RNA–Protein interactions for RNA: ENST00000551630.1

PTCH1-224, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 539 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-224ENST00000551630 EHMT2Q96KQ7 1210 aa25.24■■□□□ 1.63
PTCH1-224ENST00000551630 ARHGEF11O15085 1522 aa25.23■■□□□ 1.63
PTCH1-224ENST00000551630 SHROOM2Q13796 1616 aa25.23■■□□□ 1.63
PTCH1-224ENST00000551630 RIMBP3CA6NJZ7 1639 aa25.21■■□□□ 1.63
PTCH1-224ENST00000551630 RIMBP3BA6NNM3 1639 aa25.21■■□□□ 1.63
PTCH1-224ENST00000551630 RIMBP3Q9UFD9 1639 aa25.21■■□□□ 1.63
PTCH1-224ENST00000551630 CTTNBP2Q8WZ74 1663 aa25.2■■□□□ 1.63
PTCH1-224ENST00000551630 IQGAP2Q13576 1575 aa25.2■■□□□ 1.62
PTCH1-224ENST00000551630 GOLGA3Q08378 1498 aa25.18■■□□□ 1.62
PTCH1-224ENST00000551630 JPH4Q96JJ6 628 aa25.17■■□□□ 1.62
PTCH1-224ENST00000551630 ERCC6L2Q5T890 1561 aa25.17■■□□□ 1.62
PTCH1-224ENST00000551630 PRG4Q92954 1404 aaPredicted RBP25.13■■□□□ 1.61
PTCH1-224ENST00000551630 ARAP1Q96P48 1450 aa25.08■■□□□ 1.6
PTCH1-224ENST00000551630 UGGT2Q9NYU1 1516 aa25.07■■□□□ 1.6
PTCH1-224ENST00000551630 UBTFP17480 764 aaKnown RBP25.07■■□□□ 1.6
PTCH1-224ENST00000551630 DISP1Q96F81 1524 aa25.02■■□□□ 1.6
PTCH1-224ENST00000551630 KIAA0556O60303 1618 aa24.98■■□□□ 1.59
PTCH1-224ENST00000551630 CARMIL2Q6F5E8 1435 aa24.98■■□□□ 1.59
PTCH1-224ENST00000551630 RANGAP1P46060 587 aaPredicted RBP24.98■■□□□ 1.59
PTCH1-224ENST00000551630 CYB5RLQ6IPT4 315 aa24.96■■□□□ 1.59
PTCH1-224ENST00000551630 TNIKQ9UKE5 1360 aa24.91■■□□□ 1.58
PTCH1-224ENST00000551630 TTBK1Q5TCY1 1321 aaPredicted RBP24.9■■□□□ 1.58
PTCH1-224ENST00000551630 SAMD9Q5K651 1589 aa24.9■■□□□ 1.58
PTCH1-224ENST00000551630 LOC105371045A0A1W2PR82 267 aa24.9■■□□□ 1.58
PTCH1-224ENST00000551630 P3H3Q8IVL6 736 aa24.87■■□□□ 1.57
PTCH1-224ENST00000551630 PTPRGP23470 1445 aa24.86■■□□□ 1.57
PTCH1-224ENST00000551630 EFCAB5A4FU69 1503 aa24.83■■□□□ 1.57
PTCH1-224ENST00000551630 FHOD3Q2V2M9 1422 aa24.81■■□□□ 1.56
PTCH1-224ENST00000551630 ARHGAP35Q9NRY4 1499 aa24.79■■□□□ 1.56
PTCH1-224ENST00000551630 ADCY10Q96PN6 1610 aa24.74■■□□□ 1.55
PTCH1-224ENST00000551630 CLIP1P30622 1438 aa24.73■■□□□ 1.55
PTCH1-224ENST00000551630 PLB1Q6P1J6 1458 aa24.71■■□□□ 1.55
PTCH1-224ENST00000551630 CEP162Q5TB80 1403 aa24.71■■□□□ 1.55
PTCH1-224ENST00000551630 UACAQ9BZF9 1416 aa24.71■■□□□ 1.55
PTCH1-224ENST00000551630 ABCA8O94911 1581 aa24.68■■□□□ 1.54
PTCH1-224ENST00000551630 ABCC2Q92887 1545 aa24.67■■□□□ 1.54
PTCH1-224ENST00000551630 UHRF1BP1LA0JNW5 1464 aa24.65■■□□□ 1.54
PTCH1-224ENST00000551630 RAPGEF6Q8TEU7 1601 aa24.61■■□□□ 1.53
PTCH1-224ENST00000551630 FMN1Q68DA7 1419 aa24.59■■□□□ 1.53
PTCH1-224ENST00000551630 ARID3CA6NKF2 412 aa24.55■■□□□ 1.52
PTCH1-224ENST00000551630 NPM1P06748 294 aaKnown RBP eCLIP24.55■■□□□ 1.52
PTCH1-224ENST00000551630 KDM5BQ9UGL1 1544 aa24.54■■□□□ 1.52
PTCH1-224ENST00000551630 ZCCHC11Q5TAX3 1644 aaKnown RBP24.53■■□□□ 1.52
PTCH1-224ENST00000551630 NUP153P49790 1475 aaKnown RBP24.52■■□□□ 1.52
PTCH1-224ENST00000551630 PCF11O94913 1555 aaKnown RBP24.51■■□□□ 1.51
PTCH1-224ENST00000551630 MAPKBP1O60336 1514 aa24.48■■□□□ 1.51
PTCH1-224ENST00000551630 HECW1Q76N89 1606 aa24.47■■□□□ 1.51
PTCH1-224ENST00000551630 ATP10BO94823 1461 aa24.46■■□□□ 1.51
PTCH1-224ENST00000551630 ATP1B4Q9UN42 357 aaPredicted RBP24.46■■□□□ 1.51
PTCH1-224ENST00000551630 CASKIN1Q8WXD9 1431 aa24.44■■□□□ 1.5
PTCH1-224ENST00000551630 ASXL2Q76L83 1435 aa24.43■■□□□ 1.5
PTCH1-224ENST00000551630 CDK13Q14004 1512 aaKnown RBP24.42■■□□□ 1.5
PTCH1-224ENST00000551630 FYCO1Q9BQS8 1478 aa24.41■■□□□ 1.5
PTCH1-224ENST00000551630 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.4■■□□□ 1.5
PTCH1-224ENST00000551630 HNRNPUL2Q1KMD3 747 aaKnown RBP24.4■■□□□ 1.5
PTCH1-224ENST00000551630 EPRSP07814 1512 aaKnown RBP24.4■■□□□ 1.5
PTCH1-224ENST00000551630 LRRIQ1Q96JM4 1722 aa24.38■■□□□ 1.49
PTCH1-224ENST00000551630 VPS8Q8N3P4 1428 aa24.38■■□□□ 1.49
PTCH1-224ENST00000551630 WDR7Q9Y4E6 1490 aa24.35■■□□□ 1.49
PTCH1-224ENST00000551630 TRHP20396 242 aaPredicted RBP24.35■■□□□ 1.49
PTCH1-224ENST00000551630 ABCC10Q5T3U5 1492 aa24.33■■□□□ 1.49
PTCH1-224ENST00000551630 DIP2BQ9P265 1576 aa24.33■■□□□ 1.48
PTCH1-224ENST00000551630 CCDC18Q5T9S5 1454 aa24.32■■□□□ 1.48
PTCH1-224ENST00000551630 KIF13AQ9H1H9 1805 aa24.28■■□□□ 1.48
PTCH1-224ENST00000551630 FAM69CQ0P6D2 419 aa24.27■■□□□ 1.48
PTCH1-224ENST00000551630 KCNH8Q96L42 1107 aa24.25■■□□□ 1.47
PTCH1-224ENST00000551630 PLEKHD1A6NEE1 506 aa24.24■■□□□ 1.47
PTCH1-224ENST00000551630 GLI2P10070 1586 aa24.22■■□□□ 1.47
PTCH1-224ENST00000551630 MAGI3Q5TCQ9 1506 aa24.21■■□□□ 1.47
PTCH1-224ENST00000551630 CFAP43Q8NDM7 1665 aa24.19■■□□□ 1.46
PTCH1-224ENST00000551630 CDK11AQ9UQ88 783 aaPredicted RBP24.19■■□□□ 1.46
PTCH1-224ENST00000551630 TROQ12816 1431 aaPredicted RBP24.18■■□□□ 1.46
PTCH1-224ENST00000551630 TIAM1Q13009 1591 aa24.16■■□□□ 1.46
PTCH1-224ENST00000551630 KIF14Q15058 1648 aa24.14■■□□□ 1.46
PTCH1-224ENST00000551630 MAP3K4Q9Y6R4 1608 aa24.14■■□□□ 1.46
PTCH1-224ENST00000551630 ABCA9Q8IUA7 1624 aa24.13■■□□□ 1.45
PTCH1-224ENST00000551630 TSPOAP1O95153 1857 aa24.11■■□□□ 1.45
PTCH1-224ENST00000551630 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.11■■□□□ 1.45
PTCH1-224ENST00000551630 TTC37Q6PGP7 1564 aa24.11■■□□□ 1.45
PTCH1-224ENST00000551630 MTUS2Q5JR59 1369 aa24.1■■□□□ 1.45
PTCH1-224ENST00000551630 EHBP1L1Q8N3D4 1523 aa24.09■■□□□ 1.45
PTCH1-224ENST00000551630 CD109Q6YHK3 1445 aa24.09■■□□□ 1.45
PTCH1-224ENST00000551630 MAP3K1Q13233 1512 aa24.08■■□□□ 1.45
PTCH1-224ENST00000551630 PPRC1Q5VV67 1664 aaKnown RBP24.08■■□□□ 1.44
PTCH1-224ENST00000551630 APLP2Q06481 763 aa24.05■■□□□ 1.44
PTCH1-224ENST00000551630 LRRC9Q6ZRR7 1453 aa24.04■■□□□ 1.44
PTCH1-224ENST00000551630 KANK4Q5T7N3 995 aaPredicted RBP24.02■■□□□ 1.44
PTCH1-224ENST00000551630 TEX14Q8IWB6 1497 aa23.98■■□□□ 1.43
PTCH1-224ENST00000551630 MYO5CQ9NQX4 1742 aa23.97■■□□□ 1.43
PTCH1-224ENST00000551630 SUPT6HQ7KZ85 1726 aaKnown RBP23.96■■□□□ 1.43
PTCH1-224ENST00000551630 NCOA2Q15596 1464 aa23.94■■□□□ 1.42
PTCH1-224ENST00000551630 PLCH2O75038 1416 aa23.94■■□□□ 1.42
PTCH1-224ENST00000551630 PREX2Q70Z35 1606 aa23.92■■□□□ 1.42
PTCH1-224ENST00000551630 CDC42BPAQ5VT25 1732 aa23.91■■□□□ 1.42
PTCH1-224ENST00000551630 CCNB3Q8WWL7 1395 aa23.91■■□□□ 1.42
PTCH1-224ENST00000551630 ARHGAP5Q13017 1502 aa23.9■■□□□ 1.42
PTCH1-224ENST00000551630 FANCAO15360 1455 aa23.9■■□□□ 1.42
PTCH1-224ENST00000551630 GPATCH8Q9UKJ3 1502 aaKnown RBP23.89■■□□□ 1.42
PTCH1-224ENST00000551630 ARAP3Q8WWN8 1544 aa23.89■■□□□ 1.41
PTCH1-224ENST00000551630 CDC42BPBQ9Y5S2 1711 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms