RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 RAPGEF2Q9Y4G8 1499 aa15.96■□□□□ 0.14
TMEM260-213ENST00000556929 FBLN2P98095 1184 aa15.94■□□□□ 0.14
TMEM260-213ENST00000556929 GRIN2AQ12879 1464 aa15.92■□□□□ 0.14
TMEM260-213ENST00000556929 POTEDQ86YR6 584 aa15.92■□□□□ 0.14
TMEM260-213ENST00000556929 GOLGA3Q08378 1498 aa15.89■□□□□ 0.13
TMEM260-213ENST00000556929 CTTNBP2Q8WZ74 1663 aa15.87■□□□□ 0.13
TMEM260-213ENST00000556929 CEP170Q5SW79 1584 aa15.83■□□□□ 0.12
TMEM260-213ENST00000556929 EHMT2Q96KQ7 1210 aa15.82■□□□□ 0.12
TMEM260-213ENST00000556929 UBTFP17480 764 aaKnown RBP15.81■□□□□ 0.12
TMEM260-213ENST00000556929 NUP160Q12769 1436 aa15.81■□□□□ 0.12
TMEM260-213ENST00000556929 OSCARQ8IYS5 282 aa15.8■□□□□ 0.12
TMEM260-213ENST00000556929 KIAA0586Q9BVV6 1533 aa15.77■□□□□ 0.11
TMEM260-213ENST00000556929 IQGAP2Q13576 1575 aa15.76■□□□□ 0.11
TMEM260-213ENST00000556929 CLASP1Q7Z460 1538 aa15.75■□□□□ 0.11
TMEM260-213ENST00000556929 LOC105371045A0A1W2PR82 267 aa15.75■□□□□ 0.11
TMEM260-213ENST00000556929 TNIKQ9UKE5 1360 aa15.74■□□□□ 0.11
TMEM260-213ENST00000556929 SHROOM2Q13796 1616 aa15.69■□□□□ 0.1
TMEM260-213ENST00000556929 JPH4Q96JJ6 628 aa15.66■□□□□ 0.1
TMEM260-213ENST00000556929 UGGT2Q9NYU1 1516 aa15.66■□□□□ 0.1
TMEM260-213ENST00000556929 RANGAP1P46060 587 aaPredicted RBP15.63■□□□□ 0.09
TMEM260-213ENST00000556929 EFCAB5A4FU69 1503 aa15.63■□□□□ 0.09
TMEM260-213ENST00000556929 SAMD9Q5K651 1589 aa15.62■□□□□ 0.09
TMEM260-213ENST00000556929 CARMIL2Q6F5E8 1435 aa15.62■□□□□ 0.09
TMEM260-213ENST00000556929 PRG4Q92954 1404 aaPredicted RBP15.61■□□□□ 0.09
TMEM260-213ENST00000556929 KIAA0556O60303 1618 aa15.61■□□□□ 0.09
TMEM260-213ENST00000556929 CEP162Q5TB80 1403 aa15.6■□□□□ 0.09
TMEM260-213ENST00000556929 CLIP1P30622 1438 aa15.59■□□□□ 0.09
TMEM260-213ENST00000556929 DISP1Q96F81 1524 aa15.58■□□□□ 0.09
TMEM260-213ENST00000556929 ARHGAP35Q9NRY4 1499 aa15.56■□□□□ 0.08
TMEM260-213ENST00000556929 ERCC6L2Q5T890 1561 aa15.55■□□□□ 0.08
TMEM260-213ENST00000556929 RIMBP3CA6NJZ7 1639 aa15.54■□□□□ 0.08
TMEM260-213ENST00000556929 RIMBP3BA6NNM3 1639 aa15.54■□□□□ 0.08
TMEM260-213ENST00000556929 RIMBP3Q9UFD9 1639 aa15.54■□□□□ 0.08
TMEM260-213ENST00000556929 ARHGEF11O15085 1522 aa15.53■□□□□ 0.08
TMEM260-213ENST00000556929 P3H3Q8IVL6 736 aa15.53■□□□□ 0.08
TMEM260-213ENST00000556929 FHOD3Q2V2M9 1422 aa15.51■□□□□ 0.07
TMEM260-213ENST00000556929 TTBK1Q5TCY1 1321 aaPredicted RBP15.47■□□□□ 0.07
TMEM260-213ENST00000556929 ARAP1Q96P48 1450 aa15.47■□□□□ 0.07
TMEM260-213ENST00000556929 PTPRGP23470 1445 aa15.47■□□□□ 0.07
TMEM260-213ENST00000556929 FMN1Q68DA7 1419 aa15.46■□□□□ 0.07
TMEM260-213ENST00000556929 DNAJC5Q9H3Z4 198 aa15.46■□□□□ 0.07
TMEM260-213ENST00000556929 RAPGEF6Q8TEU7 1601 aa15.42■□□□□ 0.06
TMEM260-213ENST00000556929 VPS8Q8N3P4 1428 aa15.4■□□□□ 0.06
TMEM260-213ENST00000556929 ABCA8O94911 1581 aa15.4■□□□□ 0.06
TMEM260-213ENST00000556929 UACAQ9BZF9 1416 aa15.39■□□□□ 0.05
TMEM260-213ENST00000556929 HECW1Q76N89 1606 aa15.39■□□□□ 0.05
TMEM260-213ENST00000556929 PCF11O94913 1555 aaKnown RBP15.37■□□□□ 0.05
TMEM260-213ENST00000556929 CYB5RLQ6IPT4 315 aa15.37■□□□□ 0.05
TMEM260-213ENST00000556929 PLB1Q6P1J6 1458 aa15.37■□□□□ 0.05
TMEM260-213ENST00000556929 ABCC2Q92887 1545 aa15.37■□□□□ 0.05
TMEM260-213ENST00000556929 CASKIN1Q8WXD9 1431 aa15.36■□□□□ 0.05
TMEM260-213ENST00000556929 FYCO1Q9BQS8 1478 aa15.36■□□□□ 0.05
TMEM260-213ENST00000556929 UHRF1BP1LA0JNW5 1464 aa15.35■□□□□ 0.05
TMEM260-213ENST00000556929 MAPK8IP2Q13387 824 aaPredicted RBP15.35■□□□□ 0.05
TMEM260-213ENST00000556929 ATP1B4Q9UN42 357 aaPredicted RBP15.35■□□□□ 0.05
TMEM260-213ENST00000556929 ADCY10Q96PN6 1610 aa15.34■□□□□ 0.05
TMEM260-213ENST00000556929 LRRIQ1Q96JM4 1722 aa15.33■□□□□ 0.04
TMEM260-213ENST00000556929 SCAF1Q9H7N4 1312 aaKnown RBP15.32■□□□□ 0.04
TMEM260-213ENST00000556929 NUP153P49790 1475 aaKnown RBP15.3■□□□□ 0.04
TMEM260-213ENST00000556929 CCDC18Q5T9S5 1454 aa15.3■□□□□ 0.04
TMEM260-213ENST00000556929 ZCCHC11Q5TAX3 1644 aaKnown RBP15.29■□□□□ 0.04
TMEM260-213ENST00000556929 NPM1P06748 294 aaKnown RBP eCLIP15.29■□□□□ 0.04
TMEM260-213ENST00000556929 EPRSP07814 1512 aaKnown RBP15.28■□□□□ 0.04
TMEM260-213ENST00000556929 APLP2Q06481 763 aa15.28■□□□□ 0.04
TMEM260-213ENST00000556929 KDM5BQ9UGL1 1544 aa15.27■□□□□ 0.04
TMEM260-213ENST00000556929 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.27■□□□□ 0.04
TMEM260-213ENST00000556929 HNRNPUL2Q1KMD3 747 aaKnown RBP15.27■□□□□ 0.04
TMEM260-213ENST00000556929 CFAP43Q8NDM7 1665 aa15.27■□□□□ 0.03
TMEM260-213ENST00000556929 ATP10BO94823 1461 aa15.25■□□□□ 0.03
TMEM260-213ENST00000556929 TIAM1Q13009 1591 aa15.24■□□□□ 0.03
TMEM260-213ENST00000556929 MAP3K1Q13233 1512 aa15.24■□□□□ 0.03
TMEM260-213ENST00000556929 CDK13Q14004 1512 aaKnown RBP15.24■□□□□ 0.03
TMEM260-213ENST00000556929 ARID3CA6NKF2 412 aa15.24■□□□□ 0.03
TMEM260-213ENST00000556929 CDK11AQ9UQ88 783 aaPredicted RBP15.23■□□□□ 0.03
TMEM260-213ENST00000556929 DMRT2Q9Y5R5 561 aa15.23■□□□□ 0.03
TMEM260-213ENST00000556929 PLEKHD1A6NEE1 506 aa15.19■□□□□ 0.02
TMEM260-213ENST00000556929 PPP4R3CPQ6ZMV5 832 aa15.18■□□□□ 0.02
TMEM260-213ENST00000556929 MAPKBP1O60336 1514 aa15.17■□□□□ 0.02
TMEM260-213ENST00000556929 EHBP1L1Q8N3D4 1523 aa15.16■□□□□ 0.02
TMEM260-213ENST00000556929 MTUS2Q5JR59 1369 aa15.15■□□□□ 0.02
TMEM260-213ENST00000556929 ASXL2Q76L83 1435 aa15.15■□□□□ 0.02
TMEM260-213ENST00000556929 LRRC9Q6ZRR7 1453 aa15.14■□□□□ 0.01
TMEM260-213ENST00000556929 WDR7Q9Y4E6 1490 aa15.14■□□□□ 0.01
TMEM260-213ENST00000556929 SUPT6HQ7KZ85 1726 aaKnown RBP15.14■□□□□ 0.01
TMEM260-213ENST00000556929 TROQ12816 1431 aaPredicted RBP15.13■□□□□ 0.01
TMEM260-213ENST00000556929 MAGI3Q5TCQ9 1506 aa15.12■□□□□ 0.01
TMEM260-213ENST00000556929 KIF14Q15058 1648 aa15.12■□□□□ 0.01
TMEM260-213ENST00000556929 KANK4Q5T7N3 995 aaPredicted RBP15.1■□□□□ 0.01
TMEM260-213ENST00000556929 KCNH8Q96L42 1107 aa15.09■□□□□ 0.01
TMEM260-213ENST00000556929 DIP2BQ9P265 1576 aa15.07■□□□□ 0
TMEM260-213ENST00000556929 KIF13AQ9H1H9 1805 aa15.06■□□□□ 0
TMEM260-213ENST00000556929 GLI2P10070 1586 aa15.06■□□□□ 0
TMEM260-213ENST00000556929 ABCC10Q5T3U5 1492 aa15.05■□□□□ -0
TMEM260-213ENST00000556929 ABCA9Q8IUA7 1624 aa15.05■□□□□ -0
TMEM260-213ENST00000556929 MYO5CQ9NQX4 1742 aa15.05■□□□□ -0
TMEM260-213ENST00000556929 ITSN2Q9NZM3 1697 aa15.04■□□□□ -0
TMEM260-213ENST00000556929 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.04■□□□□ -0
TMEM260-213ENST00000556929 NCOA2Q15596 1464 aa15.04■□□□□ -0
TMEM260-213ENST00000556929 PPARGC1BQ86YN6 1023 aaKnown RBP15.04■□□□□ -0
TMEM260-213ENST00000556929 CDC42BPAQ5VT25 1732 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms