RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 ERCC6Q03468 1493 aa16.34■□□□□ 0.21
CDH3-203ENST00000542274 MRC2Q9UBG0 1479 aa16.34■□□□□ 0.21
CDH3-203ENST00000542274 ABCA10Q8WWZ4 1543 aa16.34■□□□□ 0.21
CDH3-203ENST00000542274 IGF1RP08069 1367 aa16.33■□□□□ 0.2
CDH3-203ENST00000542274 NCBP3Q53F19 620 aaKnown RBP16.32■□□□□ 0.2
CDH3-203ENST00000542274 WDR97A6NE52 1622 aa16.32■□□□□ 0.2
CDH3-203ENST00000542274 TDRD9Q8NDG6 1382 aaKnown RBP16.31■□□□□ 0.2
CDH3-203ENST00000542274 ERICH3Q5RHP9 1530 aa16.29■□□□□ 0.2
CDH3-203ENST00000542274 KLHL34Q8N239 644 aa16.29■□□□□ 0.2
CDH3-203ENST00000542274 CLIP1P30622 1438 aa16.28■□□□□ 0.2
CDH3-203ENST00000542274 TARBP1Q13395 1621 aaKnown RBP16.26■□□□□ 0.19
CDH3-203ENST00000542274 CARMIL1Q5VZK9 1371 aa16.26■□□□□ 0.19
CDH3-203ENST00000542274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.25■□□□□ 0.19
CDH3-203ENST00000542274 WDR62O43379 1518 aa16.24■□□□□ 0.19
CDH3-203ENST00000542274 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
CDH3-203ENST00000542274 ABCA5Q8WWZ7 1642 aa16.23■□□□□ 0.19
CDH3-203ENST00000542274 GAPVD1Q14C86 1478 aa16.21■□□□□ 0.19
CDH3-203ENST00000542274 AEBP2Q6ZN18 517 aaPredicted RBP16.21■□□□□ 0.19
CDH3-203ENST00000542274 AQRO60306 1485 aaKnown RBP eCLIP16.19■□□□□ 0.18
CDH3-203ENST00000542274 TSHZ2Q9NRE2 1034 aa16.19■□□□□ 0.18
CDH3-203ENST00000542274 ZNF608Q9ULD9 1512 aaPredicted RBP16.18■□□□□ 0.18
CDH3-203ENST00000542274 CUL7Q14999 1698 aa16.15■□□□□ 0.18
CDH3-203ENST00000542274 PBRM1Q86U86 1689 aa16.15■□□□□ 0.18
CDH3-203ENST00000542274 VPS8Q8N3P4 1428 aa16.14■□□□□ 0.17
CDH3-203ENST00000542274 IFT140Q96RY7 1462 aa16.13■□□□□ 0.17
CDH3-203ENST00000542274 CCER1Q8TC90 406 aaPredicted RBP16.1■□□□□ 0.17
CDH3-203ENST00000542274 PDIA4P13667 645 aaKnown RBP16.1■□□□□ 0.17
CDH3-203ENST00000542274 ERICH6BQ5W0A0 696 aa16.1■□□□□ 0.17
CDH3-203ENST00000542274 ARAP1Q96P48 1450 aa16.09■□□□□ 0.17
CDH3-203ENST00000542274 NEFLP07196 543 aa16.09■□□□□ 0.17
CDH3-203ENST00000542274 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.09■□□□□ 0.17
CDH3-203ENST00000542274 PDE4CQ08493 712 aa16.08■□□□□ 0.16
CDH3-203ENST00000542274 EIF4G3O43432 1585 aaKnown RBP16.07■□□□□ 0.16
CDH3-203ENST00000542274 ARHGAP35Q9NRY4 1499 aa16.07■□□□□ 0.16
CDH3-203ENST00000542274 HNRNPUL2Q1KMD3 747 aaKnown RBP16.05■□□□□ 0.16
CDH3-203ENST00000542274 P3H3Q8IVL6 736 aa16.05■□□□□ 0.16
CDH3-203ENST00000542274 CTTNBP2Q8WZ74 1663 aa16.05■□□□□ 0.16
CDH3-203ENST00000542274 GRIN2BQ13224 1484 aa16.04■□□□□ 0.16
CDH3-203ENST00000542274 ADAMTS12P58397 1594 aa16.03■□□□□ 0.16
CDH3-203ENST00000542274 ARXQ96QS3 562 aa16.03■□□□□ 0.16
CDH3-203ENST00000542274 KANK4Q5T7N3 995 aaPredicted RBP16.01■□□□□ 0.15
CDH3-203ENST00000542274 SNAPC4Q5SXM2 1469 aa16■□□□□ 0.15
CDH3-203ENST00000542274 FHAD1B1AJZ9 1412 aa15.99■□□□□ 0.15
CDH3-203ENST00000542274 FHOD3Q2V2M9 1422 aa15.95■□□□□ 0.14
CDH3-203ENST00000542274 TIMELESSQ9UNS1 1208 aa15.95■□□□□ 0.14
CDH3-203ENST00000542274 FBLN2P98095 1184 aa15.93■□□□□ 0.14
CDH3-203ENST00000542274 PLPPR3Q6T4P5 718 aa15.92■□□□□ 0.14
CDH3-203ENST00000542274 DEKP35659 375 aaKnown RBP15.91■□□□□ 0.14
CDH3-203ENST00000542274 FGD1P98174 961 aa15.89■□□□□ 0.13
CDH3-203ENST00000542274 ATP1B4Q9UN42 357 aaPredicted RBP15.89■□□□□ 0.13
CDH3-203ENST00000542274 DIEXFQ68CQ4 756 aaKnown RBP15.88■□□□□ 0.13
CDH3-203ENST00000542274 BCL11BQ9C0K0 894 aaPredicted RBP15.88■□□□□ 0.13
CDH3-203ENST00000542274 GRIN2AQ12879 1464 aa15.88■□□□□ 0.13
CDH3-203ENST00000542274 A0A0U1RQG5 324 aaPredicted RBP15.88■□□□□ 0.13
CDH3-203ENST00000542274 CHMP7Q8WUX9 453 aaPredicted RBP15.88■□□□□ 0.13
CDH3-203ENST00000542274 EFCAB5A4FU69 1503 aa15.87■□□□□ 0.13
CDH3-203ENST00000542274 MAGI1Q96QZ7 1491 aaPredicted RBP15.87■□□□□ 0.13
CDH3-203ENST00000542274 PCF11O94913 1555 aaKnown RBP15.86■□□□□ 0.13
CDH3-203ENST00000542274 IQGAP2Q13576 1575 aa15.86■□□□□ 0.13
CDH3-203ENST00000542274 MYT1LQ9UL68 1186 aa15.86■□□□□ 0.13
CDH3-203ENST00000542274 SAMD9Q5K651 1589 aa15.85■□□□□ 0.13
CDH3-203ENST00000542274 YTHDC1Q96MU7 727 aaKnown RBP15.85■□□□□ 0.13
CDH3-203ENST00000542274 SYNJ2O15056 1496 aa15.84■□□□□ 0.13
CDH3-203ENST00000542274 CEP170Q5SW79 1584 aa15.82■□□□□ 0.12
CDH3-203ENST00000542274 RTN4Q9NQC3 1192 aaKnown RBP15.81■□□□□ 0.12
CDH3-203ENST00000542274 SUPT16HQ9Y5B9 1047 aaKnown RBP15.81■□□□□ 0.12
CDH3-203ENST00000542274 ITGAEP38570 1179 aa15.8■□□□□ 0.12
CDH3-203ENST00000542274 TIAM1Q13009 1591 aa15.78■□□□□ 0.12
CDH3-203ENST00000542274 KIAA0586Q9BVV6 1533 aa15.77■□□□□ 0.12
CDH3-203ENST00000542274 CHD1O14646 1710 aa15.76■□□□□ 0.11
CDH3-203ENST00000542274 ZMYND15Q9H091 742 aa15.75■□□□□ 0.11
CDH3-203ENST00000542274 FMN1Q68DA7 1419 aa15.75■□□□□ 0.11
CDH3-203ENST00000542274 LRRIQ1Q96JM4 1722 aa15.74■□□□□ 0.11
CDH3-203ENST00000542274 CASKIN1Q8WXD9 1431 aa15.74■□□□□ 0.11
CDH3-203ENST00000542274 UGGT2Q9NYU1 1516 aa15.73■□□□□ 0.11
CDH3-203ENST00000542274 FYCO1Q9BQS8 1478 aa15.73■□□□□ 0.11
CDH3-203ENST00000542274 CFAP43Q8NDM7 1665 aa15.73■□□□□ 0.11
CDH3-203ENST00000542274 ARID3CA6NKF2 412 aa15.73■□□□□ 0.11
CDH3-203ENST00000542274 AAMPQ13685 434 aa15.73■□□□□ 0.11
CDH3-203ENST00000542274 NUP160Q12769 1436 aa15.72■□□□□ 0.11
CDH3-203ENST00000542274 DISP1Q96F81 1524 aa15.71■□□□□ 0.11
CDH3-203ENST00000542274 KIAA0556O60303 1618 aa15.71■□□□□ 0.11
CDH3-203ENST00000542274 MSH5O43196 834 aa15.7■□□□□ 0.1
CDH3-203ENST00000542274 RRBP1Q9P2E9 1410 aaKnown RBP15.69■□□□□ 0.1
CDH3-203ENST00000542274 LRRC9Q6ZRR7 1453 aa15.69■□□□□ 0.1
CDH3-203ENST00000542274 CLSPNQ9HAW4 1339 aa15.69■□□□□ 0.1
CDH3-203ENST00000542274 CCNB3Q8WWL7 1395 aa15.69■□□□□ 0.1
CDH3-203ENST00000542274 PHLDB1Q86UU1 1377 aa15.67■□□□□ 0.1
CDH3-203ENST00000542274 IL27Q8NEV9 243 aa15.67■□□□□ 0.1
CDH3-203ENST00000542274 MAP3K1Q13233 1512 aa15.67■□□□□ 0.1
CDH3-203ENST00000542274 TAF7LQ5H9L4 462 aa15.67■□□□□ 0.1
CDH3-203ENST00000542274 JPH4Q96JJ6 628 aa15.67■□□□□ 0.1
CDH3-203ENST00000542274 RBM10P98175 930 aaKnown RBP15.66■□□□□ 0.1
CDH3-203ENST00000542274 RBM19Q9Y4C8 960 aaKnown RBP15.65■□□□□ 0.1
CDH3-203ENST00000542274 GLIPR1L2Q4G1C9 344 aa15.63■□□□□ 0.09
CDH3-203ENST00000542274 CDK13Q14004 1512 aaKnown RBP15.62■□□□□ 0.09
CDH3-203ENST00000542274 FAM50AQ14320 339 aaKnown RBP15.62■□□□□ 0.09
CDH3-203ENST00000542274 DHX57Q6P158 1386 aaKnown RBP15.61■□□□□ 0.09
CDH3-203ENST00000542274 HECW1Q76N89 1606 aa15.61■□□□□ 0.09
CDH3-203ENST00000542274 VSIG10Q8N0Z9 540 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms