RNA–Protein interactions for RNA: ENST00000555955.3

SIX1-205, Transcript of SIX homeobox 1, humanhuman

TSL 2

Gene SIX1, Length 2,844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1-205ENST00000555955 NISCHQ9Y2I1 1504 aa27.25■■□□□ 1.95
SIX1-205ENST00000555955 HRCP23327 699 aa24.9■■□□□ 1.58
SIX1-205ENST00000555955 PELP1Q8IZL8 1130 aaKnown RBP24.88■■□□□ 1.57
SIX1-205ENST00000555955 PPARGC1BQ86YN6 1023 aaKnown RBP24.44■■□□□ 1.5
SIX1-205ENST00000555955 PCGF6Q9BYE7 350 aa24.14■■□□□ 1.46
SIX1-205ENST00000555955 CCDC180Q9P1Z9 1646 aa24.12■■□□□ 1.45
SIX1-205ENST00000555955 MYT1Q01538 1121 aa24.09■■□□□ 1.45
SIX1-205ENST00000555955 SCAF1Q9H7N4 1312 aaKnown RBP23.91■■□□□ 1.42
SIX1-205ENST00000555955 MYO15BQ96JP2 1530 aa23.6■■□□□ 1.37
SIX1-205ENST00000555955 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
SIX1-205ENST00000555955 SHROOM4Q9ULL8 1493 aa23.38■■□□□ 1.33
SIX1-205ENST00000555955 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
SIX1-205ENST00000555955 DCAF1Q9Y4B6 1507 aa23.24■■□□□ 1.31
SIX1-205ENST00000555955 ZEB1P37275 1124 aaPredicted RBP23.21■■□□□ 1.31
SIX1-205ENST00000555955 TRIM26Q12899 539 aaPredicted RBP23.19■■□□□ 1.3
SIX1-205ENST00000555955 ACIN1Q9UKV3 1341 aaKnown RBP23.12■■□□□ 1.29
SIX1-205ENST00000555955 NEUROD1Q13562 356 aa23.02■■□□□ 1.28
SIX1-205ENST00000555955 GTF3C3Q9Y5Q9 886 aa22.98■■□□□ 1.27
SIX1-205ENST00000555955 ZCCHC6Q5VYS8 1495 aaKnown RBP22.9■■□□□ 1.26
SIX1-205ENST00000555955 LOC105371045A0A1W2PR82 267 aa22.9■■□□□ 1.26
SIX1-205ENST00000555955 CENPBP07199 599 aaPredicted RBP22.77■■□□□ 1.23
SIX1-205ENST00000555955 TTBK1Q5TCY1 1321 aaPredicted RBP22.74■■□□□ 1.23
SIX1-205ENST00000555955 BCL11AQ9H165 835 aa22.64■■□□□ 1.22
SIX1-205ENST00000555955 ABCC9O60706 1549 aa22.58■■□□□ 1.21
SIX1-205ENST00000555955 FAM9AQ8IZU1 332 aaPredicted RBP22.5■■□□□ 1.19
SIX1-205ENST00000555955 DIEXFQ68CQ4 756 aaKnown RBP22.44■■□□□ 1.18
SIX1-205ENST00000555955 NACADO15069 1562 aa22.4■■□□□ 1.18
SIX1-205ENST00000555955 PRKCSHP14314 528 aaPredicted RBP22.29■■□□□ 1.16
SIX1-205ENST00000555955 RB1CC1Q8TDY2 1594 aa22.22■■□□□ 1.15
SIX1-205ENST00000555955 YTHDC1Q96MU7 727 aaKnown RBP22.19■■□□□ 1.14
SIX1-205ENST00000555955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
SIX1-205ENST00000555955 CCER1Q8TC90 406 aaPredicted RBP22.16■■□□□ 1.14
SIX1-205ENST00000555955 ANP32EQ9BTT0 268 aa22.11■■□□□ 1.13
SIX1-205ENST00000555955 TRIM41Q8WV44 630 aa22■■□□□ 1.11
SIX1-205ENST00000555955 CSRNP3Q8WYN3 585 aa22■■□□□ 1.11
SIX1-205ENST00000555955 DCAF8L2P0C7V8 631 aa21.98■■□□□ 1.11
SIX1-205ENST00000555955 ZNF316A6NFI3 1004 aaPredicted RBP21.85■■□□□ 1.09
SIX1-205ENST00000555955 UNC13AQ9UPW8 1703 aa21.85■■□□□ 1.09
SIX1-205ENST00000555955 SCRIBQ14160 1630 aa21.82■■□□□ 1.08
SIX1-205ENST00000555955 MIER1Q8N108 512 aa21.8■■□□□ 1.08
SIX1-205ENST00000555955 TSHZ2Q9NRE2 1034 aa21.77■■□□□ 1.08
SIX1-205ENST00000555955 EHMT2Q96KQ7 1210 aa21.75■■□□□ 1.07
SIX1-205ENST00000555955 SUPT16HQ9Y5B9 1047 aaKnown RBP21.71■■□□□ 1.07
SIX1-205ENST00000555955 CLSPNQ9HAW4 1339 aa21.64■■□□□ 1.05
SIX1-205ENST00000555955 BICRAQ9NZM4 1560 aa21.57■■□□□ 1.04
SIX1-205ENST00000555955 ERICH6Q7L0X2 663 aa21.56■■□□□ 1.04
SIX1-205ENST00000555955 APLP2Q06481 763 aa21.34■■□□□ 1.01
SIX1-205ENST00000555955 BCANQ96GW7 911 aa21.26■□□□□ 0.99
SIX1-205ENST00000555955 ANO8Q9HCE9 1232 aaPredicted RBP21.26■□□□□ 0.99
SIX1-205ENST00000555955 RBM19Q9Y4C8 960 aaKnown RBP21.23■□□□□ 0.99
SIX1-205ENST00000555955 BAZ1AQ9NRL2 1556 aaPredicted RBP21.09■□□□□ 0.97
SIX1-205ENST00000555955 MSH5O43196 834 aa21.08■□□□□ 0.96
SIX1-205ENST00000555955 PABPN1Q86U42 306 aaKnown RBP eCLIP21.07■□□□□ 0.96
SIX1-205ENST00000555955 SMARCA4P51532 1647 aa21.05■□□□□ 0.96
SIX1-205ENST00000555955 CECR2Q9BXF3 1484 aa21.04■□□□□ 0.96
SIX1-205ENST00000555955 FKBP8Q14318 412 aa21.04■□□□□ 0.96
SIX1-205ENST00000555955 WRNQ14191 1432 aaPredicted RBP eCLIP21.04■□□□□ 0.96
SIX1-205ENST00000555955 RSF1Q96T23 1441 aaPredicted RBP20.99■□□□□ 0.95
SIX1-205ENST00000555955 MROH2BQ7Z745 1585 aa20.96■□□□□ 0.95
SIX1-205ENST00000555955 HNRNPUL2Q1KMD3 747 aaKnown RBP20.94■□□□□ 0.94
SIX1-205ENST00000555955 SALL2Q9Y467 1007 aaPredicted RBP20.94■□□□□ 0.94
SIX1-205ENST00000555955 PEG3Q9GZU2 1588 aa20.94■□□□□ 0.94
SIX1-205ENST00000555955 CCDC136Q96JN2 1154 aa20.93■□□□□ 0.94
SIX1-205ENST00000555955 ITGAEP38570 1179 aa20.91■□□□□ 0.94
SIX1-205ENST00000555955 DEKP35659 375 aaKnown RBP20.91■□□□□ 0.94
SIX1-205ENST00000555955 MYT1LQ9UL68 1186 aa20.9■□□□□ 0.94
SIX1-205ENST00000555955 EIF4G1Q04637 1599 aaKnown RBP20.88■□□□□ 0.93
SIX1-205ENST00000555955 NEFLP07196 543 aa20.84■□□□□ 0.93
SIX1-205ENST00000555955 KCNH8Q96L42 1107 aa20.83■□□□□ 0.93
SIX1-205ENST00000555955 FANCIQ9NVI1 1328 aa20.83■□□□□ 0.93
SIX1-205ENST00000555955 CEP162Q5TB80 1403 aa20.83■□□□□ 0.93
SIX1-205ENST00000555955 WIZO95785 1651 aa20.8■□□□□ 0.92
SIX1-205ENST00000555955 SMARCA2P51531 1590 aa20.75■□□□□ 0.91
SIX1-205ENST00000555955 TOP2AP11388 1531 aaKnown RBP20.69■□□□□ 0.9
SIX1-205ENST00000555955 ATAD2BQ9ULI0 1458 aa20.68■□□□□ 0.9
SIX1-205ENST00000555955 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.68■□□□□ 0.9
SIX1-205ENST00000555955 HMGXB3Q12766 1538 aa20.66■□□□□ 0.9
SIX1-205ENST00000555955 ERICH6BQ5W0A0 696 aa20.66■□□□□ 0.9
SIX1-205ENST00000555955 UBE2Q2Q8WVN8 375 aa20.64■□□□□ 0.89
SIX1-205ENST00000555955 TNIKQ9UKE5 1360 aa20.63■□□□□ 0.89
SIX1-205ENST00000555955 CDK11AQ9UQ88 783 aaPredicted RBP20.62■□□□□ 0.89
SIX1-205ENST00000555955 CC2D2AQ9P2K1 1620 aa20.61■□□□□ 0.89
SIX1-205ENST00000555955 RTN4Q9NQC3 1192 aaKnown RBP20.61■□□□□ 0.89
SIX1-205ENST00000555955 NCAPD3P42695 1498 aa20.6■□□□□ 0.89
SIX1-205ENST00000555955 NBR1Q14596 966 aa20.59■□□□□ 0.89
SIX1-205ENST00000555955 UBTFP17480 764 aaKnown RBP20.56■□□□□ 0.88
SIX1-205ENST00000555955 IL27Q8NEV9 243 aa20.54■□□□□ 0.88
SIX1-205ENST00000555955 BAZ1BQ9UIG0 1483 aaKnown RBP20.51■□□□□ 0.87
SIX1-205ENST00000555955 TRIM52Q96A61 297 aa20.51■□□□□ 0.87
SIX1-205ENST00000555955 DHX57Q6P158 1386 aaKnown RBP20.51■□□□□ 0.87
SIX1-205ENST00000555955 DDX10Q13206 875 aaKnown RBP20.4■□□□□ 0.86
SIX1-205ENST00000555955 NOP58Q9Y2X3 529 aaKnown RBP20.4■□□□□ 0.86
SIX1-205ENST00000555955 CCDC88BA6NC98 1476 aa20.38■□□□□ 0.85
SIX1-205ENST00000555955 ABCC8Q09428 1581 aa20.38■□□□□ 0.85
SIX1-205ENST00000555955 IRX6P78412 446 aaPredicted RBP20.37■□□□□ 0.85
SIX1-205ENST00000555955 SOGA1O94964 1423 aa20.37■□□□□ 0.85
SIX1-205ENST00000555955 PAK3O75914 559 aaPredicted RBP20.33■□□□□ 0.84
SIX1-205ENST00000555955 RTL5Q5HYW3 569 aaPredicted RBP20.31■□□□□ 0.84
SIX1-205ENST00000555955 EIF5BO60841 1220 aaKnown RBP20.3■□□□□ 0.84
SIX1-205ENST00000555955 CCER2I3L3R5 266 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms