RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 MTUS2Q5JR59 1369 aa20.77■□□□□ 0.92
ARHGEF40-202ENST00000553709 NCAPD3P42695 1498 aa20.77■□□□□ 0.92
ARHGEF40-202ENST00000553709 SCAF1Q9H7N4 1312 aaKnown RBP20.77■□□□□ 0.91
ARHGEF40-202ENST00000553709 ERCC6Q03468 1493 aa20.77■□□□□ 0.91
ARHGEF40-202ENST00000553709 SLC24A1O60721 1099 aa20.76■□□□□ 0.91
ARHGEF40-202ENST00000553709 TMC1Q8TDI8 760 aa20.71■□□□□ 0.91
ARHGEF40-202ENST00000553709 CARMIL1Q5VZK9 1371 aa20.71■□□□□ 0.91
ARHGEF40-202ENST00000553709 BICRAQ9NZM4 1560 aa20.7■□□□□ 0.9
ARHGEF40-202ENST00000553709 NPM1P06748 294 aaKnown RBP eCLIP20.69■□□□□ 0.9
ARHGEF40-202ENST00000553709 CHGAP10645 457 aaKnown RBP20.68■□□□□ 0.9
ARHGEF40-202ENST00000553709 MRS2Q9HD23 443 aa20.68■□□□□ 0.9
ARHGEF40-202ENST00000553709 ESF1Q9H501 851 aaKnown RBP20.68■□□□□ 0.9
ARHGEF40-202ENST00000553709 SALL2Q9Y467 1007 aaPredicted RBP20.67■□□□□ 0.9
ARHGEF40-202ENST00000553709 CCDC136Q96JN2 1154 aa20.65■□□□□ 0.9
ARHGEF40-202ENST00000553709 TSPY4P0CV99 314 aa20.64■□□□□ 0.9
ARHGEF40-202ENST00000553709 TSPY10P0CW01 314 aa20.64■□□□□ 0.9
ARHGEF40-202ENST00000553709 HIRIP3Q9BW71 556 aaPredicted RBP20.63■□□□□ 0.89
ARHGEF40-202ENST00000553709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.63■□□□□ 0.891e-6■■□□□ 13.1
ARHGEF40-202ENST00000553709 EIF4G2P78344 907 aaKnown RBP eCLIP20.6■□□□□ 0.89
ARHGEF40-202ENST00000553709 KDM2AQ9Y2K7 1162 aa20.59■□□□□ 0.89
ARHGEF40-202ENST00000553709 UPF2Q9HAU5 1272 aaKnown RBP20.58■□□□□ 0.89
ARHGEF40-202ENST00000553709 RRP7BPQ9NSQ0 103 aa20.57■□□□□ 0.88
ARHGEF40-202ENST00000553709 FANCD2Q9BXW9 1451 aa20.56■□□□□ 0.88
ARHGEF40-202ENST00000553709 STAG3Q9UJ98 1225 aa20.56■□□□□ 0.88
ARHGEF40-202ENST00000553709 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.55■□□□□ 0.88
ARHGEF40-202ENST00000553709 WDR43Q15061 677 aaKnown RBP eCLIP20.54■□□□□ 0.88
ARHGEF40-202ENST00000553709 UNC13AQ9UPW8 1703 aa20.54■□□□□ 0.88
ARHGEF40-202ENST00000553709 HMGXB3Q12766 1538 aa20.54■□□□□ 0.88
ARHGEF40-202ENST00000553709 IRX6P78412 446 aaPredicted RBP20.51■□□□□ 0.87
ARHGEF40-202ENST00000553709 HSP90AA1P07900 732 aaKnown RBP20.51■□□□□ 0.87
ARHGEF40-202ENST00000553709 FHAD1B1AJZ9 1412 aa20.5■□□□□ 0.87
ARHGEF40-202ENST00000553709 VPS8Q8N3P4 1428 aa20.49■□□□□ 0.87
ARHGEF40-202ENST00000553709 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
ARHGEF40-202ENST00000553709 TDRD9Q8NDG6 1382 aaKnown RBP20.48■□□□□ 0.87
ARHGEF40-202ENST00000553709 ANP32BQ92688 251 aaKnown RBP20.44■□□□□ 0.86
ARHGEF40-202ENST00000553709 CC2D2AQ9P2K1 1620 aa20.43■□□□□ 0.86
ARHGEF40-202ENST00000553709 RAPGEF2Q9Y4G8 1499 aa20.43■□□□□ 0.86
ARHGEF40-202ENST00000553709 EIF5BO60841 1220 aaKnown RBP20.42■□□□□ 0.86
ARHGEF40-202ENST00000553709 NBR1Q14596 966 aa20.42■□□□□ 0.86
ARHGEF40-202ENST00000553709 CFTRP13569 1480 aa20.42■□□□□ 0.86
ARHGEF40-202ENST00000553709 PEG3Q9GZU2 1588 aa20.36■□□□□ 0.85
ARHGEF40-202ENST00000553709 PLEKHD1A6NEE1 506 aa20.36■□□□□ 0.85
ARHGEF40-202ENST00000553709 PLPPR3Q6T4P5 718 aa20.36■□□□□ 0.85
ARHGEF40-202ENST00000553709 FGD5Q6ZNL6 1462 aa20.35■□□□□ 0.85
ARHGEF40-202ENST00000553709 SYNJ1O43426 1573 aa20.3■□□□□ 0.84
ARHGEF40-202ENST00000553709 CFDP1Q9UEE9 299 aaPredicted RBP20.3■□□□□ 0.84
ARHGEF40-202ENST00000553709 SIN3AQ96ST3 1273 aa20.3■□□□□ 0.84
ARHGEF40-202ENST00000553709 RGL3Q3MIN7 710 aa20.28■□□□□ 0.84
ARHGEF40-202ENST00000553709 SUPT16HQ9Y5B9 1047 aaKnown RBP20.26■□□□□ 0.83
ARHGEF40-202ENST00000553709 FMN1Q68DA7 1419 aa20.26■□□□□ 0.83
ARHGEF40-202ENST00000553709 KCNH8Q96L42 1107 aa20.26■□□□□ 0.83
ARHGEF40-202ENST00000553709 CCNB3Q8WWL7 1395 aa20.26■□□□□ 0.83
ARHGEF40-202ENST00000553709 IGF1RP08069 1367 aa20.24■□□□□ 0.83
ARHGEF40-202ENST00000553709 CARD11Q9BXL7 1154 aa20.23■□□□□ 0.83
ARHGEF40-202ENST00000553709 TOP2BQ02880 1626 aa20.22■□□□□ 0.83
ARHGEF40-202ENST00000553709 KANK4Q5T7N3 995 aaPredicted RBP20.21■□□□□ 0.83
ARHGEF40-202ENST00000553709 RAD54L2Q9Y4B4 1467 aa20.21■□□□□ 0.83
ARHGEF40-202ENST00000553709 DDRGK1Q96HY6 314 aa20.2■□□□□ 0.82
ARHGEF40-202ENST00000553709 CDCA8Q53HL2 280 aa20.2■□□□□ 0.82
ARHGEF40-202ENST00000553709 MYH16Q9H6N6 1097 aa20.19■□□□□ 0.82
ARHGEF40-202ENST00000553709 CARMIL2Q6F5E8 1435 aa20.18■□□□□ 0.82
ARHGEF40-202ENST00000553709 KNSTRNQ9Y448 316 aa20.18■□□□□ 0.82
ARHGEF40-202ENST00000553709 SENP3-EIF4A1A0A087X0R7 540 aa20.17■□□□□ 0.82
ARHGEF40-202ENST00000553709 GAPVD1Q14C86 1478 aa20.17■□□□□ 0.82
ARHGEF40-202ENST00000553709 NESP48681 1621 aa20.17■□□□□ 0.82
ARHGEF40-202ENST00000553709 ARXQ96QS3 562 aa20.17■□□□□ 0.82
ARHGEF40-202ENST00000553709 KIF21BO75037 1637 aa20.16■□□□□ 0.82
ARHGEF40-202ENST00000553709 CUX1P39880 1505 aa20.15■□□□□ 0.82
ARHGEF40-202ENST00000553709 ARHGAP35Q9NRY4 1499 aa20.14■□□□□ 0.81
ARHGEF40-202ENST00000553709 TIMELESSQ9UNS1 1208 aa20.14■□□□□ 0.81
ARHGEF40-202ENST00000553709 FHOD3Q2V2M9 1422 aa20.14■□□□□ 0.81
ARHGEF40-202ENST00000553709 BECN1Q14457 450 aa20.14■□□□□ 0.81
ARHGEF40-202ENST00000553709 PPP4R2Q9NY27 417 aa20.13■□□□□ 0.81
ARHGEF40-202ENST00000553709 CFAP53Q96M91 514 aa20.12■□□□□ 0.81
ARHGEF40-202ENST00000553709 ANP32EQ9BTT0 268 aa20.11■□□□□ 0.81
ARHGEF40-202ENST00000553709 ERICH3Q5RHP9 1530 aa20.1■□□□□ 0.81
ARHGEF40-202ENST00000553709 SENP3Q9H4L4 574 aaPredicted RBP20.08■□□□□ 0.81
ARHGEF40-202ENST00000553709 PPP1R15AO75807 674 aaPredicted RBP20.08■□□□□ 0.8
ARHGEF40-202ENST00000553709 TOPBP1Q92547 1522 aa20.06■□□□□ 0.8
ARHGEF40-202ENST00000553709 GLIPR1L2Q4G1C9 344 aa20.06■□□□□ 0.8
ARHGEF40-202ENST00000553709 SETD5Q9C0A6 1442 aa20.06■□□□□ 0.8
ARHGEF40-202ENST00000553709 CCER2I3L3R5 266 aa20.03■□□□□ 0.8
ARHGEF40-202ENST00000553709 DNMBPQ6XZF7 1577 aa20.02■□□□□ 0.8
ARHGEF40-202ENST00000553709 MRC2Q9UBG0 1479 aa20.02■□□□□ 0.79
ARHGEF40-202ENST00000553709 LAMC3Q9Y6N6 1575 aa20.01■□□□□ 0.79
ARHGEF40-202ENST00000553709 PRXQ9BXM0 1461 aa20■□□□□ 0.79
ARHGEF40-202ENST00000553709 POLA1P09884 1462 aaPredicted RBP20■□□□□ 0.79
ARHGEF40-202ENST00000553709 JPH4Q96JJ6 628 aa19.98■□□□□ 0.79
ARHGEF40-202ENST00000553709 FTSJ3Q8IY81 847 aaKnown RBP19.98■□□□□ 0.79
ARHGEF40-202ENST00000553709 AQRO60306 1485 aaKnown RBP eCLIP19.97■□□□□ 0.791e-7■■■■□ 22.2
ARHGEF40-202ENST00000553709 PPM1GO15355 546 aaPredicted RBP19.97■□□□□ 0.79
ARHGEF40-202ENST00000553709 NEUROD2Q15784 382 aa19.97■□□□□ 0.79
ARHGEF40-202ENST00000553709 CC2D1BQ5T0F9 858 aaKnown RBP19.97■□□□□ 0.79
ARHGEF40-202ENST00000553709 DCAF11Q8TEB1 546 aa19.95■□□□□ 0.78
ARHGEF40-202ENST00000553709 B4GALNT3Q6L9W6 998 aa19.95■□□□□ 0.78
ARHGEF40-202ENST00000553709 GOLGA6L22H0YM25 854 aa19.94■□□□□ 0.78
ARHGEF40-202ENST00000553709 MAPK8IP3Q9UPT6 1336 aa19.93■□□□□ 0.78
ARHGEF40-202ENST00000553709 GRIN2BQ13224 1484 aa19.93■□□□□ 0.78
ARHGEF40-202ENST00000553709 HSPA5P11021 654 aaKnown RBP19.93■□□□□ 0.78
ARHGEF40-202ENST00000553709 C14orf37Q86TY3 774 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms