RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 SUPT16HQ9Y5B9 1047 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-211ENST00000556726 ARAP1Q96P48 1450 aa17.06■□□□□ 0.32
CCDC88C-211ENST00000556726 UNC13AQ9UPW8 1703 aa17.06■□□□□ 0.32
CCDC88C-211ENST00000556726 HNRNPUQ00839 825 aaKnown RBP eCLIP17.06■□□□□ 0.32
CCDC88C-211ENST00000556726 ERICH6Q7L0X2 663 aa17.04■□□□□ 0.32
CCDC88C-211ENST00000556726 FHOD3Q2V2M9 1422 aa17.02■□□□□ 0.32
CCDC88C-211ENST00000556726 TDRD9Q8NDG6 1382 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-211ENST00000556726 FOXD1Q16676 465 aa17.01■□□□□ 0.31
CCDC88C-211ENST00000556726 FAM9BQ8IZU0 186 aa17.01■□□□□ 0.31
CCDC88C-211ENST00000556726 CLSPNQ9HAW4 1339 aa16.98■□□□□ 0.31
CCDC88C-211ENST00000556726 IGF1RP08069 1367 aa16.98■□□□□ 0.31
CCDC88C-211ENST00000556726 SETD5Q9C0A6 1442 aa16.96■□□□□ 0.31
CCDC88C-211ENST00000556726 CADPSQ9ULU8 1353 aa16.93■□□□□ 0.3
CCDC88C-211ENST00000556726 PHLDB1Q86UU1 1377 aa16.91■□□□□ 0.3
CCDC88C-211ENST00000556726 CUX1P39880 1505 aa16.91■□□□□ 0.3
CCDC88C-211ENST00000556726 ARHGAP35Q9NRY4 1499 aa16.91■□□□□ 0.3
CCDC88C-211ENST00000556726 PRXQ9BXM0 1461 aa16.9■□□□□ 0.3
CCDC88C-211ENST00000556726 RAD54L2Q9Y4B4 1467 aa16.9■□□□□ 0.3
CCDC88C-211ENST00000556726 SALL2Q9Y467 1007 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-211ENST00000556726 FGD5Q6ZNL6 1462 aa16.86■□□□□ 0.29
CCDC88C-211ENST00000556726 TOP2BQ02880 1626 aa16.86■□□□□ 0.29
CCDC88C-211ENST00000556726 PPP1R15AO75807 674 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-211ENST00000556726 MYT1Q01538 1121 aa16.85■□□□□ 0.29
CCDC88C-211ENST00000556726 DNAJC5BQ9UF47 199 aa16.85■□□□□ 0.29
CCDC88C-211ENST00000556726 FHAD1B1AJZ9 1412 aa16.85■□□□□ 0.29
CCDC88C-211ENST00000556726 KDM2AQ9Y2K7 1162 aa16.83■□□□□ 0.29
CCDC88C-211ENST00000556726 NCAPD3P42695 1498 aa16.83■□□□□ 0.28
CCDC88C-211ENST00000556726 SLC4A1APQ9BWU0 796 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-211ENST00000556726 MYT1LQ9UL68 1186 aa16.82■□□□□ 0.28
CCDC88C-211ENST00000556726 MRS2Q9HD23 443 aa16.82■□□□□ 0.28
CCDC88C-211ENST00000556726 EIF4G2P78344 907 aaKnown RBP eCLIP16.79■□□□□ 0.28
CCDC88C-211ENST00000556726 TSHZ2Q9NRE2 1034 aa16.78■□□□□ 0.28
CCDC88C-211ENST00000556726 CFTRP13569 1480 aa16.78■□□□□ 0.28
CCDC88C-211ENST00000556726 FANCD2Q9BXW9 1451 aa16.77■□□□□ 0.28
CCDC88C-211ENST00000556726 NESP48681 1621 aa16.77■□□□□ 0.28
CCDC88C-211ENST00000556726 CDK11AQ9UQ88 783 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-211ENST00000556726 HSPA5P11021 654 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-211ENST00000556726 RRBP1Q9P2E9 1410 aaKnown RBP16.75■□□□□ 0.27
CCDC88C-211ENST00000556726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.72■□□□□ 0.27
CCDC88C-211ENST00000556726 ERICH3Q5RHP9 1530 aa16.72■□□□□ 0.27
CCDC88C-211ENST00000556726 LRRC9Q6ZRR7 1453 aa16.72■□□□□ 0.27
CCDC88C-211ENST00000556726 CHMP7Q8WUX9 453 aaPredicted RBP16.71■□□□□ 0.27
CCDC88C-211ENST00000556726 PEG3Q9GZU2 1588 aa16.71■□□□□ 0.27
CCDC88C-211ENST00000556726 L3MBTL2Q969R5 705 aa16.68■□□□□ 0.26
CCDC88C-211ENST00000556726 RGL3Q3MIN7 710 aa16.66■□□□□ 0.26
CCDC88C-211ENST00000556726 CFDP1Q9UEE9 299 aaPredicted RBP16.66■□□□□ 0.26
CCDC88C-211ENST00000556726 MPHOSPH9Q99550 1183 aa16.66■□□□□ 0.26
CCDC88C-211ENST00000556726 ZNF644Q9H582 1327 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-211ENST00000556726 B4GALNT3Q6L9W6 998 aa16.64■□□□□ 0.25
CCDC88C-211ENST00000556726 WDR97A6NE52 1622 aa16.64■□□□□ 0.25
CCDC88C-211ENST00000556726 FMN1Q68DA7 1419 aa16.63■□□□□ 0.25
CCDC88C-211ENST00000556726 RBM19Q9Y4C8 960 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-211ENST00000556726 TMC1Q8TDI8 760 aa16.6■□□□□ 0.25
CCDC88C-211ENST00000556726 CCDC18Q5T9S5 1454 aa16.6■□□□□ 0.25
CCDC88C-211ENST00000556726 TIMELESSQ9UNS1 1208 aa16.59■□□□□ 0.25
CCDC88C-211ENST00000556726 CCER2I3L3R5 266 aa16.58■□□□□ 0.25
CCDC88C-211ENST00000556726 FGD6Q6ZV73 1430 aa16.58■□□□□ 0.24
CCDC88C-211ENST00000556726 NPM2Q86SE8 214 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-211ENST00000556726 TIAM1Q13009 1591 aa16.57■□□□□ 0.24
CCDC88C-211ENST00000556726 HMGXB3Q12766 1538 aa16.56■□□□□ 0.24
CCDC88C-211ENST00000556726 SENP3Q9H4L4 574 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-211ENST00000556726 CCDC184Q52MB2 194 aa16.56■□□□□ 0.24
CCDC88C-211ENST00000556726 TSPY4P0CV99 314 aa16.55■□□□□ 0.24
CCDC88C-211ENST00000556726 TSPY10P0CW01 314 aa16.55■□□□□ 0.24
CCDC88C-211ENST00000556726 POLA1P09884 1462 aaPredicted RBP16.55■□□□□ 0.24
CCDC88C-211ENST00000556726 ANP32EQ9BTT0 268 aa16.54■□□□□ 0.24
CCDC88C-211ENST00000556726 PKD2Q13563 968 aa16.53■□□□□ 0.24
CCDC88C-211ENST00000556726 BIVM-ERCC5R4GMW8 1640 aa16.53■□□□□ 0.24
CCDC88C-211ENST00000556726 AQRO60306 1485 aaKnown RBP eCLIP16.53■□□□□ 0.242e-6■■■□□ 18.3
CCDC88C-211ENST00000556726 CARD11Q9BXL7 1154 aa16.52■□□□□ 0.23
CCDC88C-211ENST00000556726 PLEKHD1A6NEE1 506 aa16.51■□□□□ 0.23
CCDC88C-211ENST00000556726 CCDC136Q96JN2 1154 aa16.51■□□□□ 0.23
CCDC88C-211ENST00000556726 PDS5BQ9NTI5 1447 aa16.51■□□□□ 0.23
CCDC88C-211ENST00000556726 NBR1Q14596 966 aa16.51■□□□□ 0.23
CCDC88C-211ENST00000556726 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
CCDC88C-211ENST00000556726 WASHC2AQ641Q2 1341 aa16.5■□□□□ 0.23
CCDC88C-211ENST00000556726 CC2D2AQ9P2K1 1620 aa16.5■□□□□ 0.23
CCDC88C-211ENST00000556726 PCF11O94913 1555 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-211ENST00000556726 DCAF11Q8TEB1 546 aa16.49■□□□□ 0.23
CCDC88C-211ENST00000556726 TOPBP1Q92547 1522 aa16.49■□□□□ 0.23
CCDC88C-211ENST00000556726 CASKIN1Q8WXD9 1431 aa16.48■□□□□ 0.23
CCDC88C-211ENST00000556726 NCOA2Q15596 1464 aa16.48■□□□□ 0.23
CCDC88C-211ENST00000556726 MAPKBP1O60336 1514 aa16.48■□□□□ 0.23
CCDC88C-211ENST00000556726 MYOM3Q5VTT5 1437 aa16.44■□□□□ 0.22
CCDC88C-211ENST00000556726 C11orf95C9JLR9 678 aaPredicted RBP16.44■□□□□ 0.22
CCDC88C-211ENST00000556726 NBPF8Q3BBV2 869 aa16.43■□□□□ 0.22
CCDC88C-211ENST00000556726 PTPRKQ15262 1439 aa16.43■□□□□ 0.22
CCDC88C-211ENST00000556726 UACAQ9BZF9 1416 aa16.43■□□□□ 0.22
CCDC88C-211ENST00000556726 HNRNPMP52272 730 aaKnown RBP eCLIP16.43■□□□□ 0.22
CCDC88C-211ENST00000556726 PRKRIP1Q9H875 184 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-211ENST00000556726 CC2D1BQ5T0F9 858 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-211ENST00000556726 FYCO1Q9BQS8 1478 aa16.4■□□□□ 0.22
CCDC88C-211ENST00000556726 PPP4R2Q9NY27 417 aa16.39■□□□□ 0.21
CCDC88C-211ENST00000556726 NAIPQ13075 1403 aa16.38■□□□□ 0.21
CCDC88C-211ENST00000556726 CHGAP10645 457 aaKnown RBP16.38■□□□□ 0.21
CCDC88C-211ENST00000556726 NUP155O75694 1391 aa16.37■□□□□ 0.21
CCDC88C-211ENST00000556726 ERCC6Q03468 1493 aa16.37■□□□□ 0.21
CCDC88C-211ENST00000556726 CDK13Q14004 1512 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-211ENST00000556726 KIF7Q2M1P5 1343 aa16.34■□□□□ 0.21
CCDC88C-211ENST00000556726 JPH4Q96JJ6 628 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms