RNA–Protein interactions for RNA: ENST00000556463.5

MARK3-210, Transcript of microtubule affinity regulating kinase 3, humanhuman

TSL 1 (best)

Gene MARK3, Length 3,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MARK3-210ENST00000556463 TOP2BQ02880 1626 aa12.4□□□□□ -0.42
MARK3-210ENST00000556463 BICRAQ9NZM4 1560 aa12.4□□□□□ -0.42
MARK3-210ENST00000556463 TSHZ2Q9NRE2 1034 aa12.4□□□□□ -0.42
MARK3-210ENST00000556463 BIVM-ERCC5R4GMW8 1640 aa12.39□□□□□ -0.43
MARK3-210ENST00000556463 ARAP1Q96P48 1450 aa12.39□□□□□ -0.43
MARK3-210ENST00000556463 PRXQ9BXM0 1461 aa12.38□□□□□ -0.43
MARK3-210ENST00000556463 TPRNQ4KMQ1 711 aa12.33□□□□□ -0.44
MARK3-210ENST00000556463 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.31□□□□□ -0.44
MARK3-210ENST00000556463 MAPKBP1O60336 1514 aa12.3□□□□□ -0.44
MARK3-210ENST00000556463 EIF5BO60841 1220 aaKnown RBP12.3□□□□□ -0.44
MARK3-210ENST00000556463 ATAD2BQ9ULI0 1458 aa12.29□□□□□ -0.44
MARK3-210ENST00000556463 MAP3K1Q13233 1512 aa12.26□□□□□ -0.45
MARK3-210ENST00000556463 HAP1P54257 671 aaPredicted RBP12.26□□□□□ -0.45
MARK3-210ENST00000556463 TULP1O00294 542 aaPredicted RBP12.25□□□□□ -0.45
MARK3-210ENST00000556463 KANK4Q5T7N3 995 aaPredicted RBP12.25□□□□□ -0.45
MARK3-210ENST00000556463 FOXD4L1Q9NU39 408 aa12.23□□□□□ -0.45
MARK3-210ENST00000556463 ITGAEP38570 1179 aa12.22□□□□□ -0.45
MARK3-210ENST00000556463 CCNB3Q8WWL7 1395 aa12.22□□□□□ -0.45
MARK3-210ENST00000556463 SALL2Q9Y467 1007 aaPredicted RBP12.2□□□□□ -0.46
MARK3-210ENST00000556463 ARHGAP35Q9NRY4 1499 aa12.2□□□□□ -0.46
MARK3-210ENST00000556463 NBR1Q14596 966 aa12.19□□□□□ -0.46
MARK3-210ENST00000556463 KCNH8Q96L42 1107 aa12.17□□□□□ -0.46
MARK3-210ENST00000556463 CUX1P39880 1505 aa12.16□□□□□ -0.46
MARK3-210ENST00000556463 WDR97A6NE52 1622 aa12.16□□□□□ -0.46
MARK3-210ENST00000556463 PPP1R15AO75807 674 aaPredicted RBP12.15□□□□□ -0.46
MARK3-210ENST00000556463 ARXQ96QS3 562 aa12.15□□□□□ -0.46
MARK3-210ENST00000556463 RAB3GAP2Q9H2M9 1393 aa12.15□□□□□ -0.46
MARK3-210ENST00000556463 TIAM1Q13009 1591 aa12.15□□□□□ -0.46
MARK3-210ENST00000556463 FOXD1Q16676 465 aa12.15□□□□□ -0.46
MARK3-210ENST00000556463 NEFLP07196 543 aa12.14□□□□□ -0.47
MARK3-210ENST00000556463 DEKP35659 375 aaKnown RBP12.14□□□□□ -0.47
MARK3-210ENST00000556463 CCER2I3L3R5 266 aa12.1□□□□□ -0.47
MARK3-210ENST00000556463 RBM19Q9Y4C8 960 aaKnown RBP12.1□□□□□ -0.47
MARK3-210ENST00000556463 SETD5Q9C0A6 1442 aa12.1□□□□□ -0.47
MARK3-210ENST00000556463 CFAP43Q8NDM7 1665 aa12.1□□□□□ -0.47
MARK3-210ENST00000556463 KIF27Q86VH2 1401 aa12.1□□□□□ -0.47
MARK3-210ENST00000556463 HMGXB3Q12766 1538 aa12.09□□□□□ -0.47
MARK3-210ENST00000556463 LRRC9Q6ZRR7 1453 aa12.08□□□□□ -0.48
MARK3-210ENST00000556463 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.06□□□□□ -0.48
MARK3-210ENST00000556463 PRDM2Q13029 1718 aa12.05□□□□□ -0.48
MARK3-210ENST00000556463 CFTRP13569 1480 aa12.03□□□□□ -0.48
MARK3-210ENST00000556463 PHLDB1Q86UU1 1377 aa12.03□□□□□ -0.48
MARK3-210ENST00000556463 NCAPD3P42695 1498 aa12.03□□□□□ -0.48
MARK3-210ENST00000556463 PABPN1Q86U42 306 aaKnown RBP eCLIP12.02□□□□□ -0.49
MARK3-210ENST00000556463 MSH5O43196 834 aa12.01□□□□□ -0.49
MARK3-210ENST00000556463 KDM2AQ9Y2K7 1162 aa12.01□□□□□ -0.49
MARK3-210ENST00000556463 FANCIQ9NVI1 1328 aa12.01□□□□□ -0.49
MARK3-210ENST00000556463 KDM5BQ9UGL1 1544 aa12.01□□□□□ -0.49
MARK3-210ENST00000556463 RTL5Q5HYW3 569 aaPredicted RBP11.99□□□□□ -0.49
MARK3-210ENST00000556463 IGF1RP08069 1367 aa11.99□□□□□ -0.49
MARK3-210ENST00000556463 DDX10Q13206 875 aaKnown RBP11.98□□□□□ -0.49
MARK3-210ENST00000556463 RANGAP1P46060 587 aaPredicted RBP11.98□□□□□ -0.49
MARK3-210ENST00000556463 PLEKHG5O94827 1062 aa11.97□□□□□ -0.49
MARK3-210ENST00000556463 PCF11O94913 1555 aaKnown RBP11.96□□□□□ -0.49
MARK3-210ENST00000556463 SIN3AQ96ST3 1273 aa11.95□□□□□ -0.5
MARK3-210ENST00000556463 AQRO60306 1485 aaKnown RBP eCLIP11.95□□□□□ -0.5
MARK3-210ENST00000556463 FBLN2P98095 1184 aa11.95□□□□□ -0.5
MARK3-210ENST00000556463 FHAD1B1AJZ9 1412 aa11.94□□□□□ -0.5
MARK3-210ENST00000556463 IRX6P78412 446 aaPredicted RBP11.92□□□□□ -0.5
MARK3-210ENST00000556463 ERICH6BQ5W0A0 696 aa11.92□□□□□ -0.5
MARK3-210ENST00000556463 IL27Q8NEV9 243 aa11.92□□□□□ -0.5
MARK3-210ENST00000556463 FYCO1Q9BQS8 1478 aa11.92□□□□□ -0.5
MARK3-210ENST00000556463 VSIG10Q8N0Z9 540 aa11.91□□□□□ -0.5
MARK3-210ENST00000556463 FGD5Q6ZNL6 1462 aa11.9□□□□□ -0.5
MARK3-210ENST00000556463 ANP32CO43423 234 aa11.89□□□□□ -0.51
MARK3-210ENST00000556463 CDK11AQ9UQ88 783 aaPredicted RBP11.89□□□□□ -0.51
MARK3-210ENST00000556463 EFCAB5A4FU69 1503 aa11.89□□□□□ -0.51
MARK3-210ENST00000556463 PKNOX2Q96KN3 472 aa11.89□□□□□ -0.51
MARK3-210ENST00000556463 HFM1A2PYH4 1435 aa11.89□□□□□ -0.51
MARK3-210ENST00000556463 NCOA2Q15596 1464 aa11.88□□□□□ -0.51
MARK3-210ENST00000556463 PTPN23Q9H3S7 1636 aa11.88□□□□□ -0.51
MARK3-210ENST00000556463 CASKIN1Q8WXD9 1431 aa11.88□□□□□ -0.51
MARK3-210ENST00000556463 UACAQ9BZF9 1416 aa11.88□□□□□ -0.51
MARK3-210ENST00000556463 CARMIL1Q5VZK9 1371 aa11.87□□□□□ -0.51
MARK3-210ENST00000556463 TRIM52Q96A61 297 aa11.87□□□□□ -0.51
MARK3-210ENST00000556463 PTPRKQ15262 1439 aa11.85□□□□□ -0.51
MARK3-210ENST00000556463 UBE2Q2Q8WVN8 375 aa11.85□□□□□ -0.51
MARK3-210ENST00000556463 FGD6Q6ZV73 1430 aa11.84□□□□□ -0.51
MARK3-210ENST00000556463 SNAPC4Q5SXM2 1469 aa11.84□□□□□ -0.51
MARK3-210ENST00000556463 CCDC18Q5T9S5 1454 aa11.84□□□□□ -0.51
MARK3-210ENST00000556463 PODXL2Q9NZ53 605 aa11.84□□□□□ -0.51
MARK3-210ENST00000556463 LRRIQ1Q96JM4 1722 aa11.84□□□□□ -0.51
MARK3-210ENST00000556463 DENND4BO75064 1496 aaPredicted RBP11.83□□□□□ -0.52
MARK3-210ENST00000556463 HOMEZQ8IX15 550 aa11.82□□□□□ -0.52
MARK3-210ENST00000556463 NAIPQ13075 1403 aa11.82□□□□□ -0.52
MARK3-210ENST00000556463 CTTNBP2Q8WZ74 1663 aa11.81□□□□□ -0.52
MARK3-210ENST00000556463 ARHGEF11O15085 1522 aa11.81□□□□□ -0.52
MARK3-210ENST00000556463 MYT1LQ9UL68 1186 aa11.81□□□□□ -0.52
MARK3-210ENST00000556463 CC2D2AQ9P2K1 1620 aa11.8□□□□□ -0.52
MARK3-210ENST00000556463 HECW1Q76N89 1606 aa11.8□□□□□ -0.52
MARK3-210ENST00000556463 POLR1AO95602 1720 aaPredicted RBP11.8□□□□□ -0.52
MARK3-210ENST00000556463 ABCA5Q8WWZ7 1642 aa11.79□□□□□ -0.52
MARK3-210ENST00000556463 GCC2Q8IWJ2 1684 aa11.79□□□□□ -0.52
MARK3-210ENST00000556463 CNKSR2Q8WXI2 1034 aa11.79□□□□□ -0.52
MARK3-210ENST00000556463 HIRIP3Q9BW71 556 aaPredicted RBP11.79□□□□□ -0.52
MARK3-210ENST00000556463 SAMD9Q5K651 1589 aa11.79□□□□□ -0.52
MARK3-210ENST00000556463 THOC2Q8NI27 1593 aaKnown RBP11.78□□□□□ -0.52
MARK3-210ENST00000556463 TONSLQ96HA7 1378 aa11.78□□□□□ -0.52
MARK3-210ENST00000556463 CUL7Q14999 1698 aa11.78□□□□□ -0.52
MARK3-210ENST00000556463 WASHC2AQ641Q2 1341 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms