RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 ARHGEF11O15085 1522 aa17.9■□□□□ 0.46
SHMT2-218ENST00000555213 IQGAP2Q13576 1575 aa17.9■□□□□ 0.46
SHMT2-218ENST00000555213 RIMBP3CA6NJZ7 1639 aa17.88■□□□□ 0.45
SHMT2-218ENST00000555213 RIMBP3BA6NNM3 1639 aa17.88■□□□□ 0.45
SHMT2-218ENST00000555213 SHROOM2Q13796 1616 aa17.88■□□□□ 0.45
SHMT2-218ENST00000555213 RIMBP3Q9UFD9 1639 aa17.88■□□□□ 0.45
SHMT2-218ENST00000555213 GOLGA3Q08378 1498 aa17.87■□□□□ 0.45
SHMT2-218ENST00000555213 CTTNBP2Q8WZ74 1663 aa17.87■□□□□ 0.45
SHMT2-218ENST00000555213 JPH4Q96JJ6 628 aa17.84■□□□□ 0.45
SHMT2-218ENST00000555213 PRG4Q92954 1404 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-218ENST00000555213 CARMIL2Q6F5E8 1435 aa17.79■□□□□ 0.44
SHMT2-218ENST00000555213 UGGT2Q9NYU1 1516 aa17.78■□□□□ 0.44
SHMT2-218ENST00000555213 UBTFP17480 764 aaKnown RBP17.77■□□□□ 0.44
SHMT2-218ENST00000555213 EHMT2Q96KQ7 1210 aa17.76■□□□□ 0.43
SHMT2-218ENST00000555213 ARAP1Q96P48 1450 aa17.75■□□□□ 0.43
SHMT2-218ENST00000555213 ERCC6L2Q5T890 1561 aa17.75■□□□□ 0.43
SHMT2-218ENST00000555213 LOC105371045A0A1W2PR82 267 aa17.73■□□□□ 0.43
SHMT2-218ENST00000555213 KIAA0556O60303 1618 aa17.71■□□□□ 0.43
SHMT2-218ENST00000555213 DISP1Q96F81 1524 aa17.71■□□□□ 0.43
SHMT2-218ENST00000555213 CYB5RLQ6IPT4 315 aa17.69■□□□□ 0.42
SHMT2-218ENST00000555213 TNIKQ9UKE5 1360 aa17.68■□□□□ 0.42
SHMT2-218ENST00000555213 EFCAB5A4FU69 1503 aa17.67■□□□□ 0.42
SHMT2-218ENST00000555213 PTPRGP23470 1445 aa17.65■□□□□ 0.42
SHMT2-218ENST00000555213 SAMD9Q5K651 1589 aa17.65■□□□□ 0.42
SHMT2-218ENST00000555213 RANGAP1P46060 587 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-218ENST00000555213 TTBK1Q5TCY1 1321 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-218ENST00000555213 P3H3Q8IVL6 736 aa17.56■□□□□ 0.4
SHMT2-218ENST00000555213 TRHP20396 242 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-218ENST00000555213 FHOD3Q2V2M9 1422 aa17.55■□□□□ 0.4
SHMT2-218ENST00000555213 CLIP1P30622 1438 aa17.54■□□□□ 0.4
SHMT2-218ENST00000555213 UACAQ9BZF9 1416 aa17.54■□□□□ 0.4
SHMT2-218ENST00000555213 ARHGAP35Q9NRY4 1499 aa17.53■□□□□ 0.4
SHMT2-218ENST00000555213 ABCC2Q92887 1545 aa17.52■□□□□ 0.39
SHMT2-218ENST00000555213 UHRF1BP1LA0JNW5 1464 aa17.51■□□□□ 0.39
SHMT2-218ENST00000555213 ADCY10Q96PN6 1610 aa17.51■□□□□ 0.39
SHMT2-218ENST00000555213 CEP162Q5TB80 1403 aa17.5■□□□□ 0.39
SHMT2-218ENST00000555213 FMN1Q68DA7 1419 aa17.49■□□□□ 0.39
SHMT2-218ENST00000555213 NPM1P06748 294 aaKnown RBP eCLIP17.49■□□□□ 0.39
SHMT2-218ENST00000555213 PLB1Q6P1J6 1458 aa17.49■□□□□ 0.39
SHMT2-218ENST00000555213 ABCA8O94911 1581 aa17.48■□□□□ 0.39
SHMT2-218ENST00000555213 RAPGEF6Q8TEU7 1601 aa17.44■□□□□ 0.38
SHMT2-218ENST00000555213 KDM5BQ9UGL1 1544 aa17.42■□□□□ 0.38
SHMT2-218ENST00000555213 MAPKBP1O60336 1514 aa17.4■□□□□ 0.38
SHMT2-218ENST00000555213 AEBP2Q6ZN18 517 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-218ENST00000555213 HECW1Q76N89 1606 aa17.39■□□□□ 0.37
SHMT2-218ENST00000555213 ZCCHC11Q5TAX3 1644 aaKnown RBP17.38■□□□□ 0.37
SHMT2-218ENST00000555213 NUP153P49790 1475 aaKnown RBP17.37■□□□□ 0.37
SHMT2-218ENST00000555213 CASKIN1Q8WXD9 1431 aa17.35■□□□□ 0.37
SHMT2-218ENST00000555213 PCF11O94913 1555 aaKnown RBP17.35■□□□□ 0.37
SHMT2-218ENST00000555213 FYCO1Q9BQS8 1478 aa17.34■□□□□ 0.37
SHMT2-218ENST00000555213 ASXL2Q76L83 1435 aa17.33■□□□□ 0.36
SHMT2-218ENST00000555213 ARID3CA6NKF2 412 aa17.33■□□□□ 0.36
SHMT2-218ENST00000555213 ATP1B4Q9UN42 357 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-218ENST00000555213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-218ENST00000555213 HNRNPUL2Q1KMD3 747 aaKnown RBP17.32■□□□□ 0.36
SHMT2-218ENST00000555213 ATP10BO94823 1461 aa17.31■□□□□ 0.36
SHMT2-218ENST00000555213 WDR7Q9Y4E6 1490 aa17.31■□□□□ 0.36
SHMT2-218ENST00000555213 CCDC18Q5T9S5 1454 aa17.3■□□□□ 0.36
SHMT2-218ENST00000555213 EPRSP07814 1512 aaKnown RBP17.29■□□□□ 0.36
SHMT2-218ENST00000555213 VPS8Q8N3P4 1428 aa17.29■□□□□ 0.36
SHMT2-218ENST00000555213 ABCC10Q5T3U5 1492 aa17.27■□□□□ 0.36
SHMT2-218ENST00000555213 CDK13Q14004 1512 aaKnown RBP17.26■□□□□ 0.35
SHMT2-218ENST00000555213 DIP2BQ9P265 1576 aa17.25■□□□□ 0.35
SHMT2-218ENST00000555213 CDK11AQ9UQ88 783 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-218ENST00000555213 PLEKHD1A6NEE1 506 aa17.23■□□□□ 0.35
SHMT2-218ENST00000555213 FAM69CQ0P6D2 419 aa17.22■□□□□ 0.35
SHMT2-218ENST00000555213 GLI2P10070 1586 aa17.2■□□□□ 0.34
SHMT2-218ENST00000555213 KIF13AQ9H1H9 1805 aa17.18■□□□□ 0.34
SHMT2-218ENST00000555213 LRRIQ1Q96JM4 1722 aa17.18■□□□□ 0.34
SHMT2-218ENST00000555213 KCNH8Q96L42 1107 aa17.17■□□□□ 0.34
SHMT2-218ENST00000555213 TROQ12816 1431 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-218ENST00000555213 KIF14Q15058 1648 aa17.14■□□□□ 0.33
SHMT2-218ENST00000555213 CFAP43Q8NDM7 1665 aa17.13■□□□□ 0.33
SHMT2-218ENST00000555213 APLP2Q06481 763 aa17.13■□□□□ 0.33
SHMT2-218ENST00000555213 TIAM1Q13009 1591 aa17.12■□□□□ 0.33
SHMT2-218ENST00000555213 MAP3K4Q9Y6R4 1608 aa17.12■□□□□ 0.33
SHMT2-218ENST00000555213 MTUS2Q5JR59 1369 aa17.12■□□□□ 0.33
SHMT2-218ENST00000555213 ABCA9Q8IUA7 1624 aa17.11■□□□□ 0.33
SHMT2-218ENST00000555213 MAP3K1Q13233 1512 aa17.11■□□□□ 0.33
SHMT2-218ENST00000555213 EHBP1L1Q8N3D4 1523 aa17.11■□□□□ 0.33
SHMT2-218ENST00000555213 CD109Q6YHK3 1445 aa17.1■□□□□ 0.33
SHMT2-218ENST00000555213 TEX14Q8IWB6 1497 aa17.1■□□□□ 0.33
SHMT2-218ENST00000555213 MAGI3Q5TCQ9 1506 aa17.08■□□□□ 0.32
SHMT2-218ENST00000555213 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.07■□□□□ 0.32
SHMT2-218ENST00000555213 TTC37Q6PGP7 1564 aa17.06■□□□□ 0.32
SHMT2-218ENST00000555213 TSPOAP1O95153 1857 aa17.05■□□□□ 0.32
SHMT2-218ENST00000555213 LRRC9Q6ZRR7 1453 aa17.03■□□□□ 0.32
SHMT2-218ENST00000555213 PPRC1Q5VV67 1664 aaKnown RBP17.01■□□□□ 0.31
SHMT2-218ENST00000555213 SUPT6HQ7KZ85 1726 aaKnown RBP17■□□□□ 0.31
SHMT2-218ENST00000555213 CFAP74Q9C0B2 1584 aa17■□□□□ 0.31
SHMT2-218ENST00000555213 MYO5CQ9NQX4 1742 aa17■□□□□ 0.31
SHMT2-218ENST00000555213 ARAP3Q8WWN8 1544 aa17■□□□□ 0.31
SHMT2-218ENST00000555213 NEO1Q92859 1461 aa16.99■□□□□ 0.31
SHMT2-218ENST00000555213 PLCH2O75038 1416 aa16.98■□□□□ 0.31
SHMT2-218ENST00000555213 PHLDB1Q86UU1 1377 aa16.98■□□□□ 0.31
SHMT2-218ENST00000555213 CCNB3Q8WWL7 1395 aa16.98■□□□□ 0.31
SHMT2-218ENST00000555213 FANCAO15360 1455 aa16.98■□□□□ 0.31
SHMT2-218ENST00000555213 ARHGAP5Q13017 1502 aa16.97■□□□□ 0.31
SHMT2-218ENST00000555213 PREX2Q70Z35 1606 aa16.96■□□□□ 0.31
SHMT2-218ENST00000555213 NCOA2Q15596 1464 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms