RNA–Protein interactions for RNA: ENST00000553405.1

MTHFD1-204, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 2

Gene MTHFD1, Length 833 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-204ENST00000553405 SHROOM2Q13796 1616 aa24.6■■□□□ 1.53
MTHFD1-204ENST00000553405 CTTNBP2Q8WZ74 1663 aa24.53■■□□□ 1.52
MTHFD1-204ENST00000553405 GOLGA3Q08378 1498 aa24.52■■□□□ 1.52
MTHFD1-204ENST00000553405 IQGAP2Q13576 1575 aa24.52■■□□□ 1.52
MTHFD1-204ENST00000553405 ARHGEF11O15085 1522 aa24.48■■□□□ 1.51
MTHFD1-204ENST00000553405 ERCC6L2Q5T890 1561 aa24.47■■□□□ 1.51
MTHFD1-204ENST00000553405 JPH4Q96JJ6 628 aa24.46■■□□□ 1.51
MTHFD1-204ENST00000553405 UGGT2Q9NYU1 1516 aa24.45■■□□□ 1.5
MTHFD1-204ENST00000553405 RIMBP3CA6NJZ7 1639 aa24.44■■□□□ 1.5
MTHFD1-204ENST00000553405 RIMBP3BA6NNM3 1639 aa24.44■■□□□ 1.5
MTHFD1-204ENST00000553405 RIMBP3Q9UFD9 1639 aa24.44■■□□□ 1.5
MTHFD1-204ENST00000553405 PRG4Q92954 1404 aaPredicted RBP24.4■■□□□ 1.5
MTHFD1-204ENST00000553405 DISP1Q96F81 1524 aa24.39■■□□□ 1.49
MTHFD1-204ENST00000553405 EHMT2Q96KQ7 1210 aa24.35■■□□□ 1.49
MTHFD1-204ENST00000553405 ARAP1Q96P48 1450 aa24.34■■□□□ 1.49
MTHFD1-204ENST00000553405 UBTFP17480 764 aaKnown RBP24.31■■□□□ 1.48
MTHFD1-204ENST00000553405 SAMD9Q5K651 1589 aa24.31■■□□□ 1.48
MTHFD1-204ENST00000553405 KIAA0556O60303 1618 aa24.31■■□□□ 1.48
MTHFD1-204ENST00000553405 TNIKQ9UKE5 1360 aa24.3■■□□□ 1.48
MTHFD1-204ENST00000553405 LOC105371045A0A1W2PR82 267 aa24.26■■□□□ 1.47
MTHFD1-204ENST00000553405 CARMIL2Q6F5E8 1435 aa24.25■■□□□ 1.47
MTHFD1-204ENST00000553405 EFCAB5A4FU69 1503 aa24.21■■□□□ 1.47
MTHFD1-204ENST00000553405 ARHGAP35Q9NRY4 1499 aa24.19■■□□□ 1.46
MTHFD1-204ENST00000553405 PTPRGP23470 1445 aa24.13■■□□□ 1.45
MTHFD1-204ENST00000553405 CYB5RLQ6IPT4 315 aa24.12■■□□□ 1.45
MTHFD1-204ENST00000553405 FHOD3Q2V2M9 1422 aa24.11■■□□□ 1.45
MTHFD1-204ENST00000553405 RANGAP1P46060 587 aaPredicted RBP24.1■■□□□ 1.45
MTHFD1-204ENST00000553405 CEP162Q5TB80 1403 aa24.1■■□□□ 1.45
MTHFD1-204ENST00000553405 CLIP1P30622 1438 aa24.09■■□□□ 1.45
MTHFD1-204ENST00000553405 P3H3Q8IVL6 736 aa24.08■■□□□ 1.45
MTHFD1-204ENST00000553405 ABCA8O94911 1581 aa24.05■■□□□ 1.44
MTHFD1-204ENST00000553405 ADCY10Q96PN6 1610 aa24.05■■□□□ 1.44
MTHFD1-204ENST00000553405 UHRF1BP1LA0JNW5 1464 aa24.03■■□□□ 1.44
MTHFD1-204ENST00000553405 PLB1Q6P1J6 1458 aa24.02■■□□□ 1.44
MTHFD1-204ENST00000553405 UACAQ9BZF9 1416 aa24.01■■□□□ 1.43
MTHFD1-204ENST00000553405 ABCC2Q92887 1545 aa24■■□□□ 1.43
MTHFD1-204ENST00000553405 TTBK1Q5TCY1 1321 aaPredicted RBP23.97■■□□□ 1.43
MTHFD1-204ENST00000553405 RAPGEF6Q8TEU7 1601 aa23.94■■□□□ 1.42
MTHFD1-204ENST00000553405 FMN1Q68DA7 1419 aa23.93■■□□□ 1.42
MTHFD1-204ENST00000553405 KDM5BQ9UGL1 1544 aa23.91■■□□□ 1.42
MTHFD1-204ENST00000553405 NUP153P49790 1475 aaKnown RBP23.9■■□□□ 1.42
MTHFD1-204ENST00000553405 PCF11O94913 1555 aaKnown RBP23.86■■□□□ 1.41
MTHFD1-204ENST00000553405 CASKIN1Q8WXD9 1431 aa23.84■■□□□ 1.41
MTHFD1-204ENST00000553405 ZCCHC11Q5TAX3 1644 aaKnown RBP23.84■■□□□ 1.41
MTHFD1-204ENST00000553405 ATP10BO94823 1461 aa23.82■■□□□ 1.4
MTHFD1-204ENST00000553405 MAPKBP1O60336 1514 aa23.82■■□□□ 1.4
MTHFD1-204ENST00000553405 LRRIQ1Q96JM4 1722 aa23.81■■□□□ 1.4
MTHFD1-204ENST00000553405 HECW1Q76N89 1606 aa23.8■■□□□ 1.4
MTHFD1-204ENST00000553405 FYCO1Q9BQS8 1478 aa23.8■■□□□ 1.4
MTHFD1-204ENST00000553405 VPS8Q8N3P4 1428 aa23.78■■□□□ 1.4
MTHFD1-204ENST00000553405 EPRSP07814 1512 aaKnown RBP23.76■■□□□ 1.39
MTHFD1-204ENST00000553405 CDK13Q14004 1512 aaKnown RBP23.74■■□□□ 1.39
MTHFD1-204ENST00000553405 ASXL2Q76L83 1435 aa23.72■■□□□ 1.39
MTHFD1-204ENST00000553405 NPM1P06748 294 aaKnown RBP eCLIP23.71■■□□□ 1.39
MTHFD1-204ENST00000553405 ARID3CA6NKF2 412 aa23.7■■□□□ 1.38
MTHFD1-204ENST00000553405 CCDC18Q5T9S5 1454 aa23.66■■□□□ 1.38
MTHFD1-204ENST00000553405 WDR7Q9Y4E6 1490 aa23.66■■□□□ 1.38
MTHFD1-204ENST00000553405 ABCC10Q5T3U5 1492 aa23.64■■□□□ 1.38
MTHFD1-204ENST00000553405 DIP2BQ9P265 1576 aa23.64■■□□□ 1.37
MTHFD1-204ENST00000553405 MAGI3Q5TCQ9 1506 aa23.62■■□□□ 1.37
MTHFD1-204ENST00000553405 KIF13AQ9H1H9 1805 aa23.61■■□□□ 1.37
MTHFD1-204ENST00000553405 ATP1B4Q9UN42 357 aaPredicted RBP23.6■■□□□ 1.37
MTHFD1-204ENST00000553405 CFAP43Q8NDM7 1665 aa23.59■■□□□ 1.37
MTHFD1-204ENST00000553405 GLI2P10070 1586 aa23.58■■□□□ 1.37
MTHFD1-204ENST00000553405 MAP3K1Q13233 1512 aa23.57■■□□□ 1.36
MTHFD1-204ENST00000553405 TIAM1Q13009 1591 aa23.57■■□□□ 1.36
MTHFD1-204ENST00000553405 TROQ12816 1431 aaPredicted RBP23.54■■□□□ 1.36
MTHFD1-204ENST00000553405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.53■■□□□ 1.36
MTHFD1-204ENST00000553405 HNRNPUL2Q1KMD3 747 aaKnown RBP23.53■■□□□ 1.36
MTHFD1-204ENST00000553405 PLEKHD1A6NEE1 506 aa23.51■■□□□ 1.35
MTHFD1-204ENST00000553405 KIF14Q15058 1648 aa23.5■■□□□ 1.35
MTHFD1-204ENST00000553405 ABCA9Q8IUA7 1624 aa23.5■■□□□ 1.35
MTHFD1-204ENST00000553405 MAP3K4Q9Y6R4 1608 aa23.49■■□□□ 1.35
MTHFD1-204ENST00000553405 FAM69CQ0P6D2 419 aa23.48■■□□□ 1.35
MTHFD1-204ENST00000553405 CDK11AQ9UQ88 783 aaPredicted RBP23.47■■□□□ 1.35
MTHFD1-204ENST00000553405 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.47■■□□□ 1.35
MTHFD1-204ENST00000553405 TTC37Q6PGP7 1564 aa23.45■■□□□ 1.34
MTHFD1-204ENST00000553405 EHBP1L1Q8N3D4 1523 aa23.45■■□□□ 1.34
MTHFD1-204ENST00000553405 LRRC9Q6ZRR7 1453 aa23.45■■□□□ 1.34
MTHFD1-204ENST00000553405 KCNH8Q96L42 1107 aa23.45■■□□□ 1.34
MTHFD1-204ENST00000553405 PPRC1Q5VV67 1664 aaKnown RBP23.44■■□□□ 1.34
MTHFD1-204ENST00000553405 TRHP20396 242 aaPredicted RBP23.42■■□□□ 1.34
MTHFD1-204ENST00000553405 KANK4Q5T7N3 995 aaPredicted RBP23.41■■□□□ 1.34
MTHFD1-204ENST00000553405 MTUS2Q5JR59 1369 aa23.4■■□□□ 1.34
MTHFD1-204ENST00000553405 CD109Q6YHK3 1445 aa23.36■■□□□ 1.33
MTHFD1-204ENST00000553405 NCOA2Q15596 1464 aa23.33■■□□□ 1.33
MTHFD1-204ENST00000553405 TSPOAP1O95153 1857 aa23.32■■□□□ 1.32
MTHFD1-204ENST00000553405 SUPT6HQ7KZ85 1726 aaKnown RBP23.32■■□□□ 1.32
MTHFD1-204ENST00000553405 ARAP3Q8WWN8 1544 aa23.32■■□□□ 1.32
MTHFD1-204ENST00000553405 PLCH2O75038 1416 aa23.31■■□□□ 1.32
MTHFD1-204ENST00000553405 CDC42BPAQ5VT25 1732 aa23.3■■□□□ 1.32
MTHFD1-204ENST00000553405 MYO5CQ9NQX4 1742 aa23.3■■□□□ 1.32
MTHFD1-204ENST00000553405 PREX2Q70Z35 1606 aa23.3■■□□□ 1.32
MTHFD1-204ENST00000553405 GPATCH8Q9UKJ3 1502 aaKnown RBP23.29■■□□□ 1.32
MTHFD1-204ENST00000553405 CDC42BPBQ9Y5S2 1711 aa23.28■■□□□ 1.32
MTHFD1-204ENST00000553405 APLP2Q06481 763 aa23.27■■□□□ 1.32
MTHFD1-204ENST00000553405 TEX14Q8IWB6 1497 aa23.25■■□□□ 1.31
MTHFD1-204ENST00000553405 NEO1Q92859 1461 aa23.23■■□□□ 1.31
MTHFD1-204ENST00000553405 FANCAO15360 1455 aa23.21■■□□□ 1.31
MTHFD1-204ENST00000553405 COL17A1Q9UMD9 1497 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms