RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 RIMBP3BA6NNM3 1639 aa17.71■□□□□ 0.43
USP3-207ENST00000558218 RIMBP3Q9UFD9 1639 aa17.71■□□□□ 0.43
USP3-207ENST00000558218 ARHGEF11O15085 1522 aa17.7■□□□□ 0.42
USP3-207ENST00000558218 ABCA5Q8WWZ7 1642 aa17.69■□□□□ 0.42
USP3-207ENST00000558218 SYNJ1O43426 1573 aa17.67■□□□□ 0.42
USP3-207ENST00000558218 PBRM1Q86U86 1689 aa17.65■□□□□ 0.42
USP3-207ENST00000558218 CYB5RLQ6IPT4 315 aa17.61■□□□□ 0.41
USP3-207ENST00000558218 CLASP1Q7Z460 1538 aa17.61■□□□□ 0.41
USP3-207ENST00000558218 ERICH3Q5RHP9 1530 aa17.58■□□□□ 0.41
USP3-207ENST00000558218 FHAD1B1AJZ9 1412 aa17.56■□□□□ 0.4
USP3-207ENST00000558218 GRIN2AQ12879 1464 aa17.55■□□□□ 0.4
USP3-207ENST00000558218 ARAP1Q96P48 1450 aa17.52■□□□□ 0.4
USP3-207ENST00000558218 ADAMTS12P58397 1594 aa17.52■□□□□ 0.39
USP3-207ENST00000558218 NUP160Q12769 1436 aa17.5■□□□□ 0.39
USP3-207ENST00000558218 KIF27Q86VH2 1401 aa17.46■□□□□ 0.39
USP3-207ENST00000558218 IGF1RP08069 1367 aa17.43■□□□□ 0.38
USP3-207ENST00000558218 CEP170Q5SW79 1584 aa17.42■□□□□ 0.38
USP3-207ENST00000558218 JPH4Q96JJ6 628 aa17.38■□□□□ 0.37
USP3-207ENST00000558218 SHROOM2Q13796 1616 aa17.37■□□□□ 0.37
USP3-207ENST00000558218 CUL7Q14999 1698 aa17.34■□□□□ 0.37
USP3-207ENST00000558218 TRHP20396 242 aaPredicted RBP17.32■□□□□ 0.36
USP3-207ENST00000558218 CARMIL1Q5VZK9 1371 aa17.31■□□□□ 0.36
USP3-207ENST00000558218 PRG4Q92954 1404 aaPredicted RBP17.3■□□□□ 0.36
USP3-207ENST00000558218 KIAA0586Q9BVV6 1533 aa17.3■□□□□ 0.36
USP3-207ENST00000558218 ERCC6L2Q5T890 1561 aa17.29■□□□□ 0.36
USP3-207ENST00000558218 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.26■□□□□ 0.35
USP3-207ENST00000558218 RUSC2Q8N2Y8 1516 aa17.26■□□□□ 0.35
USP3-207ENST00000558218 CACNB1Q02641 598 aaPredicted RBP17.21■□□□□ 0.35
USP3-207ENST00000558218 RNF39Q9H2S5 420 aa17.18■□□□□ 0.34
USP3-207ENST00000558218 RAPGEF2Q9Y4G8 1499 aa17.17■□□□□ 0.34
USP3-207ENST00000558218 NPM1P06748 294 aaKnown RBP eCLIP17.15■□□□□ 0.34
USP3-207ENST00000558218 CARMIL2Q6F5E8 1435 aa17.13■□□□□ 0.33
USP3-207ENST00000558218 SLC4A1APQ9BWU0 796 aaKnown RBP17.11■□□□□ 0.33
USP3-207ENST00000558218 PTPRGP23470 1445 aa17.1■□□□□ 0.33
USP3-207ENST00000558218 IQGAP2Q13576 1575 aa17.1■□□□□ 0.33
USP3-207ENST00000558218 TNIKQ9UKE5 1360 aa17.08■□□□□ 0.32
USP3-207ENST00000558218 SLC4A2P04920 1241 aa17.06■□□□□ 0.32
USP3-207ENST00000558218 PRXQ9BXM0 1461 aa17.05■□□□□ 0.32
USP3-207ENST00000558218 UGGT2Q9NYU1 1516 aa17.04■□□□□ 0.32
USP3-207ENST00000558218 MAPKBP1O60336 1514 aa17.03■□□□□ 0.32
USP3-207ENST00000558218 ADCY10Q96PN6 1610 aa17.02■□□□□ 0.31
USP3-207ENST00000558218 CSRNP3Q8WYN3 585 aa17.01■□□□□ 0.31
USP3-207ENST00000558218 DISP1Q96F81 1524 aa17.01■□□□□ 0.31
USP3-207ENST00000558218 EEA1Q15075 1411 aa16.99■□□□□ 0.31
USP3-207ENST00000558218 UHRF1BP1LA0JNW5 1464 aa16.99■□□□□ 0.31
USP3-207ENST00000558218 ABCC10Q5T3U5 1492 aa16.99■□□□□ 0.31
USP3-207ENST00000558218 FAM69CQ0P6D2 419 aa16.97■□□□□ 0.31
USP3-207ENST00000558218 UACAQ9BZF9 1416 aa16.96■□□□□ 0.31
USP3-207ENST00000558218 GOLGA3Q08378 1498 aa16.96■□□□□ 0.31
USP3-207ENST00000558218 KIF13AQ9H1H9 1805 aa16.96■□□□□ 0.3
USP3-207ENST00000558218 ABCC2Q92887 1545 aa16.96■□□□□ 0.3
USP3-207ENST00000558218 CTTNBP2Q8WZ74 1663 aa16.94■□□□□ 0.3
USP3-207ENST00000558218 U3KPZ7 1027 aaPredicted RBP16.94■□□□□ 0.3
USP3-207ENST00000558218 TTBK1Q5TCY1 1321 aaPredicted RBP16.94■□□□□ 0.3
USP3-207ENST00000558218 FAM9AQ8IZU1 332 aaPredicted RBP16.93■□□□□ 0.3
USP3-207ENST00000558218 KIAA0556O60303 1618 aa16.92■□□□□ 0.3
USP3-207ENST00000558218 PLB1Q6P1J6 1458 aa16.9■□□□□ 0.3
USP3-207ENST00000558218 C1QBPQ07021 282 aaKnown RBP16.89■□□□□ 0.29
USP3-207ENST00000558218 DIP2BQ9P265 1576 aa16.89■□□□□ 0.29
USP3-207ENST00000558218 KDM5BQ9UGL1 1544 aa16.88■□□□□ 0.29
USP3-207ENST00000558218 ASXL2Q76L83 1435 aa16.86■□□□□ 0.29
USP3-207ENST00000558218 GLI2P10070 1586 aa16.82■□□□□ 0.28
USP3-207ENST00000558218 ABCA8O94911 1581 aa16.78■□□□□ 0.28
USP3-207ENST00000558218 ZCCHC11Q5TAX3 1644 aaKnown RBP16.77■□□□□ 0.27
USP3-207ENST00000558218 EPRSP07814 1512 aaKnown RBP16.75■□□□□ 0.27
USP3-207ENST00000558218 KIF21BO75037 1637 aa16.75■□□□□ 0.27
USP3-207ENST00000558218 SAMD9Q5K651 1589 aa16.74■□□□□ 0.27
USP3-207ENST00000558218 P3H3Q8IVL6 736 aa16.74■□□□□ 0.27
USP3-207ENST00000558218 WDR7Q9Y4E6 1490 aa16.73■□□□□ 0.27
USP3-207ENST00000558218 TSPOAP1O95153 1857 aa16.72■□□□□ 0.27
USP3-207ENST00000558218 KDM6BO15054 1643 aa16.7■□□□□ 0.26
USP3-207ENST00000558218 TEX14Q8IWB6 1497 aa16.68■□□□□ 0.26
USP3-207ENST00000558218 MAP3K4Q9Y6R4 1608 aa16.68■□□□□ 0.26
USP3-207ENST00000558218 ATP10BO94823 1461 aa16.67■□□□□ 0.26
USP3-207ENST00000558218 UBTFP17480 764 aaKnown RBP16.66■□□□□ 0.26
USP3-207ENST00000558218 PPRC1Q5VV67 1664 aaKnown RBP16.65■□□□□ 0.26
USP3-207ENST00000558218 EFCAB5A4FU69 1503 aa16.65■□□□□ 0.26
USP3-207ENST00000558218 ZBTB22O15209 634 aa16.65■□□□□ 0.26
USP3-207ENST00000558218 KCNH8Q96L42 1107 aa16.65■□□□□ 0.26
USP3-207ENST00000558218 SPINK5Q9NQ38 1064 aaPredicted RBP16.64■□□□□ 0.25
USP3-207ENST00000558218 CD109Q6YHK3 1445 aa16.63■□□□□ 0.25
USP3-207ENST00000558218 FOXD4L1Q9NU39 408 aa16.63■□□□□ 0.25
USP3-207ENST00000558218 RAPGEF6Q8TEU7 1601 aa16.63■□□□□ 0.25
USP3-207ENST00000558218 MAGI3Q5TCQ9 1506 aa16.62■□□□□ 0.25
USP3-207ENST00000558218 RANGAP1P46060 587 aaPredicted RBP16.62■□□□□ 0.25
USP3-207ENST00000558218 CFAP43Q8NDM7 1665 aa16.61■□□□□ 0.25
USP3-207ENST00000558218 FHOD3Q2V2M9 1422 aa16.6■□□□□ 0.25
USP3-207ENST00000558218 PLEKHD1A6NEE1 506 aa16.58■□□□□ 0.24
USP3-207ENST00000558218 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.58■□□□□ 0.24
USP3-207ENST00000558218 HNRNPUL2Q1KMD3 747 aaKnown RBP16.58■□□□□ 0.24
USP3-207ENST00000558218 PHLDB1Q86UU1 1377 aa16.58■□□□□ 0.24
USP3-207ENST00000558218 NUP153P49790 1475 aaKnown RBP16.57■□□□□ 0.24
USP3-207ENST00000558218 ARID3CA6NKF2 412 aa16.57■□□□□ 0.24
USP3-207ENST00000558218 CAPN15O75808 1086 aa16.57■□□□□ 0.24
USP3-207ENST00000558218 COL17A1Q9UMD9 1497 aaPredicted RBP16.56■□□□□ 0.24
USP3-207ENST00000558218 FMN1Q68DA7 1419 aa16.54■□□□□ 0.24
USP3-207ENST00000558218 MYCNP04198 464 aaPredicted RBP16.54■□□□□ 0.24
USP3-207ENST00000558218 ABCA9Q8IUA7 1624 aa16.52■□□□□ 0.24
USP3-207ENST00000558218 ARAP3Q8WWN8 1544 aa16.5■□□□□ 0.23
USP3-207ENST00000558218 ARHGAP35Q9NRY4 1499 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms