RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 CLASP1Q7Z460 1538 aa9.51□□□□□ -0.89
NPIPB3-211ENST00000542953 ABCC8Q09428 1581 aa9.51□□□□□ -0.89
NPIPB3-211ENST00000542953 AQRO60306 1485 aaKnown RBP eCLIP9.51□□□□□ -0.89
NPIPB3-211ENST00000542953 TOP2AP11388 1531 aaKnown RBP9.51□□□□□ -0.89
NPIPB3-211ENST00000542953 TARBP1Q13395 1621 aaKnown RBP9.5□□□□□ -0.89
NPIPB3-211ENST00000542953 PRDM2Q13029 1718 aa9.5□□□□□ -0.89
NPIPB3-211ENST00000542953 DNMBPQ6XZF7 1577 aa9.47□□□□□ -0.89
NPIPB3-211ENST00000542953 FBLN2P98095 1184 aa9.47□□□□□ -0.89
NPIPB3-211ENST00000542953 ILDR1Q86SU0 546 aaPredicted RBP9.46□□□□□ -0.9
NPIPB3-211ENST00000542953 AKT1S1Q96B36 256 aa9.44□□□□□ -0.9
NPIPB3-211ENST00000542953 SYNJ1O43426 1573 aa9.43□□□□□ -0.9
NPIPB3-211ENST00000542953 ZBTB12Q9Y330 459 aaPredicted RBP9.43□□□□□ -0.9
NPIPB3-211ENST00000542953 POLA1P09884 1462 aaPredicted RBP9.42□□□□□ -0.9
NPIPB3-211ENST00000542953 GAPVD1Q14C86 1478 aa9.42□□□□□ -0.9
NPIPB3-211ENST00000542953 SNAPC4Q5SXM2 1469 aa9.41□□□□□ -0.9
NPIPB3-211ENST00000542953 WDR97A6NE52 1622 aa9.41□□□□□ -0.9
NPIPB3-211ENST00000542953 MAGI1Q96QZ7 1491 aaPredicted RBP9.4□□□□□ -0.9
NPIPB3-211ENST00000542953 SP7Q8TDD2 431 aaPredicted RBP9.39□□□□□ -0.91
NPIPB3-211ENST00000542953 CCDC88BA6NC98 1476 aa9.38□□□□□ -0.91
NPIPB3-211ENST00000542953 TDRD9Q8NDG6 1382 aaKnown RBP9.37□□□□□ -0.91
NPIPB3-211ENST00000542953 SYNJ2O15056 1496 aa9.37□□□□□ -0.91
NPIPB3-211ENST00000542953 CHMP7Q8WUX9 453 aaPredicted RBP9.37□□□□□ -0.91
NPIPB3-211ENST00000542953 RAD54L2Q9Y4B4 1467 aa9.36□□□□□ -0.91
NPIPB3-211ENST00000542953 SOGA1O94964 1423 aa9.35□□□□□ -0.91
NPIPB3-211ENST00000542953 GRIN2BQ13224 1484 aa9.34□□□□□ -0.91
NPIPB3-211ENST00000542953 KDM4FA0A1W2PPD8 638 aa9.32□□□□□ -0.92
NPIPB3-211ENST00000542953 REM2Q8IYK8 340 aaPredicted RBP9.31□□□□□ -0.92
NPIPB3-211ENST00000542953 FOXD4L1Q9NU39 408 aa9.3□□□□□ -0.92
NPIPB3-211ENST00000542953 ATF5Q9Y2D1 282 aaPredicted RBP9.29□□□□□ -0.92
NPIPB3-211ENST00000542953 ERCC6L2Q5T890 1561 aa9.29□□□□□ -0.92
NPIPB3-211ENST00000542953 KIF13AQ9H1H9 1805 aa9.28□□□□□ -0.92
NPIPB3-211ENST00000542953 FGD5Q6ZNL6 1462 aa9.28□□□□□ -0.92
NPIPB3-211ENST00000542953 PIP4P2Q8N4L2 257 aa9.28□□□□□ -0.92
NPIPB3-211ENST00000542953 CEP170Q5SW79 1584 aa9.24□□□□□ -0.93
NPIPB3-211ENST00000542953 NUP160Q12769 1436 aa9.24□□□□□ -0.93
NPIPB3-211ENST00000542953 ABCC10Q5T3U5 1492 aa9.24□□□□□ -0.93
NPIPB3-211ENST00000542953 SLC4A1APQ9BWU0 796 aaKnown RBP9.24□□□□□ -0.93
NPIPB3-211ENST00000542953 GRIN2AQ12879 1464 aa9.22□□□□□ -0.93
NPIPB3-211ENST00000542953 CUX1P39880 1505 aa9.22□□□□□ -0.93
NPIPB3-211ENST00000542953 SHROOM2Q13796 1616 aa9.22□□□□□ -0.93
NPIPB3-211ENST00000542953 PBRM1Q86U86 1689 aa9.22□□□□□ -0.93
NPIPB3-211ENST00000542953 FXR2P51116 673 aaKnown RBP eCLIP9.21□□□□□ -0.94
NPIPB3-211ENST00000542953 HAX1O00165 279 aa9.2□□□□□ -0.94
NPIPB3-211ENST00000542953 PITPNM1O00562 1244 aa9.2□□□□□ -0.94
NPIPB3-211ENST00000542953 MAPKBP1O60336 1514 aa9.2□□□□□ -0.94
NPIPB3-211ENST00000542953 ABCA5Q8WWZ7 1642 aa9.2□□□□□ -0.94
NPIPB3-211ENST00000542953 FAM69CQ0P6D2 419 aa9.19□□□□□ -0.94
NPIPB3-211ENST00000542953 ABCA10Q8WWZ4 1543 aa9.19□□□□□ -0.94
NPIPB3-211ENST00000542953 DIP2BQ9P265 1576 aa9.19□□□□□ -0.94
NPIPB3-211ENST00000542953 KDM6BO15054 1643 aa9.19□□□□□ -0.94
NPIPB3-211ENST00000542953 ADAMTS12P58397 1594 aa9.16□□□□□ -0.94
NPIPB3-211ENST00000542953 HECW2Q9P2P5 1572 aa9.15□□□□□ -0.95
NPIPB3-211ENST00000542953 ADGRL1O94910 1474 aa9.14□□□□□ -0.95
NPIPB3-211ENST00000542953 PRG4Q92954 1404 aaPredicted RBP9.14□□□□□ -0.95
NPIPB3-211ENST00000542953 FHAD1B1AJZ9 1412 aa9.13□□□□□ -0.95
NPIPB3-211ENST00000542953 FBXO41Q8TF61 875 aa9.12□□□□□ -0.95
NPIPB3-211ENST00000542953 NPM1P06748 294 aaKnown RBP eCLIP9.1□□□□□ -0.95
NPIPB3-211ENST00000542953 ATXN8OSP0DMR3 200 aa9.1□□□□□ -0.95
NPIPB3-211ENST00000542953 ADCY10Q96PN6 1610 aa9.09□□□□□ -0.95
NPIPB3-211ENST00000542953 SPDYE2BA6NHP3 402 aa9.08□□□□□ -0.96
NPIPB3-211ENST00000542953 SPDYE6P0CI01 402 aa9.08□□□□□ -0.96
NPIPB3-211ENST00000542953 SPDYE2Q495Y8 402 aa9.08□□□□□ -0.96
NPIPB3-211ENST00000542953 JPH4Q96JJ6 628 aa9.08□□□□□ -0.96
NPIPB3-211ENST00000542953 ERICH3Q5RHP9 1530 aa9.05□□□□□ -0.96
NPIPB3-211ENST00000542953 WRNQ14191 1432 aaPredicted RBP eCLIP9.05□□□□□ -0.96
NPIPB3-211ENST00000542953 RUSC2Q8N2Y8 1516 aa9.04□□□□□ -0.96
NPIPB3-211ENST00000542953 TSPOAP1O95153 1857 aa9.03□□□□□ -0.96
NPIPB3-211ENST00000542953 PPRC1Q5VV67 1664 aaKnown RBP9.02□□□□□ -0.97
NPIPB3-211ENST00000542953 GLI2P10070 1586 aa9.02□□□□□ -0.97
NPIPB3-211ENST00000542953 COL17A1Q9UMD9 1497 aaPredicted RBP9.02□□□□□ -0.97
NPIPB3-211ENST00000542953 EVX2Q03828 476 aa9.01□□□□□ -0.97
NPIPB3-211ENST00000542953 ZBTB22O15209 634 aa9□□□□□ -0.97
NPIPB3-211ENST00000542953 SPDYE1Q8NFV5 336 aaPredicted RBP8.99□□□□□ -0.97
NPIPB3-211ENST00000542953 LMTK3Q96Q04 1460 aa8.99□□□□□ -0.97
NPIPB3-211ENST00000542953 PLB1Q6P1J6 1458 aa8.98□□□□□ -0.97
NPIPB3-211ENST00000542953 ABCC2Q92887 1545 aa8.97□□□□□ -0.97
NPIPB3-211ENST00000542953 PRKAR2AP13861 404 aaKnown RBP8.97□□□□□ -0.97
NPIPB3-211ENST00000542953 TOP2BQ02880 1626 aa8.97□□□□□ -0.97
NPIPB3-211ENST00000542953 ASXL2Q76L83 1435 aa8.97□□□□□ -0.97
NPIPB3-211ENST00000542953 KIAA0586Q9BVV6 1533 aa8.95□□□□□ -0.98
NPIPB3-211ENST00000542953 BIVM-ERCC5R4GMW8 1640 aa8.94□□□□□ -0.98
NPIPB3-211ENST00000542953 TEX14Q8IWB6 1497 aa8.94□□□□□ -0.98
NPIPB3-211ENST00000542953 SOCS7O14512 581 aa8.93□□□□□ -0.98
NPIPB3-211ENST00000542953 CLEC11AQ9Y240 323 aa8.93□□□□□ -0.98
NPIPB3-211ENST00000542953 PTPRGP23470 1445 aa8.93□□□□□ -0.98
NPIPB3-211ENST00000542953 MAP3K4Q9Y6R4 1608 aa8.93□□□□□ -0.98
NPIPB3-211ENST00000542953 EPRSP07814 1512 aaKnown RBP8.92□□□□□ -0.98
NPIPB3-211ENST00000542953 UHRF1BP1LA0JNW5 1464 aa8.92□□□□□ -0.98
NPIPB3-211ENST00000542953 C19orf67A6NJJ6 358 aa8.92□□□□□ -0.98
NPIPB3-211ENST00000542953 SSUH2Q9Y2M2 353 aa8.91□□□□□ -0.98
NPIPB3-211ENST00000542953 TNIKQ9UKE5 1360 aa8.89□□□□□ -0.99
NPIPB3-211ENST00000542953 ZNF692Q9BU19 519 aaPredicted RBP8.89□□□□□ -0.99
NPIPB3-211ENST00000542953 ILDR2Q71H61 639 aa8.88□□□□□ -0.99
NPIPB3-211ENST00000542953 KDM5BQ9UGL1 1544 aa8.88□□□□□ -0.99
NPIPB3-211ENST00000542953 UACAQ9BZF9 1416 aa8.87□□□□□ -0.99
NPIPB3-211ENST00000542953 MKRN4PQ13434 485 aaPredicted RBP8.86□□□□□ -0.99
NPIPB3-211ENST00000542953 CUL7Q14999 1698 aa8.85□□□□□ -0.99
NPIPB3-211ENST00000542953 PTPRMP28827 1452 aa8.85□□□□□ -0.99
NPIPB3-211ENST00000542953 CARMIL2Q6F5E8 1435 aa8.85□□□□□ -0.99
NPIPB3-211ENST00000542953 MAGI3Q5TCQ9 1506 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms