RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 NPM3O75607 178 aaKnown RBP18.48■□□□□ 0.55
SCFD1-220ENST00000556486 PBRM1Q86U86 1689 aa18.47■□□□□ 0.55
SCFD1-220ENST00000556486 GRIN2BQ13224 1484 aa18.46■□□□□ 0.55
SCFD1-220ENST00000556486 GAPVD1Q14C86 1478 aa18.46■□□□□ 0.55
SCFD1-220ENST00000556486 SYNJ2O15056 1496 aa18.46■□□□□ 0.54
SCFD1-220ENST00000556486 WDR97A6NE52 1622 aa18.45■□□□□ 0.54
SCFD1-220ENST00000556486 ERCC6L2Q5T890 1561 aa18.41■□□□□ 0.54
SCFD1-220ENST00000556486 ABCA5Q8WWZ7 1642 aa18.31■□□□□ 0.52
SCFD1-220ENST00000556486 DCAF8L1A6NGE4 600 aa18.3■□□□□ 0.52
SCFD1-220ENST00000556486 CEP170Q5SW79 1584 aa18.27■□□□□ 0.52
SCFD1-220ENST00000556486 GRIN2AQ12879 1464 aa18.26■□□□□ 0.51
SCFD1-220ENST00000556486 ABCA10Q8WWZ4 1543 aa18.25■□□□□ 0.51
SCFD1-220ENST00000556486 KIF13AQ9H1H9 1805 aa18.25■□□□□ 0.51
SCFD1-220ENST00000556486 ADAMTS12P58397 1594 aa18.22■□□□□ 0.51
SCFD1-220ENST00000556486 SHROOM2Q13796 1616 aa18.16■□□□□ 0.5
SCFD1-220ENST00000556486 NUP160Q12769 1436 aa18.16■□□□□ 0.5
SCFD1-220ENST00000556486 ZBTB22O15209 634 aa18.1■□□□□ 0.49
SCFD1-220ENST00000556486 WRNQ14191 1432 aaPredicted RBP eCLIP18.09■□□□□ 0.49
SCFD1-220ENST00000556486 PRG4Q92954 1404 aaPredicted RBP18.09■□□□□ 0.49
SCFD1-220ENST00000556486 FHAD1B1AJZ9 1412 aa18.08■□□□□ 0.49
SCFD1-220ENST00000556486 FAM69CQ0P6D2 419 aa18.06■□□□□ 0.48
SCFD1-220ENST00000556486 BIVM-ERCC5R4GMW8 1640 aa18.05■□□□□ 0.48
SCFD1-220ENST00000556486 TOP2BQ02880 1626 aa18.02■□□□□ 0.48
SCFD1-220ENST00000556486 SUPT5HO00267 1087 aaKnown RBP18.02■□□□□ 0.48
SCFD1-220ENST00000556486 TSPOAP1O95153 1857 aa18.02■□□□□ 0.48
SCFD1-220ENST00000556486 ERICH3Q5RHP9 1530 aa18■□□□□ 0.47
SCFD1-220ENST00000556486 ABCC10Q5T3U5 1492 aa18■□□□□ 0.47
SCFD1-220ENST00000556486 DIP2BQ9P265 1576 aa18■□□□□ 0.47
SCFD1-220ENST00000556486 JPH4Q96JJ6 628 aa17.99■□□□□ 0.47
SCFD1-220ENST00000556486 ADCY10Q96PN6 1610 aa17.98■□□□□ 0.47
SCFD1-220ENST00000556486 RUSC2Q8N2Y8 1516 aa17.98■□□□□ 0.47
SCFD1-220ENST00000556486 KDM4FA0A1W2PPD8 638 aa17.97■□□□□ 0.47
SCFD1-220ENST00000556486 KDM6BO15054 1643 aa17.97■□□□□ 0.47
SCFD1-220ENST00000556486 NPM1P06748 294 aaKnown RBP eCLIP17.95■□□□□ 0.46
SCFD1-220ENST00000556486 MAPKBP1O60336 1514 aa17.93■□□□□ 0.46
SCFD1-220ENST00000556486 ILDR1Q86SU0 546 aaPredicted RBP17.91■□□□□ 0.46
SCFD1-220ENST00000556486 TTBK1Q5TCY1 1321 aaPredicted RBP17.89■□□□□ 0.45
SCFD1-220ENST00000556486 RNF39Q9H2S5 420 aa17.81■□□□□ 0.44
SCFD1-220ENST00000556486 PPRC1Q5VV67 1664 aaKnown RBP17.76■□□□□ 0.43
SCFD1-220ENST00000556486 KIAA0586Q9BVV6 1533 aa17.76■□□□□ 0.43
SCFD1-220ENST00000556486 FOXD4L1Q9NU39 408 aa17.75■□□□□ 0.43
SCFD1-220ENST00000556486 ADGRL1O94910 1474 aa17.75■□□□□ 0.43
SCFD1-220ENST00000556486 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.73■□□□□ 0.43
SCFD1-220ENST00000556486 CUL7Q14999 1698 aa17.72■□□□□ 0.43
SCFD1-220ENST00000556486 PTPRGP23470 1445 aa17.71■□□□□ 0.43
SCFD1-220ENST00000556486 IGF1RP08069 1367 aa17.69■□□□□ 0.42
SCFD1-220ENST00000556486 ASXL2Q76L83 1435 aa17.69■□□□□ 0.42
SCFD1-220ENST00000556486 ABCC2Q92887 1545 aa17.67■□□□□ 0.42
SCFD1-220ENST00000556486 HECW2Q9P2P5 1572 aa17.66■□□□□ 0.42
SCFD1-220ENST00000556486 COL17A1Q9UMD9 1497 aaPredicted RBP17.65■□□□□ 0.42
SCFD1-220ENST00000556486 TNIKQ9UKE5 1360 aa17.63■□□□□ 0.41
SCFD1-220ENST00000556486 KIF27Q86VH2 1401 aa17.63■□□□□ 0.41
SCFD1-220ENST00000556486 GLI2P10070 1586 aa17.62■□□□□ 0.41
SCFD1-220ENST00000556486 PLB1Q6P1J6 1458 aa17.62■□□□□ 0.41
SCFD1-220ENST00000556486 CARMIL2Q6F5E8 1435 aa17.6■□□□□ 0.41
SCFD1-220ENST00000556486 IQGAP2Q13576 1575 aa17.59■□□□□ 0.41
SCFD1-220ENST00000556486 MAP3K4Q9Y6R4 1608 aa17.58■□□□□ 0.41
SCFD1-220ENST00000556486 EPRSP07814 1512 aaKnown RBP17.57■□□□□ 0.4
SCFD1-220ENST00000556486 CARMIL1Q5VZK9 1371 aa17.57■□□□□ 0.4
SCFD1-220ENST00000556486 SLC4A2P04920 1241 aa17.57■□□□□ 0.4
SCFD1-220ENST00000556486 C1QBPQ07021 282 aaKnown RBP17.57■□□□□ 0.4
SCFD1-220ENST00000556486 CACNB1Q02641 598 aaPredicted RBP17.56■□□□□ 0.4
SCFD1-220ENST00000556486 ZCCHC11Q5TAX3 1644 aaKnown RBP17.56■□□□□ 0.4
SCFD1-220ENST00000556486 UACAQ9BZF9 1416 aa17.55■□□□□ 0.4
SCFD1-220ENST00000556486 DISP1Q96F81 1524 aa17.54■□□□□ 0.4
SCFD1-220ENST00000556486 UHRF1BP1LA0JNW5 1464 aa17.54■□□□□ 0.4
SCFD1-220ENST00000556486 KDM5BQ9UGL1 1544 aa17.5■□□□□ 0.39
SCFD1-220ENST00000556486 TEX14Q8IWB6 1497 aa17.5■□□□□ 0.39
SCFD1-220ENST00000556486 KIAA0556O60303 1618 aa17.46■□□□□ 0.39
SCFD1-220ENST00000556486 U3KPZ7 1027 aaPredicted RBP17.45■□□□□ 0.38
SCFD1-220ENST00000556486 KIF21BO75037 1637 aa17.44■□□□□ 0.38
SCFD1-220ENST00000556486 SLC24A1O60721 1099 aa17.44■□□□□ 0.38
SCFD1-220ENST00000556486 WDR7Q9Y4E6 1490 aa17.43■□□□□ 0.38
SCFD1-220ENST00000556486 KCNH8Q96L42 1107 aa17.42■□□□□ 0.38
SCFD1-220ENST00000556486 UGGT2Q9NYU1 1516 aa17.41■□□□□ 0.38
SCFD1-220ENST00000556486 CD109Q6YHK3 1445 aa17.38■□□□□ 0.37
SCFD1-220ENST00000556486 CFAP43Q8NDM7 1665 aa17.37■□□□□ 0.37
SCFD1-220ENST00000556486 RTN4Q9NQC3 1192 aaKnown RBP17.37■□□□□ 0.37
SCFD1-220ENST00000556486 RAPGEF2Q9Y4G8 1499 aa17.37■□□□□ 0.37
SCFD1-220ENST00000556486 AMER1Q5JTC6 1135 aaPredicted RBP17.36■□□□□ 0.37
SCFD1-220ENST00000556486 ARID3CA6NKF2 412 aa17.34■□□□□ 0.37
SCFD1-220ENST00000556486 CTTNBP2Q8WZ74 1663 aa17.32■□□□□ 0.36
SCFD1-220ENST00000556486 MAGI3Q5TCQ9 1506 aa17.31■□□□□ 0.36
SCFD1-220ENST00000556486 FBXO41Q8TF61 875 aa17.31■□□□□ 0.36
SCFD1-220ENST00000556486 ABCA8O94911 1581 aa17.28■□□□□ 0.36
SCFD1-220ENST00000556486 PTPRMP28827 1452 aa17.24■□□□□ 0.35
SCFD1-220ENST00000556486 ADAMTSL3P82987 1691 aa17.23■□□□□ 0.35
SCFD1-220ENST00000556486 GOLGA3Q08378 1498 aa17.21■□□□□ 0.35
SCFD1-220ENST00000556486 RAPGEF3O95398 923 aa17.21■□□□□ 0.35
SCFD1-220ENST00000556486 P3H3Q8IVL6 736 aa17.21■□□□□ 0.35
SCFD1-220ENST00000556486 ARAP3Q8WWN8 1544 aa17.21■□□□□ 0.34
SCFD1-220ENST00000556486 MADDQ8WXG6 1647 aa17.2■□□□□ 0.34
SCFD1-220ENST00000556486 ARID4BQ4LE39 1312 aaPredicted RBP17.18■□□□□ 0.34
SCFD1-220ENST00000556486 BCORL1Q5H9F3 1711 aa17.17■□□□□ 0.34
SCFD1-220ENST00000556486 PCF11O94913 1555 aaKnown RBP17.15■□□□□ 0.34
SCFD1-220ENST00000556486 ABCA9Q8IUA7 1624 aa17.15■□□□□ 0.34
SCFD1-220ENST00000556486 RIMS1Q86UR5 1692 aaKnown RBP17.15■□□□□ 0.34
SCFD1-220ENST00000556486 FRMPD1Q5SYB0 1578 aa17.15■□□□□ 0.34
SCFD1-220ENST00000556486 ATP10BO94823 1461 aa17.14■□□□□ 0.33
SCFD1-220ENST00000556486 LMTK3Q96Q04 1460 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms