RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	LRRC9	Q6ZRR7	1453 aa		19.02	■□□□□ 0.63
CPSF7-223	ENST00000544669	TOPBP1	Q92547	1522 aa		19.01	■□□□□ 0.63
CPSF7-223	ENST00000544669	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	18.99	■□□□□ 0.63	1e-11	■■□□□ 12.1
CPSF7-223	ENST00000544669	POLA1	P09884	1462 aa	Predicted RBP	18.97	■□□□□ 0.63
CPSF7-223	ENST00000544669	FYCO1	Q9BQS8	1478 aa		18.97	■□□□□ 0.63
CPSF7-223	ENST00000544669	TIMELESS	Q9UNS1	1208 aa		18.96	■□□□□ 0.63
CPSF7-223	ENST00000544669	FMN1	Q68DA7	1419 aa		18.95	■□□□□ 0.62
CPSF7-223	ENST00000544669	CASKIN1	Q8WXD9	1431 aa		18.94	■□□□□ 0.62
CPSF7-223	ENST00000544669	PDS5B	Q9NTI5	1447 aa		18.93	■□□□□ 0.62
CPSF7-223	ENST00000544669	SETD5	Q9C0A6	1442 aa		18.93	■□□□□ 0.62
CPSF7-223	ENST00000544669	CFAP43	Q8NDM7	1665 aa		18.93	■□□□□ 0.62
CPSF7-223	ENST00000544669	GTF3C3	Q9Y5Q9	886 aa		18.91	■□□□□ 0.62
CPSF7-223	ENST00000544669	MIER1	Q8N108	512 aa		18.9	■□□□□ 0.62
CPSF7-223	ENST00000544669	RAB3GAP2	Q9H2M9	1393 aa		18.88	■□□□□ 0.61
CPSF7-223	ENST00000544669	RAD54L2	Q9Y4B4	1467 aa		18.88	■□□□□ 0.61
CPSF7-223	ENST00000544669	CTTNBP2	Q8WZ74	1663 aa		18.85	■□□□□ 0.61
CPSF7-223	ENST00000544669	PCF11	O94913	1555 aa	Known RBP	18.84	■□□□□ 0.61
CPSF7-223	ENST00000544669	PHLDB1	Q86UU1	1377 aa		18.83	■□□□□ 0.61
CPSF7-223	ENST00000544669	WDR97	A6NE52	1622 aa		18.81	■□□□□ 0.6
CPSF7-223	ENST00000544669	ITGAE	P38570	1179 aa		18.8	■□□□□ 0.6
CPSF7-223	ENST00000544669	THOC2	Q8NI27	1593 aa	Known RBP	18.8	■□□□□ 0.6
CPSF7-223	ENST00000544669	GAPVD1	Q14C86	1478 aa		18.79	■□□□□ 0.6
CPSF7-223	ENST00000544669	NES	P48681	1621 aa		18.79	■□□□□ 0.6
CPSF7-223	ENST00000544669	URB2	Q14146	1524 aa	Known RBP	18.79	■□□□□ 0.6
CPSF7-223	ENST00000544669	FHOD3	Q2V2M9	1422 aa		18.79	■□□□□ 0.6
CPSF7-223	ENST00000544669	FAM50A	Q14320	339 aa	Known RBP	18.79	■□□□□ 0.6
CPSF7-223	ENST00000544669	ABCA5	Q8WWZ7	1642 aa		18.78	■□□□□ 0.6
CPSF7-223	ENST00000544669	ATP1B4	Q9UN42	357 aa	Predicted RBP	18.77	■□□□□ 0.59
CPSF7-223	ENST00000544669	P3H3	Q8IVL6	736 aa		18.74	■□□□□ 0.59
CPSF7-223	ENST00000544669	SAMD9	Q5K651	1589 aa		18.74	■□□□□ 0.59
CPSF7-223	ENST00000544669	MAPKBP1	O60336	1514 aa		18.73	■□□□□ 0.59
CPSF7-223	ENST00000544669	YTHDC1	Q96MU7	727 aa	Known RBP	18.73	■□□□□ 0.59
CPSF7-223	ENST00000544669	MTUS2	Q5JR59	1369 aa		18.73	■□□□□ 0.59
CPSF7-223	ENST00000544669	SNAPC4	Q5SXM2	1469 aa		18.71	■□□□□ 0.59
CPSF7-223	ENST00000544669	FGD6	Q6ZV73	1430 aa		18.71	■□□□□ 0.59
CPSF7-223	ENST00000544669	KIF21A	Q7Z4S6	1674 aa		18.7	■□□□□ 0.58
CPSF7-223	ENST00000544669	CCDC18	Q5T9S5	1454 aa		18.68	■□□□□ 0.58
CPSF7-223	ENST00000544669	TDRD9	Q8NDG6	1382 aa	Known RBP	18.68	■□□□□ 0.58
CPSF7-223	ENST00000544669	EHBP1L1	Q8N3D4	1523 aa		18.66	■□□□□ 0.58
CPSF7-223	ENST00000544669	GRIN2B	Q13224	1484 aa		18.65	■□□□□ 0.58
CPSF7-223	ENST00000544669	HFM1	A2PYH4	1435 aa		18.64	■□□□□ 0.57
CPSF7-223	ENST00000544669	MYOM3	Q5VTT5	1437 aa		18.63	■□□□□ 0.57
CPSF7-223	ENST00000544669	SUPT6H	Q7KZ85	1726 aa	Known RBP	18.61	■□□□□ 0.57
CPSF7-223	ENST00000544669	TARBP1	Q13395	1621 aa	Known RBP	18.6	■□□□□ 0.57
CPSF7-223	ENST00000544669	UACA	Q9BZF9	1416 aa		18.6	■□□□□ 0.57
CPSF7-223	ENST00000544669	NCOA2	Q15596	1464 aa		18.59	■□□□□ 0.57
CPSF7-223	ENST00000544669	PPP1R15A	O75807	674 aa	Predicted RBP	18.58	■□□□□ 0.56
CPSF7-223	ENST00000544669	MRC2	Q9UBG0	1479 aa		18.56	■□□□□ 0.56
CPSF7-223	ENST00000544669	HECW1	Q76N89	1606 aa		18.56	■□□□□ 0.56
CPSF7-223	ENST00000544669	AKNA	Q7Z591	1439 aa		18.54	■□□□□ 0.56
CPSF7-223	ENST00000544669	TONSL	Q96HA7	1378 aa		18.53	■□□□□ 0.56
CPSF7-223	ENST00000544669	MIA2	Q96PC5	1412 aa		18.53	■□□□□ 0.56
CPSF7-223	ENST00000544669	ARHGEF11	O15085	1522 aa		18.53	■□□□□ 0.56
CPSF7-223	ENST00000544669	IQGAP2	Q13576	1575 aa		18.53	■□□□□ 0.56
CPSF7-223	ENST00000544669	UGGT2	Q9NYU1	1516 aa		18.53	■□□□□ 0.56
CPSF7-223	ENST00000544669	TCOF1	Q13428	1488 aa	Known RBP	18.52	■□□□□ 0.56
CPSF7-223	ENST00000544669	SIN3A	Q96ST3	1273 aa		18.51	■□□□□ 0.55
CPSF7-223	ENST00000544669	PTPN23	Q9H3S7	1636 aa		18.51	■□□□□ 0.55
CPSF7-223	ENST00000544669	IFT140	Q96RY7	1462 aa		18.5	■□□□□ 0.55
CPSF7-223	ENST00000544669	NAIP	Q13075	1403 aa		18.49	■□□□□ 0.55
CPSF7-223	ENST00000544669	ADAMTS12	P58397	1594 aa		18.49	■□□□□ 0.55
CPSF7-223	ENST00000544669	PBRM1	Q86U86	1689 aa		18.49	■□□□□ 0.55
CPSF7-223	ENST00000544669	CCER2	I3L3R5	266 aa		18.47	■□□□□ 0.55
CPSF7-223	ENST00000544669	MYT1	Q01538	1121 aa		18.46	■□□□□ 0.55
CPSF7-223	ENST00000544669	EPRS	P07814	1512 aa	Known RBP	18.45	■□□□□ 0.54
CPSF7-223	ENST00000544669	CDK11A	Q9UQ88	783 aa	Predicted RBP	18.44	■□□□□ 0.54
CPSF7-223	ENST00000544669	KIAA0586	Q9BVV6	1533 aa		18.42	■□□□□ 0.54
CPSF7-223	ENST00000544669	PTPRK	Q15262	1439 aa		18.42	■□□□□ 0.54
CPSF7-223	ENST00000544669	ANP32C	O43423	234 aa		18.41	■□□□□ 0.54
CPSF7-223	ENST00000544669	LRRIQ1	Q96JM4	1722 aa		18.4	■□□□□ 0.54
CPSF7-223	ENST00000544669	DDX10	Q13206	875 aa	Known RBP	18.39	■□□□□ 0.53
CPSF7-223	ENST00000544669	WDR62	O43379	1518 aa		18.38	■□□□□ 0.53
CPSF7-223	ENST00000544669	ROCK1	Q13464	1354 aa		18.38	■□□□□ 0.53
CPSF7-223	ENST00000544669	GCC2	Q8IWJ2	1684 aa		18.37	■□□□□ 0.53
CPSF7-223	ENST00000544669	MAGI3	Q5TCQ9	1506 aa		18.34	■□□□□ 0.53
CPSF7-223	ENST00000544669	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.3	■□□□□ 0.52
CPSF7-223	ENST00000544669	MAGI1	Q96QZ7	1491 aa	Predicted RBP	18.29	■□□□□ 0.52
CPSF7-223	ENST00000544669	KIAA0556	O60303	1618 aa		18.29	■□□□□ 0.52
CPSF7-223	ENST00000544669	TRIM52	Q96A61	297 aa		18.28	■□□□□ 0.52
CPSF7-223	ENST00000544669	DNAJC5B	Q9UF47	199 aa		18.28	■□□□□ 0.52
CPSF7-223	ENST00000544669	GRIN2A	Q12879	1464 aa		18.28	■□□□□ 0.52
CPSF7-223	ENST00000544669	MPHOSPH9	Q99550	1183 aa		18.26	■□□□□ 0.51
CPSF7-223	ENST00000544669	RRP7BP	Q9NSQ0	103 aa		18.26	■□□□□ 0.51
CPSF7-223	ENST00000544669	DISP1	Q96F81	1524 aa		18.26	■□□□□ 0.51
CPSF7-223	ENST00000544669	CDK13	Q14004	1512 aa	Known RBP	18.24	■□□□□ 0.51
CPSF7-223	ENST00000544669	DAPK1	P53355	1430 aa		18.24	■□□□□ 0.51
CPSF7-223	ENST00000544669	CARMIL2	Q6F5E8	1435 aa		18.24	■□□□□ 0.51
CPSF7-223	ENST00000544669	RAPGEF6	Q8TEU7	1601 aa		18.24	■□□□□ 0.51
CPSF7-223	ENST00000544669	EIF4G2	P78344	907 aa	Known RBP eCLIP	18.23	■□□□□ 0.51
CPSF7-223	ENST00000544669	CHIC2	Q9UKJ5	165 aa		18.22	■□□□□ 0.51
CPSF7-223	ENST00000544669	DNMT1	P26358	1616 aa	Known RBP	18.22	■□□□□ 0.51
CPSF7-223	ENST00000544669	ZNF608	Q9ULD9	1512 aa	Predicted RBP	18.21	■□□□□ 0.51
CPSF7-223	ENST00000544669	TRO	Q12816	1431 aa	Predicted RBP	18.21	■□□□□ 0.51
CPSF7-223	ENST00000544669	NUP153	P49790	1475 aa	Known RBP	18.21	■□□□□ 0.51
CPSF7-223	ENST00000544669	NEFL	P07196	543 aa		18.21	■□□□□ 0.51
CPSF7-223	ENST00000544669	SYNJ2	O15056	1496 aa		18.2	■□□□□ 0.5
CPSF7-223	ENST00000544669	CHMP7	Q8WUX9	453 aa	Predicted RBP	18.19	■□□□□ 0.5
CPSF7-223	ENST00000544669	KDM5B	Q9UGL1	1544 aa		18.18	■□□□□ 0.5
CPSF7-223	ENST00000544669	ABCC5	O15440	1437 aa		18.18	■□□□□ 0.5
CPSF7-223	ENST00000544669	EIF4G3	O43432	1585 aa	Known RBP	18.18	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms