RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 KIF21BO75037 1637 aa28.1■■■□□ 2.09
LIG1-204ENST00000542460 ARHGEF11O15085 1522 aa28.05■■■□□ 2.08
LIG1-204ENST00000542460 CLASP1Q7Z460 1538 aa28.04■■■□□ 2.08
LIG1-204ENST00000542460 KIAA0586Q9BVV6 1533 aa28.02■■■□□ 2.08
LIG1-204ENST00000542460 GOLGA3Q08378 1498 aa28.01■■■□□ 2.07
LIG1-204ENST00000542460 EHMT2Q96KQ7 1210 aa28■■■□□ 2.07
LIG1-204ENST00000542460 UBTFP17480 764 aaKnown RBP27.95■■■□□ 2.06
LIG1-204ENST00000542460 JPH4Q96JJ6 628 aa27.92■■■□□ 2.06
LIG1-204ENST00000542460 IQGAP2Q13576 1575 aa27.89■■■□□ 2.06
LIG1-204ENST00000542460 CTTNBP2Q8WZ74 1663 aa27.87■■■□□ 2.05
LIG1-204ENST00000542460 SHROOM2Q13796 1616 aa27.84■■■□□ 2.05
LIG1-204ENST00000542460 CYB5RLQ6IPT4 315 aa27.82■■■□□ 2.04
LIG1-204ENST00000542460 PRG4Q92954 1404 aaPredicted RBP27.81■■■□□ 2.04
LIG1-204ENST00000542460 LOC105371045A0A1W2PR82 267 aa27.8■■■□□ 2.04
LIG1-204ENST00000542460 ARAP1Q96P48 1450 aa27.8■■■□□ 2.04
LIG1-204ENST00000542460 UGGT2Q9NYU1 1516 aa27.77■■■□□ 2.04
LIG1-204ENST00000542460 TNIKQ9UKE5 1360 aa27.77■■■□□ 2.04
LIG1-204ENST00000542460 CARMIL2Q6F5E8 1435 aa27.73■■■□□ 2.03
LIG1-204ENST00000542460 RANGAP1P46060 587 aaPredicted RBP27.71■■■□□ 2.03
LIG1-204ENST00000542460 ERCC6L2Q5T890 1561 aa27.69■■■□□ 2.02
LIG1-204ENST00000542460 DISP1Q96F81 1524 aa27.68■■■□□ 2.02
LIG1-204ENST00000542460 KIAA0556O60303 1618 aa27.61■■■□□ 2.01
LIG1-204ENST00000542460 P3H3Q8IVL6 736 aa27.58■■■□□ 2.01
LIG1-204ENST00000542460 SAMD9Q5K651 1589 aa27.58■■■□□ 2.01
LIG1-204ENST00000542460 EFCAB5A4FU69 1503 aa27.58■■■□□ 2
LIG1-204ENST00000542460 PTPRGP23470 1445 aa27.55■■■□□ 2
LIG1-204ENST00000542460 CLIP1P30622 1438 aa27.54■■■□□ 2
LIG1-204ENST00000542460 TTBK1Q5TCY1 1321 aaPredicted RBP27.52■■■□□ 2
LIG1-204ENST00000542460 ARHGAP35Q9NRY4 1499 aa27.52■■■□□ 2
LIG1-204ENST00000542460 CEP162Q5TB80 1403 aa27.51■■□□□ 1.99
LIG1-204ENST00000542460 FHOD3Q2V2M9 1422 aa27.48■■□□□ 1.99
LIG1-204ENST00000542460 TRHP20396 242 aaPredicted RBP27.43■■□□□ 1.98
LIG1-204ENST00000542460 UACAQ9BZF9 1416 aa27.36■■□□□ 1.97
LIG1-204ENST00000542460 FMN1Q68DA7 1419 aa27.36■■□□□ 1.97
LIG1-204ENST00000542460 PLB1Q6P1J6 1458 aa27.33■■□□□ 1.96
LIG1-204ENST00000542460 UHRF1BP1LA0JNW5 1464 aa27.3■■□□□ 1.96
LIG1-204ENST00000542460 ABCA8O94911 1581 aa27.29■■□□□ 1.96
LIG1-204ENST00000542460 ABCC2Q92887 1545 aa27.28■■□□□ 1.96
LIG1-204ENST00000542460 ADCY10Q96PN6 1610 aa27.25■■□□□ 1.95
LIG1-204ENST00000542460 NPM1P06748 294 aaKnown RBP eCLIP27.23■■□□□ 1.95
LIG1-204ENST00000542460 RAPGEF6Q8TEU7 1601 aa27.22■■□□□ 1.95
LIG1-204ENST00000542460 CASKIN1Q8WXD9 1431 aa27.18■■□□□ 1.94
LIG1-204ENST00000542460 ATP1B4Q9UN42 357 aaPredicted RBP27.18■■□□□ 1.94
LIG1-204ENST00000542460 NUP153P49790 1475 aaKnown RBP27.17■■□□□ 1.94
LIG1-204ENST00000542460 KDM5BQ9UGL1 1544 aa27.16■■□□□ 1.94
LIG1-204ENST00000542460 VPS8Q8N3P4 1428 aa27.15■■□□□ 1.94
LIG1-204ENST00000542460 FYCO1Q9BQS8 1478 aa27.12■■□□□ 1.93
LIG1-204ENST00000542460 ARID3CA6NKF2 412 aa27.12■■□□□ 1.93
LIG1-204ENST00000542460 HECW1Q76N89 1606 aa27.12■■□□□ 1.93
LIG1-204ENST00000542460 PCF11O94913 1555 aaKnown RBP27.11■■□□□ 1.93
LIG1-204ENST00000542460 ATP10BO94823 1461 aa27.1■■□□□ 1.93
LIG1-204ENST00000542460 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.08■■□□□ 1.93
LIG1-204ENST00000542460 HNRNPUL2Q1KMD3 747 aaKnown RBP27.08■■□□□ 1.93
LIG1-204ENST00000542460 EPRSP07814 1512 aaKnown RBP27.07■■□□□ 1.92
LIG1-204ENST00000542460 ZCCHC11Q5TAX3 1644 aaKnown RBP27.06■■□□□ 1.92
LIG1-204ENST00000542460 MAPKBP1O60336 1514 aa27.02■■□□□ 1.92
LIG1-204ENST00000542460 CCDC18Q5T9S5 1454 aa27.01■■□□□ 1.92
LIG1-204ENST00000542460 CDK13Q14004 1512 aaKnown RBP27■■□□□ 1.91
LIG1-204ENST00000542460 ASXL2Q76L83 1435 aa27■■□□□ 1.91
LIG1-204ENST00000542460 CDK11AQ9UQ88 783 aaPredicted RBP26.98■■□□□ 1.91
LIG1-204ENST00000542460 PLEKHD1A6NEE1 506 aa26.97■■□□□ 1.91
LIG1-204ENST00000542460 WDR7Q9Y4E6 1490 aa26.94■■□□□ 1.9
LIG1-204ENST00000542460 LRRIQ1Q96JM4 1722 aa26.93■■□□□ 1.9
LIG1-204ENST00000542460 KIF13AQ9H1H9 1805 aa26.93■■□□□ 1.9
LIG1-204ENST00000542460 APLP2Q06481 763 aa26.9■■□□□ 1.9
LIG1-204ENST00000542460 KCNH8Q96L42 1107 aa26.87■■□□□ 1.89
LIG1-204ENST00000542460 MAP3K1Q13233 1512 aa26.86■■□□□ 1.89
LIG1-204ENST00000542460 ABCC10Q5T3U5 1492 aa26.86■■□□□ 1.89
LIG1-204ENST00000542460 TIAM1Q13009 1591 aa26.84■■□□□ 1.89
LIG1-204ENST00000542460 TROQ12816 1431 aaPredicted RBP26.83■■□□□ 1.89
LIG1-204ENST00000542460 FAM69CQ0P6D2 419 aa26.82■■□□□ 1.88
LIG1-204ENST00000542460 MTUS2Q5JR59 1369 aa26.81■■□□□ 1.88
LIG1-204ENST00000542460 CFAP43Q8NDM7 1665 aa26.79■■□□□ 1.88
LIG1-204ENST00000542460 MAGI3Q5TCQ9 1506 aa26.79■■□□□ 1.88
LIG1-204ENST00000542460 DIP2BQ9P265 1576 aa26.78■■□□□ 1.88
LIG1-204ENST00000542460 GLI2P10070 1586 aa26.75■■□□□ 1.87
LIG1-204ENST00000542460 LRRC9Q6ZRR7 1453 aa26.75■■□□□ 1.87
LIG1-204ENST00000542460 KANK4Q5T7N3 995 aaPredicted RBP26.75■■□□□ 1.87
LIG1-204ENST00000542460 EHBP1L1Q8N3D4 1523 aa26.72■■□□□ 1.87
LIG1-204ENST00000542460 KIF14Q15058 1648 aa26.69■■□□□ 1.86
LIG1-204ENST00000542460 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.67■■□□□ 1.86
LIG1-204ENST00000542460 ABCA9Q8IUA7 1624 aa26.67■■□□□ 1.86
LIG1-204ENST00000542460 CD109Q6YHK3 1445 aa26.65■■□□□ 1.86
LIG1-204ENST00000542460 TSPOAP1O95153 1857 aa26.63■■□□□ 1.85
LIG1-204ENST00000542460 MAP3K4Q9Y6R4 1608 aa26.62■■□□□ 1.85
LIG1-204ENST00000542460 TTC37Q6PGP7 1564 aa26.61■■□□□ 1.85
LIG1-204ENST00000542460 NCOA2Q15596 1464 aa26.59■■□□□ 1.85
LIG1-204ENST00000542460 SUPT6HQ7KZ85 1726 aaKnown RBP26.58■■□□□ 1.85
LIG1-204ENST00000542460 CCNB3Q8WWL7 1395 aa26.57■■□□□ 1.84
LIG1-204ENST00000542460 PLCH2O75038 1416 aa26.56■■□□□ 1.84
LIG1-204ENST00000542460 PPARGC1BQ86YN6 1023 aaKnown RBP26.55■■□□□ 1.84
LIG1-204ENST00000542460 GPATCH8Q9UKJ3 1502 aaKnown RBP26.52■■□□□ 1.84
LIG1-204ENST00000542460 TEX14Q8IWB6 1497 aa26.52■■□□□ 1.84
LIG1-204ENST00000542460 KDM6BO15054 1643 aa26.5■■□□□ 1.83
LIG1-204ENST00000542460 ARAP3Q8WWN8 1544 aa26.49■■□□□ 1.83
LIG1-204ENST00000542460 EFCAB2Q5VUJ9 269 aa26.49■■□□□ 1.83
LIG1-204ENST00000542460 MYO5CQ9NQX4 1742 aa26.49■■□□□ 1.83
LIG1-204ENST00000542460 CFDP1Q9UEE9 299 aaPredicted RBP26.48■■□□□ 1.83
LIG1-204ENST00000542460 PPRC1Q5VV67 1664 aaKnown RBP26.47■■□□□ 1.83
LIG1-204ENST00000542460 FANCAO15360 1455 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms