RNA–Protein interactions for RNA: ENST00000554180.5

TDP1-209, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-209ENST00000554180 CTTNBP2Q8WZ74 1663 aa12.25□□□□□ -0.45
TDP1-209ENST00000554180 KIAA0586Q9BVV6 1533 aa12.23□□□□□ -0.45
TDP1-209ENST00000554180 IQGAP2Q13576 1575 aa12.21□□□□□ -0.46
TDP1-209ENST00000554180 FBLN2P98095 1184 aa12.2□□□□□ -0.46
TDP1-209ENST00000554180 CEP170Q5SW79 1584 aa12.2□□□□□ -0.46
TDP1-209ENST00000554180 EFCAB5A4FU69 1503 aa12.2□□□□□ -0.46
TDP1-209ENST00000554180 CHD1O14646 1710 aa12.17□□□□□ -0.46
TDP1-209ENST00000554180 ARHGAP35Q9NRY4 1499 aa12.17□□□□□ -0.46
TDP1-209ENST00000554180 UGGT2Q9NYU1 1516 aa12.16□□□□□ -0.46
TDP1-209ENST00000554180 SAMD9Q5K651 1589 aa12.15□□□□□ -0.46
TDP1-209ENST00000554180 ARAP1Q96P48 1450 aa12.14□□□□□ -0.47
TDP1-209ENST00000554180 VPS8Q8N3P4 1428 aa12.12□□□□□ -0.47
TDP1-209ENST00000554180 CLASP1Q7Z460 1538 aa12.11□□□□□ -0.47
TDP1-209ENST00000554180 RANGAP1P46060 587 aaPredicted RBP12.1□□□□□ -0.47
TDP1-209ENST00000554180 KIAA0556O60303 1618 aa12.08□□□□□ -0.48
TDP1-209ENST00000554180 SHROOM2Q13796 1616 aa12.08□□□□□ -0.48
TDP1-209ENST00000554180 DISP1Q96F81 1524 aa12.08□□□□□ -0.48
TDP1-209ENST00000554180 JPH4Q96JJ6 628 aa12.08□□□□□ -0.48
TDP1-209ENST00000554180 FMN1Q68DA7 1419 aa12.08□□□□□ -0.48
TDP1-209ENST00000554180 CARMIL2Q6F5E8 1435 aa12.08□□□□□ -0.48
TDP1-209ENST00000554180 FHOD3Q2V2M9 1422 aa12.07□□□□□ -0.48
TDP1-209ENST00000554180 OSCARQ8IYS5 282 aa12.05□□□□□ -0.48
TDP1-209ENST00000554180 PRG4Q92954 1404 aaPredicted RBP12.03□□□□□ -0.48
TDP1-209ENST00000554180 CASKIN1Q8WXD9 1431 aa12.03□□□□□ -0.48
TDP1-209ENST00000554180 FYCO1Q9BQS8 1478 aa12.02□□□□□ -0.48
TDP1-209ENST00000554180 P3H3Q8IVL6 736 aa12.01□□□□□ -0.49
TDP1-209ENST00000554180 PCF11O94913 1555 aaKnown RBP12□□□□□ -0.49
TDP1-209ENST00000554180 MAP3K1Q13233 1512 aa11.99□□□□□ -0.49
TDP1-209ENST00000554180 AEBP2Q6ZN18 517 aaPredicted RBP11.98□□□□□ -0.49
TDP1-209ENST00000554180 APLP2Q06481 763 aa11.96□□□□□ -0.49
TDP1-209ENST00000554180 HECW1Q76N89 1606 aa11.96□□□□□ -0.5
TDP1-209ENST00000554180 PTPRGP23470 1445 aa11.95□□□□□ -0.5
TDP1-209ENST00000554180 CCDC18Q5T9S5 1454 aa11.95□□□□□ -0.5
TDP1-209ENST00000554180 RAPGEF6Q8TEU7 1601 aa11.93□□□□□ -0.5
TDP1-209ENST00000554180 ABCA8O94911 1581 aa11.92□□□□□ -0.5
TDP1-209ENST00000554180 TIAM1Q13009 1591 aa11.92□□□□□ -0.5
TDP1-209ENST00000554180 ERCC6L2Q5T890 1561 aa11.92□□□□□ -0.5
TDP1-209ENST00000554180 CFAP43Q8NDM7 1665 aa11.92□□□□□ -0.5
TDP1-209ENST00000554180 NUP153P49790 1475 aaKnown RBP11.91□□□□□ -0.5
TDP1-209ENST00000554180 PLB1Q6P1J6 1458 aa11.9□□□□□ -0.5
TDP1-209ENST00000554180 EPRSP07814 1512 aaKnown RBP11.9□□□□□ -0.5
TDP1-209ENST00000554180 UACAQ9BZF9 1416 aa11.89□□□□□ -0.51
TDP1-209ENST00000554180 UHRF1BP1LA0JNW5 1464 aa11.88□□□□□ -0.51
TDP1-209ENST00000554180 LRRC9Q6ZRR7 1453 aa11.88□□□□□ -0.51
TDP1-209ENST00000554180 ABCC2Q92887 1545 aa11.87□□□□□ -0.51
TDP1-209ENST00000554180 DNAJC5Q9H3Z4 198 aa11.87□□□□□ -0.51
TDP1-209ENST00000554180 ATP1B4Q9UN42 357 aaPredicted RBP11.87□□□□□ -0.51
TDP1-209ENST00000554180 ARHGEF11O15085 1522 aa11.86□□□□□ -0.51
TDP1-209ENST00000554180 TTBK1Q5TCY1 1321 aaPredicted RBP11.86□□□□□ -0.51
TDP1-209ENST00000554180 EHBP1L1Q8N3D4 1523 aa11.85□□□□□ -0.51
TDP1-209ENST00000554180 LRRIQ1Q96JM4 1722 aa11.84□□□□□ -0.51
TDP1-209ENST00000554180 CDK13Q14004 1512 aaKnown RBP11.84□□□□□ -0.51
TDP1-209ENST00000554180 MTUS2Q5JR59 1369 aa11.83□□□□□ -0.52
TDP1-209ENST00000554180 KANK4Q5T7N3 995 aaPredicted RBP11.83□□□□□ -0.52
TDP1-209ENST00000554180 CDK11AQ9UQ88 783 aaPredicted RBP11.83□□□□□ -0.52
TDP1-209ENST00000554180 ATP10BO94823 1461 aa11.82□□□□□ -0.52
TDP1-209ENST00000554180 KDM5BQ9UGL1 1544 aa11.81□□□□□ -0.52
TDP1-209ENST00000554180 TROQ12816 1431 aaPredicted RBP11.79□□□□□ -0.52
TDP1-209ENST00000554180 TRIM26Q12899 539 aaPredicted RBP11.79□□□□□ -0.52
TDP1-209ENST00000554180 PPARGC1BQ86YN6 1023 aaKnown RBP11.79□□□□□ -0.52
TDP1-209ENST00000554180 MAGI3Q5TCQ9 1506 aa11.79□□□□□ -0.52
TDP1-209ENST00000554180 RIMBP3CA6NJZ7 1639 aa11.78□□□□□ -0.52
TDP1-209ENST00000554180 RIMBP3BA6NNM3 1639 aa11.78□□□□□ -0.52
TDP1-209ENST00000554180 ADCY10Q96PN6 1610 aa11.78□□□□□ -0.52
TDP1-209ENST00000554180 RIMBP3Q9UFD9 1639 aa11.78□□□□□ -0.52
TDP1-209ENST00000554180 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.77□□□□□ -0.53
TDP1-209ENST00000554180 HNRNPUL2Q1KMD3 747 aaKnown RBP11.77□□□□□ -0.53
TDP1-209ENST00000554180 SUPT6HQ7KZ85 1726 aaKnown RBP11.77□□□□□ -0.53
TDP1-209ENST00000554180 ARID3CA6NKF2 412 aa11.76□□□□□ -0.53
TDP1-209ENST00000554180 NCOA2Q15596 1464 aa11.76□□□□□ -0.53
TDP1-209ENST00000554180 PLEKHD1A6NEE1 506 aa11.75□□□□□ -0.53
TDP1-209ENST00000554180 ZCCHC11Q5TAX3 1644 aaKnown RBP11.75□□□□□ -0.53
TDP1-209ENST00000554180 RRBP1Q9P2E9 1410 aaKnown RBP11.74□□□□□ -0.53
TDP1-209ENST00000554180 PHLDB1Q86UU1 1377 aa11.73□□□□□ -0.53
TDP1-209ENST00000554180 KIF14Q15058 1648 aa11.72□□□□□ -0.53
TDP1-209ENST00000554180 MYOM3Q5VTT5 1437 aa11.72□□□□□ -0.53
TDP1-209ENST00000554180 WDR7Q9Y4E6 1490 aa11.7□□□□□ -0.54
TDP1-209ENST00000554180 CCNB3Q8WWL7 1395 aa11.7□□□□□ -0.54
TDP1-209ENST00000554180 FGD6Q6ZV73 1430 aa11.69□□□□□ -0.54
TDP1-209ENST00000554180 MIA2Q96PC5 1412 aa11.69□□□□□ -0.54
TDP1-209ENST00000554180 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.69□□□□□ -0.54
TDP1-209ENST00000554180 NPM1P06748 294 aaKnown RBP eCLIP11.69□□□□□ -0.54
TDP1-209ENST00000554180 ABCC10Q5T3U5 1492 aa11.69□□□□□ -0.54
TDP1-209ENST00000554180 CYB5RLQ6IPT4 315 aa11.68□□□□□ -0.54
TDP1-209ENST00000554180 ASXL2Q76L83 1435 aa11.68□□□□□ -0.54
TDP1-209ENST00000554180 MAPKBP1O60336 1514 aa11.67□□□□□ -0.54
TDP1-209ENST00000554180 PCGF6Q9BYE7 350 aa11.66□□□□□ -0.54
TDP1-209ENST00000554180 ITSN2Q9NZM3 1697 aa11.65□□□□□ -0.54
TDP1-209ENST00000554180 TCOF1Q13428 1488 aaKnown RBP11.65□□□□□ -0.54
TDP1-209ENST00000554180 GPATCH8Q9UKJ3 1502 aaKnown RBP11.65□□□□□ -0.55
TDP1-209ENST00000554180 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.64□□□□□ -0.55
TDP1-209ENST00000554180 TTC37Q6PGP7 1564 aa11.62□□□□□ -0.55
TDP1-209ENST00000554180 ARAP3Q8WWN8 1544 aa11.62□□□□□ -0.55
TDP1-209ENST00000554180 PREX2Q70Z35 1606 aa11.61□□□□□ -0.55
TDP1-209ENST00000554180 ABCA9Q8IUA7 1624 aa11.61□□□□□ -0.55
TDP1-209ENST00000554180 PTPN23Q9H3S7 1636 aa11.61□□□□□ -0.55
TDP1-209ENST00000554180 CFDP1Q9UEE9 299 aaPredicted RBP11.6□□□□□ -0.55
TDP1-209ENST00000554180 PLCH2O75038 1416 aa11.6□□□□□ -0.55
TDP1-209ENST00000554180 FAM50AQ14320 339 aaKnown RBP11.59□□□□□ -0.55
TDP1-209ENST00000554180 KCNH8Q96L42 1107 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms