RNA–Protein interactions for RNA: ENST00000555955.3

SIX1-205, Transcript of SIX homeobox 1, humanhuman

TSL 2

Gene SIX1, Length 2,844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1-205ENST00000555955 GOLGA3Q08378 1498 aa20.27■□□□□ 0.84
SIX1-205ENST00000555955 EEA1Q15075 1411 aa20.23■□□□□ 0.83
SIX1-205ENST00000555955 ANP32CO43423 234 aa20.22■□□□□ 0.83
SIX1-205ENST00000555955 PKNOX2Q96KN3 472 aa20.22■□□□□ 0.83
SIX1-205ENST00000555955 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
SIX1-205ENST00000555955 PPP1R15AO75807 674 aaPredicted RBP20.21■□□□□ 0.83
SIX1-205ENST00000555955 CLIP1P30622 1438 aa20.21■□□□□ 0.83
SIX1-205ENST00000555955 PPP4R2Q9NY27 417 aa20.2■□□□□ 0.82
SIX1-205ENST00000555955 VPS8Q8N3P4 1428 aa20.2■□□□□ 0.82
SIX1-205ENST00000555955 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
SIX1-205ENST00000555955 HNRNPUQ00839 825 aaKnown RBP eCLIP20.12■□□□□ 0.81
SIX1-205ENST00000555955 B4GALNT3Q6L9W6 998 aa20.11■□□□□ 0.81
SIX1-205ENST00000555955 IPO9Q96P70 1041 aaKnown RBP20.08■□□□□ 0.81
SIX1-205ENST00000555955 ZBTB47Q9UFB7 747 aaPredicted RBP20.08■□□□□ 0.81
SIX1-205ENST00000555955 ANP32AP39687 249 aaKnown RBP20.08■□□□□ 0.8
SIX1-205ENST00000555955 HIRIP3Q9BW71 556 aaPredicted RBP20.06■□□□□ 0.8
SIX1-205ENST00000555955 CFTRP13569 1480 aa20.05■□□□□ 0.8
SIX1-205ENST00000555955 PLEKHG5O94827 1062 aa20.05■□□□□ 0.8
SIX1-205ENST00000555955 DNAJC5BQ9UF47 199 aa20.04■□□□□ 0.8
SIX1-205ENST00000555955 WASHC2AQ641Q2 1341 aa20.02■□□□□ 0.8
SIX1-205ENST00000555955 RANGAP1P46060 587 aaPredicted RBP20.01■□□□□ 0.79
SIX1-205ENST00000555955 TIMELESSQ9UNS1 1208 aa20.01■□□□□ 0.79
SIX1-205ENST00000555955 WDR97A6NE52 1622 aa20■□□□□ 0.79
SIX1-205ENST00000555955 LAMC3Q9Y6N6 1575 aa20■□□□□ 0.79
SIX1-205ENST00000555955 CEP164Q9UPV0 1460 aa19.99■□□□□ 0.79
SIX1-205ENST00000555955 C11orf95C9JLR9 678 aaPredicted RBP19.98■□□□□ 0.79
SIX1-205ENST00000555955 BRPF3Q9ULD4 1205 aa19.96■□□□□ 0.79
SIX1-205ENST00000555955 CUX2O14529 1486 aa19.95■□□□□ 0.78
SIX1-205ENST00000555955 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.78
SIX1-205ENST00000555955 MAPKBP1O60336 1514 aa19.93■□□□□ 0.78
SIX1-205ENST00000555955 NEFMP07197 916 aa19.92■□□□□ 0.78
SIX1-205ENST00000555955 WASHC2CQ9Y4E1 1318 aa19.92■□□□□ 0.78
SIX1-205ENST00000555955 SIN3AQ96ST3 1273 aa19.91■□□□□ 0.78
SIX1-205ENST00000555955 KANK4Q5T7N3 995 aaPredicted RBP19.9■□□□□ 0.78
SIX1-205ENST00000555955 USP35Q9P2H5 1018 aa19.9■□□□□ 0.78
SIX1-205ENST00000555955 KIF21BO75037 1637 aa19.89■□□□□ 0.78
SIX1-205ENST00000555955 RRBP1Q9P2E9 1410 aaKnown RBP19.88■□□□□ 0.77
SIX1-205ENST00000555955 LAS1LQ9Y4W2 734 aaKnown RBP19.87■□□□□ 0.77
SIX1-205ENST00000555955 RAB3GAP2Q9H2M9 1393 aa19.87■□□□□ 0.77
SIX1-205ENST00000555955 PODXL2Q9NZ53 605 aa19.84■□□□□ 0.77
SIX1-205ENST00000555955 CCNB3Q8WWL7 1395 aa19.82■□□□□ 0.76
SIX1-205ENST00000555955 RSPH6AQ9H0K4 717 aa19.79■□□□□ 0.76
SIX1-205ENST00000555955 BIVM-ERCC5R4GMW8 1640 aa19.79■□□□□ 0.76
SIX1-205ENST00000555955 NESP48681 1621 aa19.78■□□□□ 0.76
SIX1-205ENST00000555955 ZMYND15Q9H091 742 aa19.77■□□□□ 0.76
SIX1-205ENST00000555955 VSIG10Q8N0Z9 540 aa19.77■□□□□ 0.76
SIX1-205ENST00000555955 RAPGEF2Q9Y4G8 1499 aa19.76■□□□□ 0.75
SIX1-205ENST00000555955 NPM2Q86SE8 214 aaKnown RBP19.75■□□□□ 0.75
SIX1-205ENST00000555955 GSE1Q14687 1217 aa19.74■□□□□ 0.75
SIX1-205ENST00000555955 FANCD2Q9BXW9 1451 aa19.73■□□□□ 0.75
SIX1-205ENST00000555955 PPM1GO15355 546 aaPredicted RBP19.73■□□□□ 0.75
SIX1-205ENST00000555955 KIF21AQ7Z4S6 1674 aa19.73■□□□□ 0.75
SIX1-205ENST00000555955 TOP2BQ02880 1626 aa19.73■□□□□ 0.75
SIX1-205ENST00000555955 GLIPR1L2Q4G1C9 344 aa19.72■□□□□ 0.75
SIX1-205ENST00000555955 SYNJ1O43426 1573 aa19.71■□□□□ 0.75
SIX1-205ENST00000555955 PDS5BQ9NTI5 1447 aa19.7■□□□□ 0.74
SIX1-205ENST00000555955 SLC24A1O60721 1099 aa19.68■□□□□ 0.74
SIX1-205ENST00000555955 SETD5Q9C0A6 1442 aa19.68■□□□□ 0.74
SIX1-205ENST00000555955 FAM9BQ8IZU0 186 aa19.66■□□□□ 0.74
SIX1-205ENST00000555955 CCDC184Q52MB2 194 aa19.66■□□□□ 0.74
SIX1-205ENST00000555955 ZBED9Q6R2W3 1325 aa19.66■□□□□ 0.74
SIX1-205ENST00000555955 CUX1P39880 1505 aa19.66■□□□□ 0.74
SIX1-205ENST00000555955 DNMBPQ6XZF7 1577 aa19.64■□□□□ 0.73
SIX1-205ENST00000555955 ARAP1Q96P48 1450 aa19.62■□□□□ 0.73
SIX1-205ENST00000555955 FAM43AQ8N2R8 423 aa19.61■□□□□ 0.73
SIX1-205ENST00000555955 FRAT1Q92837 279 aaPredicted RBP19.61■□□□□ 0.73
SIX1-205ENST00000555955 AKNAQ7Z591 1439 aa19.57■□□□□ 0.72
SIX1-205ENST00000555955 TONSLQ96HA7 1378 aa19.55■□□□□ 0.72
SIX1-205ENST00000555955 MRS2Q9HD23 443 aa19.55■□□□□ 0.72
SIX1-205ENST00000555955 THOC2Q8NI27 1593 aaKnown RBP19.55■□□□□ 0.72
SIX1-205ENST00000555955 NFKBIBQ15653 356 aa19.54■□□□□ 0.72
SIX1-205ENST00000555955 URB2Q14146 1524 aaKnown RBP19.54■□□□□ 0.72
SIX1-205ENST00000555955 TOPBP1Q92547 1522 aa19.54■□□□□ 0.72
SIX1-205ENST00000555955 MRC2Q9UBG0 1479 aa19.53■□□□□ 0.72
SIX1-205ENST00000555955 PDE4AP27815 886 aa19.53■□□□□ 0.72
SIX1-205ENST00000555955 WDR62O43379 1518 aa19.53■□□□□ 0.72
SIX1-205ENST00000555955 TCERG1O14776 1098 aaKnown RBP19.49■□□□□ 0.71
SIX1-205ENST00000555955 RNF123Q5XPI4 1314 aa19.48■□□□□ 0.71
SIX1-205ENST00000555955 BACH2Q9BYV9 841 aa19.47■□□□□ 0.71
SIX1-205ENST00000555955 SMG6Q86US8 1419 aaKnown RBP19.47■□□□□ 0.71
SIX1-205ENST00000555955 PRKRIP1Q9H875 184 aaPredicted RBP19.47■□□□□ 0.71
SIX1-205ENST00000555955 DCAF11Q8TEB1 546 aa19.46■□□□□ 0.71
SIX1-205ENST00000555955 FAM50AQ14320 339 aaKnown RBP19.45■□□□□ 0.7
SIX1-205ENST00000555955 DAXXQ9UER7 740 aaPredicted RBP19.45■□□□□ 0.7
SIX1-205ENST00000555955 NUDCQ9Y266 331 aa19.45■□□□□ 0.7
SIX1-205ENST00000555955 A0A0U1RQG5 324 aaPredicted RBP19.44■□□□□ 0.7
SIX1-205ENST00000555955 DDRGK1Q96HY6 314 aa19.43■□□□□ 0.7
SIX1-205ENST00000555955 FGD5Q6ZNL6 1462 aa19.43■□□□□ 0.7
SIX1-205ENST00000555955 FHAD1B1AJZ9 1412 aa19.43■□□□□ 0.7
SIX1-205ENST00000555955 POLA1P09884 1462 aaPredicted RBP19.4■□□□□ 0.7
SIX1-205ENST00000555955 ERCC6Q03468 1493 aa19.4■□□□□ 0.7
SIX1-205ENST00000555955 CNTLNQ9NXG0 1405 aa19.4■□□□□ 0.7
SIX1-205ENST00000555955 HSPA5P11021 654 aaKnown RBP19.39■□□□□ 0.7
SIX1-205ENST00000555955 HSP90AA2PQ14568 343 aaPredicted RBP19.38■□□□□ 0.69
SIX1-205ENST00000555955 MS4A1P11836 297 aa19.38■□□□□ 0.69
SIX1-205ENST00000555955 SLC4A3P48751 1232 aa19.38■□□□□ 0.69
SIX1-205ENST00000555955 TARBP1Q13395 1621 aaKnown RBP19.37■□□□□ 0.69
SIX1-205ENST00000555955 SENP3-EIF4A1A0A087X0R7 540 aa19.37■□□□□ 0.69
SIX1-205ENST00000555955 ABCA10Q8WWZ4 1543 aa19.35■□□□□ 0.69
SIX1-205ENST00000555955 RRAGDQ9NQL2 400 aaPredicted RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms