RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 P3H3Q8IVL6 736 aa26.39■■□□□ 1.81
PTPN6-222ENST00000543744 CLSPNQ9HAW4 1339 aa26.39■■□□□ 1.81
PTPN6-222ENST00000543744 LRRC9Q6ZRR7 1453 aa26.37■■□□□ 1.81
PTPN6-222ENST00000543744 TDRD9Q8NDG6 1382 aaKnown RBP26.37■■□□□ 1.81
PTPN6-222ENST00000543744 ABCA5Q8WWZ7 1642 aa26.36■■□□□ 1.81
PTPN6-222ENST00000543744 DHX57Q6P158 1386 aaKnown RBP26.35■■□□□ 1.81
PTPN6-222ENST00000543744 CTTNBP2Q8WZ74 1663 aa26.35■■□□□ 1.81
PTPN6-222ENST00000543744 KIF21AQ7Z4S6 1674 aa26.34■■□□□ 1.81
PTPN6-222ENST00000543744 FHOD3Q2V2M9 1422 aa26.34■■□□□ 1.81
PTPN6-222ENST00000543744 GAPVD1Q14C86 1478 aa26.34■■□□□ 1.81
PTPN6-222ENST00000543744 PCF11O94913 1555 aaKnown RBP26.34■■□□□ 1.81
PTPN6-222ENST00000543744 CFAP43Q8NDM7 1665 aa26.3■■□□□ 1.8
PTPN6-222ENST00000543744 FYCO1Q9BQS8 1478 aa26.28■■□□□ 1.8
PTPN6-222ENST00000543744 ATP1B4Q9UN42 357 aaPredicted RBP26.27■■□□□ 1.8
PTPN6-222ENST00000543744 AQRO60306 1485 aaKnown RBP eCLIP26.27■■□□□ 1.8
PTPN6-222ENST00000543744 CASKIN1Q8WXD9 1431 aa26.26■■□□□ 1.79
PTPN6-222ENST00000543744 ITGAEP38570 1179 aa26.26■■□□□ 1.79
PTPN6-222ENST00000543744 PHLDB1Q86UU1 1377 aa26.23■■□□□ 1.79
PTPN6-222ENST00000543744 FMN1Q68DA7 1419 aa26.22■■□□□ 1.79
PTPN6-222ENST00000543744 TARBP1Q13395 1621 aaKnown RBP26.21■■□□□ 1.79
PTPN6-222ENST00000543744 SAMD9Q5K651 1589 aa26.14■■□□□ 1.77
PTPN6-222ENST00000543744 RAB3GAP2Q9H2M9 1393 aa26.12■■□□□ 1.77
PTPN6-222ENST00000543744 FAM50AQ14320 339 aaKnown RBP26.12■■□□□ 1.77
PTPN6-222ENST00000543744 SNAPC4Q5SXM2 1469 aa26.11■■□□□ 1.77
PTPN6-222ENST00000543744 MRC2Q9UBG0 1479 aa26.11■■□□□ 1.77
PTPN6-222ENST00000543744 SETD5Q9C0A6 1442 aa26.08■■□□□ 1.77
PTPN6-222ENST00000543744 SCAF1Q9H7N4 1312 aaKnown RBP26.05■■□□□ 1.76
PTPN6-222ENST00000543744 PBRM1Q86U86 1689 aa26.04■■□□□ 1.76
PTPN6-222ENST00000543744 ACIN1Q9UKV3 1341 aaKnown RBP26.02■■□□□ 1.76
PTPN6-222ENST00000543744 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.02■■□□□ 1.76
PTPN6-222ENST00000543744 CENPBP07199 599 aaPredicted RBP26■■□□□ 1.75
PTPN6-222ENST00000543744 MTUS2Q5JR59 1369 aa26■■□□□ 1.75
PTPN6-222ENST00000543744 GRIN2BQ13224 1484 aa25.99■■□□□ 1.75
PTPN6-222ENST00000543744 THOC2Q8NI27 1593 aaKnown RBP25.97■■□□□ 1.75
PTPN6-222ENST00000543744 ADAMTS12P58397 1594 aa25.96■■□□□ 1.75
PTPN6-222ENST00000543744 NEUROD1Q13562 356 aa25.95■■□□□ 1.75
PTPN6-222ENST00000543744 FGD6Q6ZV73 1430 aa25.95■■□□□ 1.74
PTPN6-222ENST00000543744 MAPKBP1O60336 1514 aa25.94■■□□□ 1.74
PTPN6-222ENST00000543744 IFT140Q96RY7 1462 aa25.93■■□□□ 1.74
PTPN6-222ENST00000543744 MIER1Q8N108 512 aa25.93■■□□□ 1.74
PTPN6-222ENST00000543744 LRRIQ1Q96JM4 1722 aa25.92■■□□□ 1.74
PTPN6-222ENST00000543744 IQGAP2Q13576 1575 aa25.91■■□□□ 1.74
PTPN6-222ENST00000543744 WDR62O43379 1518 aa25.9■■□□□ 1.74
PTPN6-222ENST00000543744 NCOA2Q15596 1464 aa25.86■■□□□ 1.73
PTPN6-222ENST00000543744 EHBP1L1Q8N3D4 1523 aa25.86■■□□□ 1.73
PTPN6-222ENST00000543744 ZNF608Q9ULD9 1512 aaPredicted RBP25.85■■□□□ 1.73
PTPN6-222ENST00000543744 CCDC18Q5T9S5 1454 aa25.85■■□□□ 1.73
PTPN6-222ENST00000543744 SUPT6HQ7KZ85 1726 aaKnown RBP25.83■■□□□ 1.73
PTPN6-222ENST00000543744 MYOM3Q5VTT5 1437 aa25.83■■□□□ 1.73
PTPN6-222ENST00000543744 HECW1Q76N89 1606 aa25.8■■□□□ 1.72
PTPN6-222ENST00000543744 UGGT2Q9NYU1 1516 aa25.77■■□□□ 1.72
PTPN6-222ENST00000543744 MAGI3Q5TCQ9 1506 aa25.75■■□□□ 1.71
PTPN6-222ENST00000543744 YTHDC1Q96MU7 727 aaKnown RBP25.75■■□□□ 1.71
PTPN6-222ENST00000543744 ERCC6Q03468 1493 aa25.74■■□□□ 1.71
PTPN6-222ENST00000543744 ARHGEF11O15085 1522 aa25.74■■□□□ 1.71
PTPN6-222ENST00000543744 EPRSP07814 1512 aaKnown RBP25.73■■□□□ 1.71
PTPN6-222ENST00000543744 HFM1A2PYH4 1435 aa25.73■■□□□ 1.71
PTPN6-222ENST00000543744 PTPRKQ15262 1439 aa25.73■■□□□ 1.71
PTPN6-222ENST00000543744 KIAA0586Q9BVV6 1533 aa25.72■■□□□ 1.71
PTPN6-222ENST00000543744 SIN3AQ96ST3 1273 aa25.72■■□□□ 1.71
PTPN6-222ENST00000543744 TIMELESSQ9UNS1 1208 aa25.71■■□□□ 1.71
PTPN6-222ENST00000543744 EIF4G3O43432 1585 aaKnown RBP25.7■■□□□ 1.7
PTPN6-222ENST00000543744 PTPN23Q9H3S7 1636 aa25.69■■□□□ 1.7
PTPN6-222ENST00000543744 GRIN2AQ12879 1464 aa25.67■■□□□ 1.7
PTPN6-222ENST00000543744 GTF3C3Q9Y5Q9 886 aa25.66■■□□□ 1.7
PTPN6-222ENST00000543744 CDK13Q14004 1512 aaKnown RBP25.65■■□□□ 1.7
PTPN6-222ENST00000543744 NAIPQ13075 1403 aa25.63■■□□□ 1.69
PTPN6-222ENST00000543744 UACAQ9BZF9 1416 aa25.63■■□□□ 1.69
PTPN6-222ENST00000543744 DISP1Q96F81 1524 aa25.63■■□□□ 1.69
PTPN6-222ENST00000543744 KIAA0556O60303 1618 aa25.62■■□□□ 1.69
PTPN6-222ENST00000543744 TCOF1Q13428 1488 aaKnown RBP25.62■■□□□ 1.69
PTPN6-222ENST00000543744 MAGI1Q96QZ7 1491 aaPredicted RBP25.6■■□□□ 1.69
PTPN6-222ENST00000543744 ARID3CA6NKF2 412 aa25.58■■□□□ 1.69
PTPN6-222ENST00000543744 MIA2Q96PC5 1412 aa25.58■■□□□ 1.68
PTPN6-222ENST00000543744 CHMP7Q8WUX9 453 aaPredicted RBP25.55■■□□□ 1.68
PTPN6-222ENST00000543744 SYNJ2O15056 1496 aa25.54■■□□□ 1.68
PTPN6-222ENST00000543744 PPP1R15AO75807 674 aaPredicted RBP25.53■■□□□ 1.68
PTPN6-222ENST00000543744 NUP153P49790 1475 aaKnown RBP25.5■■□□□ 1.67
PTPN6-222ENST00000543744 RAPGEF6Q8TEU7 1601 aa25.5■■□□□ 1.67
PTPN6-222ENST00000543744 RRP7BPQ9NSQ0 103 aa25.49■■□□□ 1.67
PTPN6-222ENST00000543744 CHIC2Q9UKJ5 165 aa25.49■■□□□ 1.67
PTPN6-222ENST00000543744 TONSLQ96HA7 1378 aa25.48■■□□□ 1.67
PTPN6-222ENST00000543744 AKNAQ7Z591 1439 aa25.48■■□□□ 1.67
PTPN6-222ENST00000543744 CEP170Q5SW79 1584 aa25.47■■□□□ 1.67
PTPN6-222ENST00000543744 CDK11AQ9UQ88 783 aaPredicted RBP25.47■■□□□ 1.67
PTPN6-222ENST00000543744 GCC2Q8IWJ2 1684 aa25.46■■□□□ 1.67
PTPN6-222ENST00000543744 FBLN2P98095 1184 aa25.46■■□□□ 1.67
PTPN6-222ENST00000543744 NUP160Q12769 1436 aa25.4■■□□□ 1.66
PTPN6-222ENST00000543744 CARMIL2Q6F5E8 1435 aa25.39■■□□□ 1.66
PTPN6-222ENST00000543744 TRIM52Q96A61 297 aa25.37■■□□□ 1.65
PTPN6-222ENST00000543744 JPH4Q96JJ6 628 aa25.37■■□□□ 1.65
PTPN6-222ENST00000543744 DAPK1P53355 1430 aa25.35■■□□□ 1.65
PTPN6-222ENST00000543744 PLB1Q6P1J6 1458 aa25.35■■□□□ 1.65
PTPN6-222ENST00000543744 TROQ12816 1431 aaPredicted RBP25.34■■□□□ 1.65
PTPN6-222ENST00000543744 KDM6BO15054 1643 aa25.33■■□□□ 1.65
PTPN6-222ENST00000543744 ROCK1Q13464 1354 aa25.33■■□□□ 1.65
PTPN6-222ENST00000543744 DDX10Q13206 875 aaKnown RBP25.33■■□□□ 1.65
PTPN6-222ENST00000543744 PRG4Q92954 1404 aaPredicted RBP25.32■■□□□ 1.64
PTPN6-222ENST00000543744 DNMT1P26358 1616 aaKnown RBP25.31■■□□□ 1.64
PTPN6-222ENST00000543744 ABCC5O15440 1437 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms