RNA–Protein interactions for RNA: ENST00000543324.1

CIT-213, Transcript of citron rho-interacting serine/threonine kinase, human

TSL 3

Gene CIT, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIT-213	ENST00000543324	PPRC1	Q5VV67	1664 aa	Known RBP	12.44	□□□□□ -0.42
CIT-213	ENST00000543324	COL17A1	Q9UMD9	1497 aa	Predicted RBP	12.41	□□□□□ -0.42
CIT-213	ENST00000543324	PCF11	O94913	1555 aa	Known RBP	12.4	□□□□□ -0.42
CIT-213	ENST00000543324	SOGA1	O94964	1423 aa		12.4	□□□□□ -0.42
CIT-213	ENST00000543324	NPM1	P06748	294 aa	Known RBP eCLIP	12.39	□□□□□ -0.43
CIT-213	ENST00000543324	PBRM1	Q86U86	1689 aa		12.37	□□□□□ -0.43
CIT-213	ENST00000543324	ADCY10	Q96PN6	1610 aa		12.37	□□□□□ -0.43
CIT-213	ENST00000543324	NUP160	Q12769	1436 aa		12.34	□□□□□ -0.43
CIT-213	ENST00000543324	SENP3	Q9H4L4	574 aa	Predicted RBP	12.32	□□□□□ -0.44
CIT-213	ENST00000543324	GRIN2A	Q12879	1464 aa		12.32	□□□□□ -0.44
CIT-213	ENST00000543324	PTPRM	P28827	1452 aa		12.31	□□□□□ -0.44
CIT-213	ENST00000543324	TOP2A	P11388	1531 aa	Known RBP	12.3	□□□□□ -0.44
CIT-213	ENST00000543324	GLI2	P10070	1586 aa		12.28	□□□□□ -0.44
CIT-213	ENST00000543324	PRG4	Q92954	1404 aa	Predicted RBP	12.28	□□□□□ -0.44
CIT-213	ENST00000543324	FGD5	Q6ZNL6	1462 aa		12.26	□□□□□ -0.45
CIT-213	ENST00000543324	KIF21B	O75037	1637 aa		12.24	□□□□□ -0.45
CIT-213	ENST00000543324	ADAMTSL3	P82987	1691 aa		12.23	□□□□□ -0.45
CIT-213	ENST00000543324	TEX14	Q8IWB6	1497 aa		12.19	□□□□□ -0.46
CIT-213	ENST00000543324	ABCA5	Q8WWZ7	1642 aa		12.19	□□□□□ -0.46
CIT-213	ENST00000543324	MAP3K4	Q9Y6R4	1608 aa		12.19	□□□□□ -0.46
CIT-213	ENST00000543324	HSPA2	P54652	639 aa		12.18	□□□□□ -0.46
CIT-213	ENST00000543324	ADAMTS12	P58397	1594 aa		12.18	□□□□□ -0.46
CIT-213	ENST00000543324	CCDC88B	A6NC98	1476 aa		12.14	□□□□□ -0.47
CIT-213	ENST00000543324	MED1	Q15648	1581 aa	Predicted RBP	12.14	□□□□□ -0.47
CIT-213	ENST00000543324	PHF23	Q9BUL5	403 aa	Predicted RBP	12.14	□□□□□ -0.47
CIT-213	ENST00000543324	PLB1	Q6P1J6	1458 aa		12.13	□□□□□ -0.47
CIT-213	ENST00000543324	JPH4	Q96JJ6	628 aa		12.12	□□□□□ -0.47
CIT-213	ENST00000543324	ASXL2	Q76L83	1435 aa		12.11	□□□□□ -0.47
CIT-213	ENST00000543324	MADD	Q8WXG6	1647 aa		12.1	□□□□□ -0.47
CIT-213	ENST00000543324	KIAA0586	Q9BVV6	1533 aa		12.09	□□□□□ -0.47
CIT-213	ENST00000543324	IQSEC2	Q5JU85	1478 aa		12.08	□□□□□ -0.48
CIT-213	ENST00000543324	BCORL1	Q5H9F3	1711 aa		12.06	□□□□□ -0.48
CIT-213	ENST00000543324	EPRS	P07814	1512 aa	Known RBP	12.06	□□□□□ -0.48
CIT-213	ENST00000543324	CUX1	P39880	1505 aa		12.06	□□□□□ -0.48
CIT-213	ENST00000543324	ABCA10	Q8WWZ4	1543 aa		12.06	□□□□□ -0.48
CIT-213	ENST00000543324	ABCC2	Q92887	1545 aa		12.06	□□□□□ -0.48
CIT-213	ENST00000543324	RUSC2	Q8N2Y8	1516 aa		12.05	□□□□□ -0.48
CIT-213	ENST00000543324	FHAD1	B1AJZ9	1412 aa		12.04	□□□□□ -0.48
CIT-213	ENST00000543324	CUL7	Q14999	1698 aa		12.01	□□□□□ -0.49
CIT-213	ENST00000543324	RIMS1	Q86UR5	1692 aa	Known RBP	12.01	□□□□□ -0.49
CIT-213	ENST00000543324	LTBP4	Q8N2S1	1624 aa		12	□□□□□ -0.49
CIT-213	ENST00000543324	STRC	Q7RTU9	1775 aa		12	□□□□□ -0.49
CIT-213	ENST00000543324	YEATS2	Q9ULM3	1422 aa		11.97	□□□□□ -0.49
CIT-213	ENST00000543324	DMRT2	Q9Y5R5	561 aa		11.96	□□□□□ -0.49
CIT-213	ENST00000543324	MAGI3	Q5TCQ9	1506 aa		11.94	□□□□□ -0.5
CIT-213	ENST00000543324	SRCAP	Q6ZRS2	3230 aa		11.92	□□□□□ -0.5
CIT-213	ENST00000543324	CFAP43	Q8NDM7	1665 aa		11.91	□□□□□ -0.5
CIT-213	ENST00000543324	UHRF1BP1L	A0JNW5	1464 aa		11.89	□□□□□ -0.51
CIT-213	ENST00000543324	PTPRT	O14522	1441 aa		11.89	□□□□□ -0.51
CIT-213	ENST00000543324	PTPRG	P23470	1445 aa		11.89	□□□□□ -0.51
CIT-213	ENST00000543324	PREX1	Q8TCU6	1659 aa		11.88	□□□□□ -0.51
CIT-213	ENST00000543324	ERICH3	Q5RHP9	1530 aa		11.88	□□□□□ -0.51
CIT-213	ENST00000543324	ARAP3	Q8WWN8	1544 aa		11.88	□□□□□ -0.51
CIT-213	ENST00000543324	UBAP1L	F5GYI3	381 aa		11.86	□□□□□ -0.51
CIT-213	ENST00000543324	KDM5B	Q9UGL1	1544 aa		11.86	□□□□□ -0.51
CIT-213	ENST00000543324	HSPA1L	P34931	641 aa		11.84	□□□□□ -0.51
CIT-213	ENST00000543324	CD109	Q6YHK3	1445 aa		11.84	□□□□□ -0.51
CIT-213	ENST00000543324	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.83	□□□□□ -0.52
CIT-213	ENST00000543324	PLPPR3	Q6T4P5	718 aa		11.83	□□□□□ -0.52
CIT-213	ENST00000543324	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.83	□□□□□ -0.52
CIT-213	ENST00000543324	WDR7	Q9Y4E6	1490 aa		11.81	□□□□□ -0.52
CIT-213	ENST00000543324	TTC37	Q6PGP7	1564 aa		11.8	□□□□□ -0.52
CIT-213	ENST00000543324	TNIK	Q9UKE5	1360 aa		11.79	□□□□□ -0.52
CIT-213	ENST00000543324	UACA	Q9BZF9	1416 aa		11.78	□□□□□ -0.52
CIT-213	ENST00000543324	RGS17	Q9UGC6	210 aa	Predicted RBP	11.76	□□□□□ -0.53
CIT-213	ENST00000543324	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.76	□□□□□ -0.53
CIT-213	ENST00000543324	FER1L4	A9Z1Z3	1794 aa		11.74	□□□□□ -0.53
CIT-213	ENST00000543324	ARHGEF40	Q8TER5	1519 aa		11.74	□□□□□ -0.53
CIT-213	ENST00000543324	FRMPD1	Q5SYB0	1578 aa		11.73	□□□□□ -0.53
CIT-213	ENST00000543324	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.71	□□□□□ -0.53
CIT-213	ENST00000543324	SETD1A	O15047	1707 aa	Known RBP	11.71	□□□□□ -0.54
CIT-213	ENST00000543324	UHRF1BP1	Q6BDS2	1440 aa		11.7	□□□□□ -0.54
CIT-213	ENST00000543324	POGZ	Q7Z3K3	1410 aa		11.7	□□□□□ -0.54
CIT-213	ENST00000543324	SIGLEC1	Q9BZZ2	1709 aa		11.69	□□□□□ -0.54
CIT-213	ENST00000543324	RAPGEF3	O95398	923 aa		11.69	□□□□□ -0.54
CIT-213	ENST00000543324	CARMIL2	Q6F5E8	1435 aa		11.69	□□□□□ -0.54
CIT-213	ENST00000543324	PHLDB1	Q86UU1	1377 aa		11.68	□□□□□ -0.54
CIT-213	ENST00000543324	FANCA	O15360	1455 aa		11.68	□□□□□ -0.54
CIT-213	ENST00000543324	SCAF1	Q9H7N4	1312 aa	Known RBP	11.66	□□□□□ -0.54
CIT-213	ENST00000543324	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.65	□□□□□ -0.54
CIT-213	ENST00000543324	SETD1B	Q9UPS6	1966 aa	Known RBP	11.65	□□□□□ -0.54
CIT-213	ENST00000543324	NCOA1	Q15788	1441 aa		11.65	□□□□□ -0.54
CIT-213	ENST00000543324	PIP4K2B	P78356	416 aa		11.64	□□□□□ -0.55
CIT-213	ENST00000543324	IFFO2	Q5TF58	517 aa		11.64	□□□□□ -0.55
CIT-213	ENST00000543324	POTEA	Q6S8J7	498 aa		11.62	□□□□□ -0.55
CIT-213	ENST00000543324	ARHGEF12	Q9NZN5	1544 aa		11.61	□□□□□ -0.55
CIT-213	ENST00000543324	KCNH8	Q96L42	1107 aa		11.61	□□□□□ -0.55
CIT-213	ENST00000543324	KIAA0556	O60303	1618 aa		11.6	□□□□□ -0.55
CIT-213	ENST00000543324	BIVM-ERCC5	R4GMW8	1640 aa		11.6	□□□□□ -0.55
CIT-213	ENST00000543324	NEO1	Q92859	1461 aa		11.59	□□□□□ -0.55
CIT-213	ENST00000543324	CEBPA	P49715	358 aa	Predicted RBP	11.59	□□□□□ -0.55
CIT-213	ENST00000543324	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.59	□□□□□ -0.55
CIT-213	ENST00000543324	TOM1	O60784	492 aa		11.58	□□□□□ -0.56
CIT-213	ENST00000543324	AKNA	Q7Z591	1439 aa		11.58	□□□□□ -0.56
CIT-213	ENST00000543324	DISP1	Q96F81	1524 aa		11.57	□□□□□ -0.56
CIT-213	ENST00000543324	RICTOR	Q6R327	1708 aa		11.57	□□□□□ -0.56
CIT-213	ENST00000543324	MLEC	Q14165	292 aa		11.55	□□□□□ -0.56
CIT-213	ENST00000543324	ALK	Q9UM73	1620 aa		11.55	□□□□□ -0.56
CIT-213	ENST00000543324	ABCA9	Q8IUA7	1624 aa		11.54	□□□□□ -0.56
CIT-213	ENST00000543324	ZMYM4	Q5VZL5	1548 aa		11.52	□□□□□ -0.57

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