aa15.7■□□□□ 0.1
USP3-216ENST00000559873 PPRC1Q5VV67 1664 aaKnown RBP15.7■□□□□ 0.1
USP3-216ENST00000559873 PLCH2O75038 1416 aa15.69■□□□□ 0.1
USP3-216ENST00000559873 PHLDB1Q86UU1 1377 aa15.69■□□□□ 0.1
USP3-216ENST00000559873 CCNB3Q8WWL7 1395 aa15.69■□□□□ 0.1
USP3-216ENST00000559873 NEO1Q92859 1461 aa15.69■□□□□ 0.1
USP3-216ENST00000559873 PREX2Q70Z35 1606 aa15.68■□□□□ 0.1
USP3-216ENST00000559873 ITSN2Q9NZM3 1697 aa15.68■□□□□ 0.1
USP3-216ENST00000559873 ARHGAP5Q13017 1502 aa15.68■□□□□ 0.1
USP3-216ENST00000559873 FANCAO15360 1455 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms