RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 ARAP1Q96P48 1450 aa10.99□□□□□ -0.65
VPS33B-207ENST00000557470 TARBP1Q13395 1621 aaKnown RBP10.98□□□□□ -0.65
VPS33B-207ENST00000557470 ZBTB22O15209 634 aa10.98□□□□□ -0.65
VPS33B-207ENST00000557470 APLP2Q06481 763 aa10.96□□□□□ -0.65
VPS33B-207ENST00000557470 POLA1P09884 1462 aaPredicted RBP10.95□□□□□ -0.66
VPS33B-207ENST00000557470 FBLN2P98095 1184 aa10.95□□□□□ -0.66
VPS33B-207ENST00000557470 ZNF219Q9P2Y4 722 aaPredicted RBP10.93□□□□□ -0.66
VPS33B-207ENST00000557470 ABCB7O75027 752 aa10.92□□□□□ -0.66
VPS33B-207ENST00000557470 RAD54L2Q9Y4B4 1467 aa10.92□□□□□ -0.66
VPS33B-207ENST00000557470 TDRD9Q8NDG6 1382 aaKnown RBP10.9□□□□□ -0.66
VPS33B-207ENST00000557470 SOGA1O94964 1423 aa10.89□□□□□ -0.67
VPS33B-207ENST00000557470 SNAPC4Q5SXM2 1469 aa10.88□□□□□ -0.67
VPS33B-207ENST00000557470 CLASP1Q7Z460 1538 aa10.88□□□□□ -0.67
VPS33B-207ENST00000557470 FGD5Q6ZNL6 1462 aa10.86□□□□□ -0.67
VPS33B-207ENST00000557470 ATF5Q9Y2D1 282 aaPredicted RBP10.85□□□□□ -0.67
VPS33B-207ENST00000557470 WDR97A6NE52 1622 aa10.84□□□□□ -0.67
VPS33B-207ENST00000557470 CHMP7Q8WUX9 453 aaPredicted RBP10.84□□□□□ -0.67
VPS33B-207ENST00000557470 MAGI1Q96QZ7 1491 aaPredicted RBP10.84□□□□□ -0.67
VPS33B-207ENST00000557470 SYNJ1O43426 1573 aa10.83□□□□□ -0.68
VPS33B-207ENST00000557470 EHMT2Q96KQ7 1210 aa10.83□□□□□ -0.68
VPS33B-207ENST00000557470 CUX1P39880 1505 aa10.83□□□□□ -0.68
VPS33B-207ENST00000557470 GRIN2BQ13224 1484 aa10.81□□□□□ -0.68
VPS33B-207ENST00000557470 SYNJ2O15056 1496 aa10.81□□□□□ -0.68
VPS33B-207ENST00000557470 GAPVD1Q14C86 1478 aa10.76□□□□□ -0.69
VPS33B-207ENST00000557470 POLA2Q14181 598 aa10.75□□□□□ -0.69
VPS33B-207ENST00000557470 PBRM1Q86U86 1689 aa10.75□□□□□ -0.69
VPS33B-207ENST00000557470 ABCA10Q8WWZ4 1543 aa10.73□□□□□ -0.69
VPS33B-207ENST00000557470 ABCA5Q8WWZ7 1642 aa10.73□□□□□ -0.69
VPS33B-207ENST00000557470 ERCC6L2Q5T890 1561 aa10.7□□□□□ -0.7
VPS33B-207ENST00000557470 SLC24A1O60721 1099 aa10.7□□□□□ -0.7
VPS33B-207ENST00000557470 GRIN2AQ12879 1464 aa10.68□□□□□ -0.7
VPS33B-207ENST00000557470 ADAMTS12P58397 1594 aa10.66□□□□□ -0.7
VPS33B-207ENST00000557470 CEP170Q5SW79 1584 aa10.66□□□□□ -0.7
VPS33B-207ENST00000557470 NUP160Q12769 1436 aa10.66□□□□□ -0.7
VPS33B-207ENST00000557470 WRNQ14191 1432 aaPredicted RBP eCLIP10.64□□□□□ -0.71
VPS33B-207ENST00000557470 SHROOM2Q13796 1616 aa10.62□□□□□ -0.71
VPS33B-207ENST00000557470 FHAD1B1AJZ9 1412 aa10.61□□□□□ -0.71
VPS33B-207ENST00000557470 ATXN8OSP0DMR3 200 aa10.61□□□□□ -0.71
VPS33B-207ENST00000557470 CSRNP3Q8WYN3 585 aa10.6□□□□□ -0.71
VPS33B-207ENST00000557470 TOP2BQ02880 1626 aa10.58□□□□□ -0.72
VPS33B-207ENST00000557470 BIVM-ERCC5R4GMW8 1640 aa10.58□□□□□ -0.72
VPS33B-207ENST00000557470 ERICH3Q5RHP9 1530 aa10.58□□□□□ -0.72
VPS33B-207ENST00000557470 PRG4Q92954 1404 aaPredicted RBP10.57□□□□□ -0.72
VPS33B-207ENST00000557470 KIF13AQ9H1H9 1805 aa10.56□□□□□ -0.72
VPS33B-207ENST00000557470 SUPT5HO00267 1087 aaKnown RBP10.56□□□□□ -0.72
VPS33B-207ENST00000557470 JPH4Q96JJ6 628 aa10.53□□□□□ -0.72
VPS33B-207ENST00000557470 ABCC10Q5T3U5 1492 aa10.51□□□□□ -0.73
VPS33B-207ENST00000557470 FAM69CQ0P6D2 419 aa10.51□□□□□ -0.73
VPS33B-207ENST00000557470 RUSC2Q8N2Y8 1516 aa10.51□□□□□ -0.73
VPS33B-207ENST00000557470 MAPKBP1O60336 1514 aa10.49□□□□□ -0.73
VPS33B-207ENST00000557470 ADCY10Q96PN6 1610 aa10.48□□□□□ -0.73
VPS33B-207ENST00000557470 DIP2BQ9P265 1576 aa10.48□□□□□ -0.73
VPS33B-207ENST00000557470 NPM1P06748 294 aaKnown RBP eCLIP10.46□□□□□ -0.73
VPS33B-207ENST00000557470 RBM42Q9BTD8 480 aaKnown RBP10.45□□□□□ -0.74
VPS33B-207ENST00000557470 ZBTB12Q9Y330 459 aaPredicted RBP10.45□□□□□ -0.74
VPS33B-207ENST00000557470 KDM6BO15054 1643 aa10.43□□□□□ -0.74
VPS33B-207ENST00000557470 KIAA0586Q9BVV6 1533 aa10.43□□□□□ -0.74
VPS33B-207ENST00000557470 KDM4FA0A1W2PPD8 638 aa10.42□□□□□ -0.74
VPS33B-207ENST00000557470 IGF1RP08069 1367 aa10.4□□□□□ -0.74
VPS33B-207ENST00000557470 TSPOAP1O95153 1857 aa10.39□□□□□ -0.75
VPS33B-207ENST00000557470 CUL7Q14999 1698 aa10.38□□□□□ -0.75
VPS33B-207ENST00000557470 PTPRGP23470 1445 aa10.37□□□□□ -0.75
VPS33B-207ENST00000557470 KIF27Q86VH2 1401 aa10.37□□□□□ -0.75
VPS33B-207ENST00000557470 TTBK1Q5TCY1 1321 aaPredicted RBP10.35□□□□□ -0.75
VPS33B-207ENST00000557470 ABCC2Q92887 1545 aa10.35□□□□□ -0.75
VPS33B-207ENST00000557470 ASXL2Q76L83 1435 aa10.33□□□□□ -0.76
VPS33B-207ENST00000557470 MKRN4PQ13434 485 aaPredicted RBP10.33□□□□□ -0.76
VPS33B-207ENST00000557470 CARMIL1Q5VZK9 1371 aa10.33□□□□□ -0.76
VPS33B-207ENST00000557470 TNIKQ9UKE5 1360 aa10.33□□□□□ -0.76
VPS33B-207ENST00000557470 PPRC1Q5VV67 1664 aaKnown RBP10.32□□□□□ -0.76
VPS33B-207ENST00000557470 CARMIL2Q6F5E8 1435 aa10.32□□□□□ -0.76
VPS33B-207ENST00000557470 GLI2P10070 1586 aa10.31□□□□□ -0.76
VPS33B-207ENST00000557470 PLB1Q6P1J6 1458 aa10.31□□□□□ -0.76
VPS33B-207ENST00000557470 IQGAP2Q13576 1575 aa10.31□□□□□ -0.76
VPS33B-207ENST00000557470 POTEHQ6S545 545 aa10.3□□□□□ -0.76
VPS33B-207ENST00000557470 ILDR1Q86SU0 546 aaPredicted RBP10.3□□□□□ -0.76
VPS33B-207ENST00000557470 UHRF1BP1LA0JNW5 1464 aa10.3□□□□□ -0.76
VPS33B-207ENST00000557470 ADGRL1O94910 1474 aa10.3□□□□□ -0.76
VPS33B-207ENST00000557470 UACAQ9BZF9 1416 aa10.29□□□□□ -0.76
VPS33B-207ENST00000557470 COL17A1Q9UMD9 1497 aaPredicted RBP10.29□□□□□ -0.76
VPS33B-207ENST00000557470 DISP1Q96F81 1524 aa10.28□□□□□ -0.76
VPS33B-207ENST00000557470 AKT1S1Q96B36 256 aa10.28□□□□□ -0.76
VPS33B-207ENST00000557470 EPRSP07814 1512 aaKnown RBP10.28□□□□□ -0.76
VPS33B-207ENST00000557470 KDM5BQ9UGL1 1544 aa10.26□□□□□ -0.77
VPS33B-207ENST00000557470 MAP3K4Q9Y6R4 1608 aa10.25□□□□□ -0.77
VPS33B-207ENST00000557470 TEX14Q8IWB6 1497 aa10.23□□□□□ -0.77
VPS33B-207ENST00000557470 UGGT2Q9NYU1 1516 aa10.23□□□□□ -0.77
VPS33B-207ENST00000557470 ZCCHC11Q5TAX3 1644 aaKnown RBP10.23□□□□□ -0.77
VPS33B-207ENST00000557470 REM2Q8IYK8 340 aaPredicted RBP10.22□□□□□ -0.77
VPS33B-207ENST00000557470 HECW2Q9P2P5 1572 aa10.22□□□□□ -0.77
VPS33B-207ENST00000557470 KIAA0556O60303 1618 aa10.22□□□□□ -0.77
VPS33B-207ENST00000557470 CHRDL2Q6WN34 429 aa10.21□□□□□ -0.77
VPS33B-207ENST00000557470 RAPGEF2Q9Y4G8 1499 aa10.21□□□□□ -0.78
VPS33B-207ENST00000557470 WDR7Q9Y4E6 1490 aa10.2□□□□□ -0.78
VPS33B-207ENST00000557470 SPDYE2BA6NHP3 402 aa10.18□□□□□ -0.78
VPS33B-207ENST00000557470 SPDYE6P0CI01 402 aa10.18□□□□□ -0.78
VPS33B-207ENST00000557470 SPDYE2Q495Y8 402 aa10.18□□□□□ -0.78
VPS33B-207ENST00000557470 CD109Q6YHK3 1445 aa10.16□□□□□ -0.78
VPS33B-207ENST00000557470 MAGI3Q5TCQ9 1506 aa10.15□□□□□ -0.78
VPS33B-207ENST00000557470 ABCA8O94911 1581 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms