RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 YTHDC1Q96MU7 727 aaKnown RBP23.86■■□□□ 1.41
SHMT2-232ENST00000557487 FGD5Q6ZNL6 1462 aa23.83■■□□□ 1.41
SHMT2-232ENST00000557487 TARBP1Q13395 1621 aaKnown RBP23.81■■□□□ 1.4
SHMT2-232ENST00000557487 KIF27Q86VH2 1401 aa23.81■■□□□ 1.4
SHMT2-232ENST00000557487 ZNF608Q9ULD9 1512 aaPredicted RBP23.78■■□□□ 1.4
SHMT2-232ENST00000557487 RAD54L2Q9Y4B4 1467 aa23.76■■□□□ 1.39
SHMT2-232ENST00000557487 MAP3K1Q13233 1512 aa23.68■■□□□ 1.38
SHMT2-232ENST00000557487 WDR97A6NE52 1622 aa23.68■■□□□ 1.38
SHMT2-232ENST00000557487 EIF4G3O43432 1585 aaKnown RBP23.67■■□□□ 1.38
SHMT2-232ENST00000557487 CCNB3Q8WWL7 1395 aa23.67■■□□□ 1.38
SHMT2-232ENST00000557487 AQRO60306 1485 aaKnown RBP eCLIP23.66■■□□□ 1.384e-7■■■■□ 22.4
SHMT2-232ENST00000557487 RANGAP1P46060 587 aaPredicted RBP23.66■■□□□ 1.38
SHMT2-232ENST00000557487 KANK4Q5T7N3 995 aaPredicted RBP23.66■■□□□ 1.38
SHMT2-232ENST00000557487 ABCA10Q8WWZ4 1543 aa23.65■■□□□ 1.38
SHMT2-232ENST00000557487 TDRD9Q8NDG6 1382 aaKnown RBP23.63■■□□□ 1.37
SHMT2-232ENST00000557487 ARHGAP35Q9NRY4 1499 aa23.63■■□□□ 1.37
SHMT2-232ENST00000557487 DNAJC5Q9H3Z4 198 aa23.61■■□□□ 1.37
SHMT2-232ENST00000557487 GRIN2BQ13224 1484 aa23.51■■□□□ 1.35
SHMT2-232ENST00000557487 GAPVD1Q14C86 1478 aa23.51■■□□□ 1.35
SHMT2-232ENST00000557487 ABCA5Q8WWZ7 1642 aa23.51■■□□□ 1.35
SHMT2-232ENST00000557487 TIAM1Q13009 1591 aa23.51■■□□□ 1.35
SHMT2-232ENST00000557487 OSCARQ8IYS5 282 aa23.45■■□□□ 1.35
SHMT2-232ENST00000557487 MAGI1Q96QZ7 1491 aaPredicted RBP23.45■■□□□ 1.34
SHMT2-232ENST00000557487 SNAPC4Q5SXM2 1469 aa23.44■■□□□ 1.34
SHMT2-232ENST00000557487 IGF1RP08069 1367 aa23.44■■□□□ 1.34
SHMT2-232ENST00000557487 RAB3GAP2Q9H2M9 1393 aa23.43■■□□□ 1.34
SHMT2-232ENST00000557487 SUPT16HQ9Y5B9 1047 aaKnown RBP23.42■■□□□ 1.34
SHMT2-232ENST00000557487 MAPKBP1O60336 1514 aa23.42■■□□□ 1.34
SHMT2-232ENST00000557487 FHAD1B1AJZ9 1412 aa23.41■■□□□ 1.34
SHMT2-232ENST00000557487 SETD5Q9C0A6 1442 aa23.41■■□□□ 1.34
SHMT2-232ENST00000557487 PBRM1Q86U86 1689 aa23.4■■□□□ 1.34
SHMT2-232ENST00000557487 TIMELESSQ9UNS1 1208 aa23.4■■□□□ 1.34
SHMT2-232ENST00000557487 LRRC9Q6ZRR7 1453 aa23.39■■□□□ 1.34
SHMT2-232ENST00000557487 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
SHMT2-232ENST00000557487 SYNJ2O15056 1496 aa23.35■■□□□ 1.33
SHMT2-232ENST00000557487 CFAP43Q8NDM7 1665 aa23.35■■□□□ 1.33
SHMT2-232ENST00000557487 CHD1O14646 1710 aa23.32■■□□□ 1.32
SHMT2-232ENST00000557487 CHMP7Q8WUX9 453 aaPredicted RBP23.32■■□□□ 1.32
SHMT2-232ENST00000557487 FBLN2P98095 1184 aa23.31■■□□□ 1.32
SHMT2-232ENST00000557487 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.31■■□□□ 1.32
SHMT2-232ENST00000557487 ADAMTS12P58397 1594 aa23.26■■□□□ 1.31
SHMT2-232ENST00000557487 PHLDB1Q86UU1 1377 aa23.25■■□□□ 1.31
SHMT2-232ENST00000557487 ITGAEP38570 1179 aa23.24■■□□□ 1.31
SHMT2-232ENST00000557487 EFCAB5A4FU69 1503 aa23.24■■□□□ 1.31
SHMT2-232ENST00000557487 FYCO1Q9BQS8 1478 aa23.22■■□□□ 1.31
SHMT2-232ENST00000557487 PCF11O94913 1555 aaKnown RBP23.2■■□□□ 1.3
SHMT2-232ENST00000557487 GRIN2AQ12879 1464 aa23.2■■□□□ 1.3
SHMT2-232ENST00000557487 CASKIN1Q8WXD9 1431 aa23.16■■□□□ 1.3
SHMT2-232ENST00000557487 CLASP1Q7Z460 1538 aa23.15■■□□□ 1.3
SHMT2-232ENST00000557487 NUP160Q12769 1436 aa23.13■■□□□ 1.29
SHMT2-232ENST00000557487 CCER2I3L3R5 266 aa23.13■■□□□ 1.29
SHMT2-232ENST00000557487 CUL7Q14999 1698 aa23.13■■□□□ 1.29
SHMT2-232ENST00000557487 FAM50AQ14320 339 aaKnown RBP23.11■■□□□ 1.29
SHMT2-232ENST00000557487 TSHZ2Q9NRE2 1034 aa23.11■■□□□ 1.29
SHMT2-232ENST00000557487 PPP1R15AO75807 674 aaPredicted RBP23.1■■□□□ 1.29
SHMT2-232ENST00000557487 CEP170Q5SW79 1584 aa23.07■■□□□ 1.28
SHMT2-232ENST00000557487 FMN1Q68DA7 1419 aa23.06■■□□□ 1.28
SHMT2-232ENST00000557487 ARHGEF11O15085 1522 aa23.04■■□□□ 1.28
SHMT2-232ENST00000557487 DDX10Q13206 875 aaKnown RBP23.04■■□□□ 1.28
SHMT2-232ENST00000557487 SIN3AQ96ST3 1273 aa23.04■■□□□ 1.28
SHMT2-232ENST00000557487 CTTNBP2Q8WZ74 1663 aa23.03■■□□□ 1.28
SHMT2-232ENST00000557487 RIMBP3CA6NJZ7 1639 aa23.01■■□□□ 1.27
SHMT2-232ENST00000557487 RIMBP3BA6NNM3 1639 aa23.01■■□□□ 1.27
SHMT2-232ENST00000557487 RIMBP3Q9UFD9 1639 aa23.01■■□□□ 1.27
SHMT2-232ENST00000557487 FHOD3Q2V2M9 1422 aa23.01■■□□□ 1.27
SHMT2-232ENST00000557487 FGD6Q6ZV73 1430 aa23.01■■□□□ 1.27
SHMT2-232ENST00000557487 KCNH8Q96L42 1107 aa23■■□□□ 1.27
SHMT2-232ENST00000557487 ANP32CO43423 234 aa22.98■■□□□ 1.27
SHMT2-232ENST00000557487 HFM1A2PYH4 1435 aa22.98■■□□□ 1.27
SHMT2-232ENST00000557487 UACAQ9BZF9 1416 aa22.97■■□□□ 1.27
SHMT2-232ENST00000557487 NEFLP07196 543 aa22.96■■□□□ 1.27
SHMT2-232ENST00000557487 CCDC18Q5T9S5 1454 aa22.94■■□□□ 1.26
SHMT2-232ENST00000557487 TONSLQ96HA7 1378 aa22.94■■□□□ 1.26
SHMT2-232ENST00000557487 KIAA0586Q9BVV6 1533 aa22.93■■□□□ 1.26
SHMT2-232ENST00000557487 SHROOM2Q13796 1616 aa22.92■■□□□ 1.26
SHMT2-232ENST00000557487 ANP32EQ9BTT0 268 aa22.91■■□□□ 1.26
SHMT2-232ENST00000557487 FKBP8Q14318 412 aa22.9■■□□□ 1.26
SHMT2-232ENST00000557487 PTPN23Q9H3S7 1636 aa22.9■■□□□ 1.26
SHMT2-232ENST00000557487 P3H3Q8IVL6 736 aa22.9■■□□□ 1.26
SHMT2-232ENST00000557487 ATP1B4Q9UN42 357 aaPredicted RBP22.89■■□□□ 1.25
SHMT2-232ENST00000557487 SAMD9Q5K651 1589 aa22.88■■□□□ 1.25
SHMT2-232ENST00000557487 JPH4Q96JJ6 628 aa22.88■■□□□ 1.25
SHMT2-232ENST00000557487 MTUS2Q5JR59 1369 aa22.88■■□□□ 1.25
SHMT2-232ENST00000557487 MYOM3Q5VTT5 1437 aa22.85■■□□□ 1.25
SHMT2-232ENST00000557487 EHBP1L1Q8N3D4 1523 aa22.84■■□□□ 1.25
SHMT2-232ENST00000557487 SUPT6HQ7KZ85 1726 aaKnown RBP22.82■■□□□ 1.24
SHMT2-232ENST00000557487 NAIPQ13075 1403 aa22.82■■□□□ 1.24
SHMT2-232ENST00000557487 CYB5RLQ6IPT4 315 aa22.81■■□□□ 1.24
SHMT2-232ENST00000557487 PRG4Q92954 1404 aaPredicted RBP22.81■■□□□ 1.24
SHMT2-232ENST00000557487 NCOA2Q15596 1464 aa22.8■■□□□ 1.24
SHMT2-232ENST00000557487 ERCC6L2Q5T890 1561 aa22.8■■□□□ 1.24
SHMT2-232ENST00000557487 PTPRKQ15262 1439 aa22.78■■□□□ 1.24
SHMT2-232ENST00000557487 AKNAQ7Z591 1439 aa22.77■■□□□ 1.24
SHMT2-232ENST00000557487 IQGAP2Q13576 1575 aa22.76■■□□□ 1.23
SHMT2-232ENST00000557487 BCANQ96GW7 911 aa22.74■■□□□ 1.23
SHMT2-232ENST00000557487 UGGT2Q9NYU1 1516 aa22.74■■□□□ 1.23
SHMT2-232ENST00000557487 TCOF1Q13428 1488 aaKnown RBP22.74■■□□□ 1.23
SHMT2-232ENST00000557487 KDM5BQ9UGL1 1544 aa22.73■■□□□ 1.23
SHMT2-232ENST00000557487 LRRIQ1Q96JM4 1722 aa22.72■■□□□ 1.23
SHMT2-232ENST00000557487 HECW1Q76N89 1606 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms