RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, humanhuman

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-223ENST00000545215 DMRT2Q9Y5R5 561 aa13.64□□□□□ -0.23
LDHA-223ENST00000545215 CHMP7Q8WUX9 453 aaPredicted RBP13.62□□□□□ -0.23
LDHA-223ENST00000545215 TOPBP1Q92547 1522 aa13.6□□□□□ -0.23
LDHA-223ENST00000545215 ABCC10Q5T3U5 1492 aa13.58□□□□□ -0.24
LDHA-223ENST00000545215 TARBP1Q13395 1621 aaKnown RBP13.58□□□□□ -0.24
LDHA-223ENST00000545215 SLC4A2P04920 1241 aa13.55□□□□□ -0.24
LDHA-223ENST00000545215 SPATA31D1Q6ZQQ2 1576 aa13.53□□□□□ -0.24
LDHA-223ENST00000545215 SNAPC4Q5SXM2 1469 aa13.52□□□□□ -0.24
LDHA-223ENST00000545215 ABCC8Q09428 1581 aa13.5□□□□□ -0.25
LDHA-223ENST00000545215 DIP2BQ9P265 1576 aa13.47□□□□□ -0.25
LDHA-223ENST00000545215 MAGI1Q96QZ7 1491 aaPredicted RBP13.46□□□□□ -0.25
LDHA-223ENST00000545215 TDRD9Q8NDG6 1382 aaKnown RBP13.46□□□□□ -0.26
LDHA-223ENST00000545215 CERKQ8TCT0 537 aa13.43□□□□□ -0.26
LDHA-223ENST00000545215 DNMBPQ6XZF7 1577 aa13.41□□□□□ -0.26
LDHA-223ENST00000545215 MAPKBP1O60336 1514 aa13.4□□□□□ -0.26
LDHA-223ENST00000545215 PRDM2Q13029 1718 aa13.4□□□□□ -0.26
LDHA-223ENST00000545215 TSPOAP1O95153 1857 aa13.39□□□□□ -0.27
LDHA-223ENST00000545215 ATXN8OSP0DMR3 200 aa13.38□□□□□ -0.27
LDHA-223ENST00000545215 WIZO95785 1651 aa13.37□□□□□ -0.27
LDHA-223ENST00000545215 POLA1P09884 1462 aaPredicted RBP13.37□□□□□ -0.27
LDHA-223ENST00000545215 MYCNP04198 464 aaPredicted RBP13.37□□□□□ -0.27
LDHA-223ENST00000545215 NPM1P06748 294 aaKnown RBP eCLIP13.37□□□□□ -0.27
LDHA-223ENST00000545215 CEP170Q5SW79 1584 aa13.35□□□□□ -0.27
LDHA-223ENST00000545215 RAD54L2Q9Y4B4 1467 aa13.35□□□□□ -0.27
LDHA-223ENST00000545215 TOP2BQ02880 1626 aa13.35□□□□□ -0.27
LDHA-223ENST00000545215 WDR97A6NE52 1622 aa13.33□□□□□ -0.27
LDHA-223ENST00000545215 GRIN2BQ13224 1484 aa13.33□□□□□ -0.28
LDHA-223ENST00000545215 SOGA1O94964 1423 aa13.31□□□□□ -0.28
LDHA-223ENST00000545215 COL17A1Q9UMD9 1497 aaPredicted RBP13.27□□□□□ -0.29
LDHA-223ENST00000545215 SHROOM2Q13796 1616 aa13.24□□□□□ -0.29
LDHA-223ENST00000545215 RTN4Q9NQC3 1192 aaKnown RBP13.22□□□□□ -0.29
LDHA-223ENST00000545215 AMER1Q5JTC6 1135 aaPredicted RBP13.21□□□□□ -0.29
LDHA-223ENST00000545215 PPRC1Q5VV67 1664 aaKnown RBP13.19□□□□□ -0.3
LDHA-223ENST00000545215 PCF11O94913 1555 aaKnown RBP13.19□□□□□ -0.3
LDHA-223ENST00000545215 NUP160Q12769 1436 aa13.17□□□□□ -0.3
LDHA-223ENST00000545215 PRG4Q92954 1404 aaPredicted RBP13.16□□□□□ -0.3
LDHA-223ENST00000545215 ADCY10Q96PN6 1610 aa13.15□□□□□ -0.3
LDHA-223ENST00000545215 FKBP8Q14318 412 aa13.14□□□□□ -0.31
LDHA-223ENST00000545215 PTPRMP28827 1452 aa13.14□□□□□ -0.31
LDHA-223ENST00000545215 GRIN2AQ12879 1464 aa13.14□□□□□ -0.31
LDHA-223ENST00000545215 PBRM1Q86U86 1689 aa13.11□□□□□ -0.31
LDHA-223ENST00000545215 TOP2AP11388 1531 aaKnown RBP13.11□□□□□ -0.31
LDHA-223ENST00000545215 GLI2P10070 1586 aa13.09□□□□□ -0.31
LDHA-223ENST00000545215 FGD5Q6ZNL6 1462 aa13.08□□□□□ -0.31
LDHA-223ENST00000545215 JPH4Q96JJ6 628 aa13.08□□□□□ -0.32
LDHA-223ENST00000545215 HSPA2P54652 639 aa13.07□□□□□ -0.32
LDHA-223ENST00000545215 SLC24A1O60721 1099 aa13.06□□□□□ -0.32
LDHA-223ENST00000545215 CCDC88BA6NC98 1476 aa13.02□□□□□ -0.33
LDHA-223ENST00000545215 TEX14Q8IWB6 1497 aa13.01□□□□□ -0.33
LDHA-223ENST00000545215 ADAMTSL3P82987 1691 aa13.01□□□□□ -0.33
LDHA-223ENST00000545215 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
LDHA-223ENST00000545215 KIF21BO75037 1637 aa12.98□□□□□ -0.33
LDHA-223ENST00000545215 PLB1Q6P1J6 1458 aa12.98□□□□□ -0.33
LDHA-223ENST00000545215 ASXL2Q76L83 1435 aa12.97□□□□□ -0.33
LDHA-223ENST00000545215 ABCA5Q8WWZ7 1642 aa12.95□□□□□ -0.34
LDHA-223ENST00000545215 MAP3K4Q9Y6R4 1608 aa12.95□□□□□ -0.34
LDHA-223ENST00000545215 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.94□□□□□ -0.34
LDHA-223ENST00000545215 DCAF8L1A6NGE4 600 aa12.93□□□□□ -0.34
LDHA-223ENST00000545215 ADAMTS12P58397 1594 aa12.92□□□□□ -0.34
LDHA-223ENST00000545215 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.89□□□□□ -0.35
LDHA-223ENST00000545215 HNRNPUL2Q1KMD3 747 aaKnown RBP12.89□□□□□ -0.35
LDHA-223ENST00000545215 SAMD1Q6SPF0 538 aaPredicted RBP12.89□□□□□ -0.35
LDHA-223ENST00000545215 MED1Q15648 1581 aaPredicted RBP12.89□□□□□ -0.35
LDHA-223ENST00000545215 FHAD1B1AJZ9 1412 aa12.89□□□□□ -0.35
LDHA-223ENST00000545215 KIAA0586Q9BVV6 1533 aa12.89□□□□□ -0.35
LDHA-223ENST00000545215 EPRSP07814 1512 aaKnown RBP12.88□□□□□ -0.35
LDHA-223ENST00000545215 ABCA10Q8WWZ4 1543 aa12.88□□□□□ -0.35
LDHA-223ENST00000545215 ABCC2Q92887 1545 aa12.88□□□□□ -0.35
LDHA-223ENST00000545215 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
LDHA-223ENST00000545215 CUX1P39880 1505 aa12.87□□□□□ -0.35
LDHA-223ENST00000545215 IQSEC2Q5JU85 1478 aa12.87□□□□□ -0.35
LDHA-223ENST00000545215 MADDQ8WXG6 1647 aa12.84□□□□□ -0.35
LDHA-223ENST00000545215 YEATS2Q9ULM3 1422 aa12.83□□□□□ -0.36
LDHA-223ENST00000545215 BCORL1Q5H9F3 1711 aa12.82□□□□□ -0.36
LDHA-223ENST00000545215 LTBP4Q8N2S1 1624 aa12.79□□□□□ -0.36
LDHA-223ENST00000545215 PTPRGP23470 1445 aa12.79□□□□□ -0.36
LDHA-223ENST00000545215 RUSC2Q8N2Y8 1516 aa12.78□□□□□ -0.36
LDHA-223ENST00000545215 STRCQ7RTU9 1775 aa12.76□□□□□ -0.37
LDHA-223ENST00000545215 CUL7Q14999 1698 aa12.75□□□□□ -0.37
LDHA-223ENST00000545215 RIMS1Q86UR5 1692 aaKnown RBP12.75□□□□□ -0.37
LDHA-223ENST00000545215 UBAP1LF5GYI3 381 aa12.75□□□□□ -0.37
LDHA-223ENST00000545215 MAGI3Q5TCQ9 1506 aa12.74□□□□□ -0.37
LDHA-223ENST00000545215 ARID4BQ4LE39 1312 aaPredicted RBP12.73□□□□□ -0.37
LDHA-223ENST00000545215 PTPRTO14522 1441 aa12.73□□□□□ -0.37
LDHA-223ENST00000545215 UHRF1BP1LA0JNW5 1464 aa12.72□□□□□ -0.37
LDHA-223ENST00000545215 ARAP3Q8WWN8 1544 aa12.7□□□□□ -0.38
LDHA-223ENST00000545215 HSPA1LP34931 641 aa12.7□□□□□ -0.38
LDHA-223ENST00000545215 CD109Q6YHK3 1445 aa12.7□□□□□ -0.38
LDHA-223ENST00000545215 ERICH3Q5RHP9 1530 aa12.69□□□□□ -0.38
LDHA-223ENST00000545215 ZNF219Q9P2Y4 722 aaPredicted RBP12.67□□□□□ -0.38
LDHA-223ENST00000545215 KDM5BQ9UGL1 1544 aa12.67□□□□□ -0.38
LDHA-223ENST00000545215 TTBK1Q5TCY1 1321 aaPredicted RBP12.67□□□□□ -0.38
LDHA-223ENST00000545215 CFAP43Q8NDM7 1665 aa12.64□□□□□ -0.39
LDHA-223ENST00000545215 TNIKQ9UKE5 1360 aa12.63□□□□□ -0.39
LDHA-223ENST00000545215 UACAQ9BZF9 1416 aa12.63□□□□□ -0.39
LDHA-223ENST00000545215 RGS17Q9UGC6 210 aaPredicted RBP12.62□□□□□ -0.39
LDHA-223ENST00000545215 PREX1Q8TCU6 1659 aa12.61□□□□□ -0.39
LDHA-223ENST00000545215 WDR7Q9Y4E6 1490 aa12.61□□□□□ -0.39
LDHA-223ENST00000545215 RAPGEF3O95398 923 aa12.59□□□□□ -0.39
LDHA-223ENST00000545215 ZCCHC11Q5TAX3 1644 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms