RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 IRX6P78412 446 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-214ENST00000552783 CCNB3Q8WWL7 1395 aa6.9□□□□□ -1.3
LIMA1-214ENST00000552783 P3H3Q8IVL6 736 aa6.9□□□□□ -1.31
LIMA1-214ENST00000552783 CUX2O14529 1486 aa6.89□□□□□ -1.31
LIMA1-214ENST00000552783 PRXQ9BXM0 1461 aa6.87□□□□□ -1.31
LIMA1-214ENST00000552783 FAM50AQ14320 339 aaKnown RBP6.86□□□□□ -1.31
LIMA1-214ENST00000552783 NEFLP07196 543 aa6.86□□□□□ -1.31
LIMA1-214ENST00000552783 ARHGAP35Q9NRY4 1499 aa6.85□□□□□ -1.31
LIMA1-214ENST00000552783 TOP2BQ02880 1626 aa6.84□□□□□ -1.31
LIMA1-214ENST00000552783 PHLDB1Q86UU1 1377 aa6.83□□□□□ -1.32
LIMA1-214ENST00000552783 SETD5Q9C0A6 1442 aa6.82□□□□□ -1.32
LIMA1-214ENST00000552783 ANP32CO43423 234 aa6.82□□□□□ -1.32
LIMA1-214ENST00000552783 NCAPD3P42695 1498 aa6.82□□□□□ -1.32
LIMA1-214ENST00000552783 ATAD2BQ9ULI0 1458 aa6.82□□□□□ -1.32
LIMA1-214ENST00000552783 PEG3Q9GZU2 1588 aa6.82□□□□□ -1.32
LIMA1-214ENST00000552783 ERICH3Q5RHP9 1530 aa6.82□□□□□ -1.32
LIMA1-214ENST00000552783 CCER2I3L3R5 266 aa6.81□□□□□ -1.32
LIMA1-214ENST00000552783 HNRNPUQ00839 825 aaKnown RBP eCLIP6.81□□□□□ -1.32
LIMA1-214ENST00000552783 CCDC184Q52MB2 194 aa6.81□□□□□ -1.32
LIMA1-214ENST00000552783 FANCIQ9NVI1 1328 aa6.8□□□□□ -1.32
LIMA1-214ENST00000552783 HMGXB3Q12766 1538 aa6.8□□□□□ -1.32
LIMA1-214ENST00000552783 CUX1P39880 1505 aa6.79□□□□□ -1.32
LIMA1-214ENST00000552783 ARID3CA6NKF2 412 aa6.78□□□□□ -1.32
LIMA1-214ENST00000552783 BIVM-ERCC5R4GMW8 1640 aa6.78□□□□□ -1.32
LIMA1-214ENST00000552783 B4GALNT3Q6L9W6 998 aa6.77□□□□□ -1.32
LIMA1-214ENST00000552783 CDK11AQ9UQ88 783 aaPredicted RBP6.77□□□□□ -1.32
LIMA1-214ENST00000552783 TIAM1Q13009 1591 aa6.77□□□□□ -1.33
LIMA1-214ENST00000552783 PAK3O75914 559 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-214ENST00000552783 DEKP35659 375 aaKnown RBP6.77□□□□□ -1.33
LIMA1-214ENST00000552783 LRRC9Q6ZRR7 1453 aa6.76□□□□□ -1.33
LIMA1-214ENST00000552783 CNGB1Q14028 1251 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-214ENST00000552783 ERICH6Q7L0X2 663 aa6.76□□□□□ -1.33
LIMA1-214ENST00000552783 KIF27Q86VH2 1401 aa6.75□□□□□ -1.33
LIMA1-214ENST00000552783 NBR1Q14596 966 aa6.75□□□□□ -1.33
LIMA1-214ENST00000552783 PRKCSHP14314 528 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-214ENST00000552783 SENP3-EIF4A1A0A087X0R7 540 aa6.75□□□□□ -1.33
LIMA1-214ENST00000552783 WASHC2AQ641Q2 1341 aa6.74□□□□□ -1.33
LIMA1-214ENST00000552783 IGF1RP08069 1367 aa6.73□□□□□ -1.33
LIMA1-214ENST00000552783 C11orf95C9JLR9 678 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-214ENST00000552783 PTPRKQ15262 1439 aa6.73□□□□□ -1.33
LIMA1-214ENST00000552783 AQRO60306 1485 aaKnown RBP eCLIP6.73□□□□□ -1.33
LIMA1-214ENST00000552783 TONSLQ96HA7 1378 aa6.73□□□□□ -1.33
LIMA1-214ENST00000552783 ANO8Q9HCE9 1232 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-214ENST00000552783 POTEDQ86YR6 584 aa6.72□□□□□ -1.33
LIMA1-214ENST00000552783 KDM5BQ9UGL1 1544 aa6.72□□□□□ -1.33
LIMA1-214ENST00000552783 FAM9BQ8IZU0 186 aa6.72□□□□□ -1.33
LIMA1-214ENST00000552783 PPP4R2Q9NY27 417 aa6.71□□□□□ -1.33
LIMA1-214ENST00000552783 TIMELESSQ9UNS1 1208 aa6.71□□□□□ -1.33
LIMA1-214ENST00000552783 HSPA5P11021 654 aaKnown RBP6.71□□□□□ -1.34
LIMA1-214ENST00000552783 PCF11O94913 1555 aaKnown RBP6.7□□□□□ -1.34
LIMA1-214ENST00000552783 FHOD3Q2V2M9 1422 aa6.69□□□□□ -1.34
LIMA1-214ENST00000552783 POLR3GLQ9BT43 218 aa6.69□□□□□ -1.34
LIMA1-214ENST00000552783 MAP3K1Q13233 1512 aa6.69□□□□□ -1.34
LIMA1-214ENST00000552783 NOP58Q9Y2X3 529 aaKnown RBP6.69□□□□□ -1.34
LIMA1-214ENST00000552783 CHIC2Q9UKJ5 165 aa6.68□□□□□ -1.34
LIMA1-214ENST00000552783 CARMIL1Q5VZK9 1371 aa6.68□□□□□ -1.34
LIMA1-214ENST00000552783 CCDC18Q5T9S5 1454 aa6.68□□□□□ -1.34
LIMA1-214ENST00000552783 SALL2Q9Y467 1007 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-214ENST00000552783 AKNAQ7Z591 1439 aa6.67□□□□□ -1.34
LIMA1-214ENST00000552783 IL27Q8NEV9 243 aa6.67□□□□□ -1.34
LIMA1-214ENST00000552783 PRKRIP1Q9H875 184 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-214ENST00000552783 MRS2Q9HD23 443 aa6.66□□□□□ -1.34
LIMA1-214ENST00000552783 DENND4BO75064 1496 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-214ENST00000552783 FHAD1B1AJZ9 1412 aa6.66□□□□□ -1.34
LIMA1-214ENST00000552783 CFAP43Q8NDM7 1665 aa6.66□□□□□ -1.34
LIMA1-214ENST00000552783 RTN4Q9NQC3 1192 aaKnown RBP6.65□□□□□ -1.34
LIMA1-214ENST00000552783 RRP7BPQ9NSQ0 103 aa6.65□□□□□ -1.34
LIMA1-214ENST00000552783 PPP6R1Q9UPN7 881 aa6.65□□□□□ -1.34
LIMA1-214ENST00000552783 FGD6Q6ZV73 1430 aa6.65□□□□□ -1.34
LIMA1-214ENST00000552783 UACAQ9BZF9 1416 aa6.65□□□□□ -1.34
LIMA1-214ENST00000552783 CCDC136Q96JN2 1154 aa6.65□□□□□ -1.34
LIMA1-214ENST00000552783 NAIPQ13075 1403 aa6.65□□□□□ -1.34
LIMA1-214ENST00000552783 LAMC3Q9Y6N6 1575 aa6.64□□□□□ -1.35
LIMA1-214ENST00000552783 MTUS2Q5JR59 1369 aa6.64□□□□□ -1.35
LIMA1-214ENST00000552783 HFM1A2PYH4 1435 aa6.64□□□□□ -1.35
LIMA1-214ENST00000552783 CFTRP13569 1480 aa6.64□□□□□ -1.35
LIMA1-214ENST00000552783 PTPN23Q9H3S7 1636 aa6.64□□□□□ -1.35
LIMA1-214ENST00000552783 CNTLNQ9NXG0 1405 aa6.63□□□□□ -1.35
LIMA1-214ENST00000552783 ZBED9Q6R2W3 1325 aa6.63□□□□□ -1.35
LIMA1-214ENST00000552783 ERICH6BQ5W0A0 696 aa6.63□□□□□ -1.35
LIMA1-214ENST00000552783 L3MBTL2Q969R5 705 aa6.63□□□□□ -1.35
LIMA1-214ENST00000552783 FBLN2P98095 1184 aa6.63□□□□□ -1.35
LIMA1-214ENST00000552783 NBPF8Q3BBV2 869 aa6.63□□□□□ -1.35
LIMA1-214ENST00000552783 NCOA2Q15596 1464 aa6.63□□□□□ -1.35
LIMA1-214ENST00000552783 EIF4G2P78344 907 aaKnown RBP eCLIP6.63□□□□□ -1.35
LIMA1-214ENST00000552783 ZNF326Q5BKZ1 582 aaKnown RBP6.63□□□□□ -1.35
LIMA1-214ENST00000552783 KDM6BO15054 1643 aa6.62□□□□□ -1.35
LIMA1-214ENST00000552783 NESP48681 1621 aa6.62□□□□□ -1.35
LIMA1-214ENST00000552783 CCDC7Q96M83 1385 aa6.62□□□□□ -1.35
LIMA1-214ENST00000552783 PIAS4Q8N2W9 510 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-214ENST00000552783 IPO9Q96P70 1041 aaKnown RBP6.62□□□□□ -1.35
LIMA1-214ENST00000552783 FGD5Q6ZNL6 1462 aa6.62□□□□□ -1.35
LIMA1-214ENST00000552783 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.61□□□□□ -1.35
LIMA1-214ENST00000552783 CADPSQ9ULU8 1353 aa6.61□□□□□ -1.35
LIMA1-214ENST00000552783 TDRD9Q8NDG6 1382 aaKnown RBP6.61□□□□□ -1.35
LIMA1-214ENST00000552783 CASKIN1Q8WXD9 1431 aa6.61□□□□□ -1.35
LIMA1-214ENST00000552783 ADRA2BP18089 450 aa6.61□□□□□ -1.35
LIMA1-214ENST00000552783 KIF7Q2M1P5 1343 aa6.6□□□□□ -1.35
LIMA1-214ENST00000552783 NCOA1Q15788 1441 aa6.6□□□□□ -1.35
LIMA1-214ENST00000552783 SKAP1Q86WV1 359 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms