RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 CTTNBP2Q8WZ74 1663 aa11.67□□□□□ -0.54
VPS53-205ENST00000541903 CHMP7Q8WUX9 453 aaPredicted RBP11.66□□□□□ -0.54
VPS53-205ENST00000541903 ARHGAP35Q9NRY4 1499 aa11.63□□□□□ -0.55
VPS53-205ENST00000541903 FBLN2P98095 1184 aa11.63□□□□□ -0.55
VPS53-205ENST00000541903 EFCAB5A4FU69 1503 aa11.63□□□□□ -0.55
VPS53-205ENST00000541903 VPS8Q8N3P4 1428 aa11.62□□□□□ -0.55
VPS53-205ENST00000541903 ARAP1Q96P48 1450 aa11.62□□□□□ -0.55
VPS53-205ENST00000541903 IQGAP2Q13576 1575 aa11.61□□□□□ -0.55
VPS53-205ENST00000541903 KIAA0586Q9BVV6 1533 aa11.6□□□□□ -0.55
VPS53-205ENST00000541903 NUP160Q12769 1436 aa11.6□□□□□ -0.55
VPS53-205ENST00000541903 CEP170Q5SW79 1584 aa11.58□□□□□ -0.55
VPS53-205ENST00000541903 SAMD9Q5K651 1589 aa11.56□□□□□ -0.56
VPS53-205ENST00000541903 UGGT2Q9NYU1 1516 aa11.55□□□□□ -0.56
VPS53-205ENST00000541903 FHOD3Q2V2M9 1422 aa11.55□□□□□ -0.56
VPS53-205ENST00000541903 CHD1O14646 1710 aa11.55□□□□□ -0.56
VPS53-205ENST00000541903 P3H3Q8IVL6 736 aa11.54□□□□□ -0.56
VPS53-205ENST00000541903 APLP2Q06481 763 aa11.53□□□□□ -0.56
VPS53-205ENST00000541903 FMN1Q68DA7 1419 aa11.52□□□□□ -0.56
VPS53-205ENST00000541903 KIAA0556O60303 1618 aa11.49□□□□□ -0.57
VPS53-205ENST00000541903 CARMIL2Q6F5E8 1435 aa11.49□□□□□ -0.57
VPS53-205ENST00000541903 JPH4Q96JJ6 628 aa11.48□□□□□ -0.57
VPS53-205ENST00000541903 FYCO1Q9BQS8 1478 aa11.48□□□□□ -0.57
VPS53-205ENST00000541903 DISP1Q96F81 1524 aa11.48□□□□□ -0.57
VPS53-205ENST00000541903 PCF11O94913 1555 aaKnown RBP11.48□□□□□ -0.57
VPS53-205ENST00000541903 CASKIN1Q8WXD9 1431 aa11.47□□□□□ -0.57
VPS53-205ENST00000541903 PPARGC1BQ86YN6 1023 aaKnown RBP11.45□□□□□ -0.58
VPS53-205ENST00000541903 CLASP1Q7Z460 1538 aa11.45□□□□□ -0.58
VPS53-205ENST00000541903 PRG4Q92954 1404 aaPredicted RBP11.43□□□□□ -0.58
VPS53-205ENST00000541903 SHROOM2Q13796 1616 aa11.43□□□□□ -0.58
VPS53-205ENST00000541903 ATP1B4Q9UN42 357 aaPredicted RBP11.43□□□□□ -0.58
VPS53-205ENST00000541903 MAP3K1Q13233 1512 aa11.43□□□□□ -0.58
VPS53-205ENST00000541903 TTBK1Q5TCY1 1321 aaPredicted RBP11.42□□□□□ -0.58
VPS53-205ENST00000541903 TRIM26Q12899 539 aaPredicted RBP11.42□□□□□ -0.58
VPS53-205ENST00000541903 TIAM1Q13009 1591 aa11.41□□□□□ -0.58
VPS53-205ENST00000541903 HECW1Q76N89 1606 aa11.41□□□□□ -0.58
VPS53-205ENST00000541903 CFAP43Q8NDM7 1665 aa11.4□□□□□ -0.59
VPS53-205ENST00000541903 CCDC18Q5T9S5 1454 aa11.39□□□□□ -0.59
VPS53-205ENST00000541903 OSCARQ8IYS5 282 aa11.38□□□□□ -0.59
VPS53-205ENST00000541903 PCGF6Q9BYE7 350 aa11.37□□□□□ -0.59
VPS53-205ENST00000541903 RAPGEF6Q8TEU7 1601 aa11.37□□□□□ -0.59
VPS53-205ENST00000541903 PTPRGP23470 1445 aa11.36□□□□□ -0.59
VPS53-205ENST00000541903 KANK4Q5T7N3 995 aaPredicted RBP11.36□□□□□ -0.59
VPS53-205ENST00000541903 LRRC9Q6ZRR7 1453 aa11.36□□□□□ -0.59
VPS53-205ENST00000541903 EPRSP07814 1512 aaKnown RBP11.35□□□□□ -0.59
VPS53-205ENST00000541903 PLB1Q6P1J6 1458 aa11.34□□□□□ -0.59
VPS53-205ENST00000541903 ABCA8O94911 1581 aa11.33□□□□□ -0.6
VPS53-205ENST00000541903 ERCC6L2Q5T890 1561 aa11.33□□□□□ -0.6
VPS53-205ENST00000541903 NUP153P49790 1475 aaKnown RBP11.33□□□□□ -0.6
VPS53-205ENST00000541903 MTUS2Q5JR59 1369 aa11.33□□□□□ -0.6
VPS53-205ENST00000541903 EHBP1L1Q8N3D4 1523 aa11.32□□□□□ -0.6
VPS53-205ENST00000541903 CDK13Q14004 1512 aaKnown RBP11.31□□□□□ -0.6
VPS53-205ENST00000541903 LRRIQ1Q96JM4 1722 aa11.3□□□□□ -0.6
VPS53-205ENST00000541903 UACAQ9BZF9 1416 aa11.3□□□□□ -0.6
VPS53-205ENST00000541903 ARID3CA6NKF2 412 aa11.3□□□□□ -0.6
VPS53-205ENST00000541903 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.29□□□□□ -0.6
VPS53-205ENST00000541903 HNRNPUL2Q1KMD3 747 aaKnown RBP11.29□□□□□ -0.6
VPS53-205ENST00000541903 CDK11AQ9UQ88 783 aaPredicted RBP11.28□□□□□ -0.6
VPS53-205ENST00000541903 ABCC2Q92887 1545 aa11.27□□□□□ -0.61
VPS53-205ENST00000541903 MAGI3Q5TCQ9 1506 aa11.25□□□□□ -0.61
VPS53-205ENST00000541903 SUPT6HQ7KZ85 1726 aaKnown RBP11.25□□□□□ -0.61
VPS53-205ENST00000541903 RRBP1Q9P2E9 1410 aaKnown RBP11.25□□□□□ -0.61
VPS53-205ENST00000541903 UHRF1BP1LA0JNW5 1464 aa11.25□□□□□ -0.61
VPS53-205ENST00000541903 NCOA2Q15596 1464 aa11.25□□□□□ -0.61
VPS53-205ENST00000541903 PHLDB1Q86UU1 1377 aa11.24□□□□□ -0.61
VPS53-205ENST00000541903 TROQ12816 1431 aaPredicted RBP11.24□□□□□ -0.61
VPS53-205ENST00000541903 ATP10BO94823 1461 aa11.24□□□□□ -0.61
VPS53-205ENST00000541903 CCNB3Q8WWL7 1395 aa11.23□□□□□ -0.61
VPS53-205ENST00000541903 ARHGEF11O15085 1522 aa11.21□□□□□ -0.61
VPS53-205ENST00000541903 PLEKHD1A6NEE1 506 aa11.21□□□□□ -0.61
VPS53-205ENST00000541903 MYOM3Q5VTT5 1437 aa11.2□□□□□ -0.62
VPS53-205ENST00000541903 FGD6Q6ZV73 1430 aa11.19□□□□□ -0.62
VPS53-205ENST00000541903 KDM5BQ9UGL1 1544 aa11.19□□□□□ -0.62
VPS53-205ENST00000541903 KIF14Q15058 1648 aa11.18□□□□□ -0.62
VPS53-205ENST00000541903 ADCY10Q96PN6 1610 aa11.18□□□□□ -0.62
VPS53-205ENST00000541903 FAM50AQ14320 339 aaKnown RBP11.16□□□□□ -0.62
VPS53-205ENST00000541903 ZCCHC11Q5TAX3 1644 aaKnown RBP11.16□□□□□ -0.62
VPS53-205ENST00000541903 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.16□□□□□ -0.62
VPS53-205ENST00000541903 MIA2Q96PC5 1412 aa11.15□□□□□ -0.62
VPS53-205ENST00000541903 ITSN2Q9NZM3 1697 aa11.13□□□□□ -0.63
VPS53-205ENST00000541903 RIMBP3CA6NJZ7 1639 aa11.13□□□□□ -0.63
VPS53-205ENST00000541903 RIMBP3BA6NNM3 1639 aa11.13□□□□□ -0.63
VPS53-205ENST00000541903 RIMBP3Q9UFD9 1639 aa11.13□□□□□ -0.63
VPS53-205ENST00000541903 TCOF1Q13428 1488 aaKnown RBP11.12□□□□□ -0.63
VPS53-205ENST00000541903 ABCC10Q5T3U5 1492 aa11.12□□□□□ -0.63
VPS53-205ENST00000541903 NPM1P06748 294 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS53-205ENST00000541903 PTPN23Q9H3S7 1636 aa11.12□□□□□ -0.63
VPS53-205ENST00000541903 GPATCH8Q9UKJ3 1502 aaKnown RBP11.11□□□□□ -0.63
VPS53-205ENST00000541903 ITGAEP38570 1179 aa11.11□□□□□ -0.63
VPS53-205ENST00000541903 WDR7Q9Y4E6 1490 aa11.11□□□□□ -0.63
VPS53-205ENST00000541903 CFDP1Q9UEE9 299 aaPredicted RBP11.1□□□□□ -0.63
VPS53-205ENST00000541903 ASXL2Q76L83 1435 aa11.08□□□□□ -0.64
VPS53-205ENST00000541903 CYB5RLQ6IPT4 315 aa11.07□□□□□ -0.64
VPS53-205ENST00000541903 KCNH8Q96L42 1107 aa11.07□□□□□ -0.64
VPS53-205ENST00000541903 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.07□□□□□ -0.64
VPS53-205ENST00000541903 TTC37Q6PGP7 1564 aa11.07□□□□□ -0.64
VPS53-205ENST00000541903 CAMSAP2Q08AD1 1489 aa11.06□□□□□ -0.64
VPS53-205ENST00000541903 PREX2Q70Z35 1606 aa11.06□□□□□ -0.64
VPS53-205ENST00000541903 ZNF777Q9ULD5 760 aaPredicted RBP11.05□□□□□ -0.64
VPS53-205ENST00000541903 ARHGAP5Q13017 1502 aa11.04□□□□□ -0.64
VPS53-205ENST00000541903 CDC42BPAQ5VT25 1732 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms