RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PRXQ9BXM0 1461 aa29.18■■■□□ 2.26
SHMT2-225ENST00000556798 CSRNP3Q8WYN3 585 aa29.17■■■□□ 2.26
SHMT2-225ENST00000556798 SHROOM2Q13796 1616 aa29.14■■■□□ 2.26
SHMT2-225ENST00000556798 CTTNBP2Q8WZ74 1663 aa29.09■■■□□ 2.25
SHMT2-225ENST00000556798 KIAA0586Q9BVV6 1533 aa29.09■■■□□ 2.25
SHMT2-225ENST00000556798 ERCC6L2Q5T890 1561 aa29.05■■■□□ 2.24
SHMT2-225ENST00000556798 IQGAP2Q13576 1575 aa29.04■■■□□ 2.24
SHMT2-225ENST00000556798 KIF21BO75037 1637 aa29.03■■■□□ 2.24
SHMT2-225ENST00000556798 ARAP1Q96P48 1450 aa28.97■■■□□ 2.23
SHMT2-225ENST00000556798 JPH4Q96JJ6 628 aa28.97■■■□□ 2.23
SHMT2-225ENST00000556798 PRG4Q92954 1404 aaPredicted RBP28.96■■■□□ 2.23
SHMT2-225ENST00000556798 EHMT2Q96KQ7 1210 aa28.88■■■□□ 2.21
SHMT2-225ENST00000556798 CYB5RLQ6IPT4 315 aa28.85■■■□□ 2.21
SHMT2-225ENST00000556798 UGGT2Q9NYU1 1516 aa28.84■■■□□ 2.21
SHMT2-225ENST00000556798 GOLGA3Q08378 1498 aa28.84■■■□□ 2.21
SHMT2-225ENST00000556798 DISP1Q96F81 1524 aa28.79■■■□□ 2.2
SHMT2-225ENST00000556798 KIAA0556O60303 1618 aa28.77■■■□□ 2.2
SHMT2-225ENST00000556798 CARMIL2Q6F5E8 1435 aa28.75■■■□□ 2.19
SHMT2-225ENST00000556798 UBTFP17480 764 aaKnown RBP28.7■■■□□ 2.18
SHMT2-225ENST00000556798 SAMD9Q5K651 1589 aa28.66■■■□□ 2.18
SHMT2-225ENST00000556798 TTBK1Q5TCY1 1321 aaPredicted RBP28.66■■■□□ 2.18
SHMT2-225ENST00000556798 TNIKQ9UKE5 1360 aa28.65■■■□□ 2.18
SHMT2-225ENST00000556798 RANGAP1P46060 587 aaPredicted RBP28.65■■■□□ 2.18
SHMT2-225ENST00000556798 PTPRGP23470 1445 aa28.6■■■□□ 2.17
SHMT2-225ENST00000556798 ADCY10Q96PN6 1610 aa28.57■■■□□ 2.16
SHMT2-225ENST00000556798 P3H3Q8IVL6 736 aa28.55■■■□□ 2.16
SHMT2-225ENST00000556798 EFCAB5A4FU69 1503 aa28.53■■■□□ 2.16
SHMT2-225ENST00000556798 FHOD3Q2V2M9 1422 aa28.48■■■□□ 2.15
SHMT2-225ENST00000556798 UACAQ9BZF9 1416 aa28.44■■■□□ 2.14
SHMT2-225ENST00000556798 ABCC2Q92887 1545 aa28.43■■■□□ 2.14
SHMT2-225ENST00000556798 PLB1Q6P1J6 1458 aa28.43■■■□□ 2.14
SHMT2-225ENST00000556798 ARHGAP35Q9NRY4 1499 aa28.43■■■□□ 2.14
SHMT2-225ENST00000556798 ABCA8O94911 1581 aa28.41■■■□□ 2.14
SHMT2-225ENST00000556798 UHRF1BP1LA0JNW5 1464 aa28.4■■■□□ 2.14
SHMT2-225ENST00000556798 LOC105371045A0A1W2PR82 267 aa28.4■■■□□ 2.14
SHMT2-225ENST00000556798 RAPGEF6Q8TEU7 1601 aa28.34■■■□□ 2.13
SHMT2-225ENST00000556798 ZCCHC11Q5TAX3 1644 aaKnown RBP28.33■■■□□ 2.13
SHMT2-225ENST00000556798 CLIP1P30622 1438 aa28.32■■■□□ 2.12
SHMT2-225ENST00000556798 NPM1P06748 294 aaKnown RBP eCLIP28.3■■■□□ 2.12
SHMT2-225ENST00000556798 KDM5BQ9UGL1 1544 aa28.28■■■□□ 2.12
SHMT2-225ENST00000556798 MAPKBP1O60336 1514 aa28.28■■■□□ 2.12
SHMT2-225ENST00000556798 CEP162Q5TB80 1403 aa28.26■■■□□ 2.11
SHMT2-225ENST00000556798 FMN1Q68DA7 1419 aa28.21■■■□□ 2.11
SHMT2-225ENST00000556798 ARID3CA6NKF2 412 aa28.21■■■□□ 2.11
SHMT2-225ENST00000556798 KIF13AQ9H1H9 1805 aa28.2■■■□□ 2.11
SHMT2-225ENST00000556798 NUP153P49790 1475 aaKnown RBP28.2■■■□□ 2.1
SHMT2-225ENST00000556798 TRHP20396 242 aaPredicted RBP28.19■■■□□ 2.1
SHMT2-225ENST00000556798 ASXL2Q76L83 1435 aa28.16■■■□□ 2.1
SHMT2-225ENST00000556798 PCF11O94913 1555 aaKnown RBP28.16■■■□□ 2.1
SHMT2-225ENST00000556798 HECW1Q76N89 1606 aa28.14■■■□□ 2.1
SHMT2-225ENST00000556798 DIP2BQ9P265 1576 aa28.14■■■□□ 2.1
SHMT2-225ENST00000556798 ATP10BO94823 1461 aa28.14■■■□□ 2.09
SHMT2-225ENST00000556798 LRRIQ1Q96JM4 1722 aa28.12■■■□□ 2.09
SHMT2-225ENST00000556798 ABCC10Q5T3U5 1492 aa28.09■■■□□ 2.09
SHMT2-225ENST00000556798 CDK13Q14004 1512 aaKnown RBP28.08■■■□□ 2.08
SHMT2-225ENST00000556798 ATP1B4Q9UN42 357 aaPredicted RBP28.07■■■□□ 2.08
SHMT2-225ENST00000556798 WDR7Q9Y4E6 1490 aa28.07■■■□□ 2.08
SHMT2-225ENST00000556798 CASKIN1Q8WXD9 1431 aa28.04■■■□□ 2.08
SHMT2-225ENST00000556798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.03■■■□□ 2.08
SHMT2-225ENST00000556798 HNRNPUL2Q1KMD3 747 aaKnown RBP28.03■■■□□ 2.08
SHMT2-225ENST00000556798 EPRSP07814 1512 aaKnown RBP28.02■■■□□ 2.08
SHMT2-225ENST00000556798 FYCO1Q9BQS8 1478 aa28.01■■■□□ 2.07
SHMT2-225ENST00000556798 FAM69CQ0P6D2 419 aa28■■■□□ 2.07
SHMT2-225ENST00000556798 TSPOAP1O95153 1857 aa28■■■□□ 2.07
SHMT2-225ENST00000556798 GLI2P10070 1586 aa27.97■■■□□ 2.07
SHMT2-225ENST00000556798 KCNH8Q96L42 1107 aa27.92■■■□□ 2.06
SHMT2-225ENST00000556798 MAP3K4Q9Y6R4 1608 aa27.92■■■□□ 2.06
SHMT2-225ENST00000556798 CCDC18Q5T9S5 1454 aa27.91■■■□□ 2.06
SHMT2-225ENST00000556798 VPS8Q8N3P4 1428 aa27.89■■■□□ 2.06
SHMT2-225ENST00000556798 CFAP43Q8NDM7 1665 aa27.88■■■□□ 2.05
SHMT2-225ENST00000556798 PPRC1Q5VV67 1664 aaKnown RBP27.87■■■□□ 2.05
SHMT2-225ENST00000556798 PLEKHD1A6NEE1 506 aa27.86■■■□□ 2.05
SHMT2-225ENST00000556798 ABCA9Q8IUA7 1624 aa27.84■■■□□ 2.05
SHMT2-225ENST00000556798 MAGI3Q5TCQ9 1506 aa27.81■■■□□ 2.04
SHMT2-225ENST00000556798 KIF14Q15058 1648 aa27.8■■■□□ 2.04
SHMT2-225ENST00000556798 TTC37Q6PGP7 1564 aa27.78■■■□□ 2.04
SHMT2-225ENST00000556798 TROQ12816 1431 aaPredicted RBP27.77■■■□□ 2.04
SHMT2-225ENST00000556798 CDK11AQ9UQ88 783 aaPredicted RBP27.77■■■□□ 2.04
SHMT2-225ENST00000556798 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.77■■■□□ 2.04
SHMT2-225ENST00000556798 CD109Q6YHK3 1445 aa27.75■■■□□ 2.03
SHMT2-225ENST00000556798 TIAM1Q13009 1591 aa27.73■■■□□ 2.03
SHMT2-225ENST00000556798 TEX14Q8IWB6 1497 aa27.68■■■□□ 2.02
SHMT2-225ENST00000556798 MYO5CQ9NQX4 1742 aa27.67■■■□□ 2.02
SHMT2-225ENST00000556798 EHBP1L1Q8N3D4 1523 aa27.65■■■□□ 2.02
SHMT2-225ENST00000556798 MTUS2Q5JR59 1369 aa27.63■■■□□ 2.01
SHMT2-225ENST00000556798 KDM6BO15054 1643 aa27.63■■■□□ 2.01
SHMT2-225ENST00000556798 CDC42BPAQ5VT25 1732 aa27.59■■■□□ 2.01
SHMT2-225ENST00000556798 MAP3K1Q13233 1512 aa27.59■■■□□ 2.01
SHMT2-225ENST00000556798 CDC42BPBQ9Y5S2 1711 aa27.57■■■□□ 2
SHMT2-225ENST00000556798 PREX2Q70Z35 1606 aa27.56■■■□□ 2
SHMT2-225ENST00000556798 CFAP74Q9C0B2 1584 aa27.56■■■□□ 2
SHMT2-225ENST00000556798 SUPT6HQ7KZ85 1726 aaKnown RBP27.55■■■□□ 2
SHMT2-225ENST00000556798 LRRC9Q6ZRR7 1453 aa27.55■■■□□ 2
SHMT2-225ENST00000556798 PLCH2O75038 1416 aa27.53■■■□□ 2
SHMT2-225ENST00000556798 FANCAO15360 1455 aa27.52■■■□□ 2
SHMT2-225ENST00000556798 NEO1Q92859 1461 aa27.51■■■□□ 2
SHMT2-225ENST00000556798 ARHGAP5Q13017 1502 aa27.51■■□□□ 1.99
SHMT2-225ENST00000556798 ARAP3Q8WWN8 1544 aa27.51■■□□□ 1.99
SHMT2-225ENST00000556798 COL17A1Q9UMD9 1497 aaPredicted RBP27.51■■□□□ 1.99
SHMT2-225ENST00000556798 APLP2Q06481 763 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms